Wall clock time and date at job start Sat Mar 6 2021 08:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35986 * 116.99867 * 2 1 4 4 C 1.38526 * 120.07649 * 0.02857 * 3 2 1 5 5 C 1.38277 * 120.00171 * 179.97438 * 4 3 2 6 6 C 1.50704 * 119.92517 * 179.97438 * 5 4 3 7 7 O 1.42900 * 109.47419 * 299.99674 * 6 5 4 8 8 Si 1.86310 * 109.46848 * 179.97438 * 6 5 4 9 9 H 1.48494 * 109.47140 * 60.00381 * 8 6 5 10 10 H 1.48503 * 109.46860 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47142 * 300.00056 * 8 6 5 12 12 C 1.38209 * 120.15097 * 359.97421 * 5 4 3 13 13 C 1.38295 * 120.14287 * 359.76802 * 12 5 4 14 14 C 1.38519 * 119.99527 * 0.51023 * 13 12 5 15 15 O 1.36000 * 120.07333 * 179.74579 * 14 13 12 16 16 C 1.42898 * 116.99454 * 359.72414 * 15 14 13 17 17 C 1.50700 * 109.46900 * 180.02562 * 16 15 14 18 18 O 1.20826 * 120.00162 * 0.27500 * 17 16 15 19 19 O 1.34234 * 120.00068 * 179.97438 * 17 16 15 20 20 C 1.45196 * 116.99938 * 180.02562 * 19 17 16 21 21 C 1.50703 * 109.47396 * 180.02562 * 20 19 17 22 22 C 1.38240 * 119.99552 * 269.72822 * 21 20 19 23 23 C 1.38234 * 119.99784 * 179.76272 * 22 21 20 24 24 C 1.38237 * 119.99733 * 0.50289 * 23 22 21 25 25 Si 1.86807 * 119.99755 * 179.72588 * 24 23 22 26 26 C 1.86298 * 109.46908 * 270.02483 * 25 24 23 27 27 C 1.86296 * 109.47191 * 30.02080 * 25 24 23 28 28 C 1.86296 * 109.47011 * 150.02533 * 25 24 23 29 29 C 1.38233 * 120.00370 * 359.74887 * 24 23 22 30 30 C 1.38229 * 120.00313 * 89.99381 * 21 20 19 31 31 H 1.08999 * 109.47228 * 299.99695 * 1 2 3 32 32 H 1.08993 * 109.47347 * 60.00050 * 1 2 3 33 33 H 1.09008 * 109.47079 * 180.02562 * 1 2 3 34 34 H 1.08006 * 119.99906 * 359.94901 * 4 3 2 35 35 H 1.08998 * 109.47243 * 60.00215 * 6 5 4 36 36 H 0.96699 * 114.00176 * 300.00156 * 7 6 5 37 37 H 1.07995 * 119.93372 * 180.02562 * 12 5 4 38 38 H 1.07994 * 120.00161 * 180.25798 * 13 12 5 39 39 H 1.08992 * 109.47384 * 60.00369 * 16 15 14 40 40 H 1.08999 * 109.47560 * 299.99690 * 16 15 14 41 41 H 1.09012 * 109.47257 * 300.00032 * 20 19 17 42 42 H 1.08996 * 109.47465 * 60.00089 * 20 19 17 43 43 H 1.08001 * 120.00195 * 359.97438 * 22 21 20 44 44 H 1.07995 * 120.00144 * 180.22961 * 23 22 21 45 45 H 1.08996 * 109.47396 * 59.99837 * 26 25 24 46 46 H 1.08995 * 109.47314 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.47405 * 299.99891 * 26 25 24 48 48 H 1.09007 * 109.46910 * 59.99738 * 27 25 24 49 49 H 1.08996 * 109.47277 * 179.97438 * 27 25 24 50 50 H 1.09004 * 109.47455 * 300.00183 * 27 25 24 51 51 H 1.08997 * 109.47551 * 59.99939 * 28 25 24 52 52 H 1.08996 * 109.47039 * 180.02562 * 28 25 24 53 53 H 1.09002 * 109.46935 * 299.99598 * 28 25 24 54 54 H 1.07997 * 120.00018 * 179.97438 * 29 24 23 55 55 H 1.08003 * 120.00093 * 0.02562 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2934 2.3744 0.0006 5 6 1.9228 3.6057 0.0011 6 6 1.1019 4.8696 0.0012 7 8 0.2780 4.9026 -1.1659 8 14 2.2369 6.3471 0.0028 9 1 3.0943 6.3138 -1.2092 10 1 1.4281 7.5925 0.0034 11 1 3.0927 6.3126 1.2158 12 6 3.3028 3.6799 0.0016 13 6 4.0605 2.5230 0.0064 14 6 3.4363 1.2864 0.0000 15 8 4.1799 0.1476 -0.0005 16 6 5.6007 0.3007 -0.0004 17 6 6.2522 -1.0581 -0.0017 18 8 5.5700 -2.0553 -0.0076 19 8 7.5907 -1.1607 -0.0023 20 6 8.1490 -2.5010 -0.0041 21 6 9.6538 -2.4184 -0.0040 22 6 10.3442 -2.3846 -1.2012 23 6 11.7242 -2.3038 -1.2012 24 6 12.4143 -2.2674 -0.0040 25 14 14.2796 -2.1660 -0.0039 26 6 14.9950 -3.8862 -0.0063 27 6 14.8520 -1.2535 -1.5239 28 6 14.8521 -1.2574 1.5184 29 6 11.7243 -2.3065 1.1932 30 6 10.3440 -2.3820 1.1931 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 0.2148 2.3193 0.0002 35 1 0.4728 4.8942 0.8910 36 1 0.7720 4.8833 -1.9969 37 1 3.7907 4.6434 0.0024 38 1 5.1387 2.5836 0.0110 39 1 5.9069 0.8500 0.8898 40 1 5.9069 0.8509 -0.8901 41 1 7.8148 -3.0351 0.8855 42 1 7.8141 -3.0330 -0.8945 43 1 9.8052 -2.4178 -2.1365 44 1 12.2633 -2.2737 -2.1364 45 1 14.6600 -4.4178 -0.8969 46 1 16.0833 -3.8271 -0.0067 47 1 14.6601 -4.4202 0.8830 48 1 14.4333 -0.2470 -1.5226 49 1 15.9403 -1.1939 -1.5237 50 1 14.5170 -1.7851 -2.4146 51 1 14.5173 -1.7914 2.4077 52 1 15.9404 -1.1979 1.5182 53 1 14.4336 -0.2510 1.5197 54 1 12.2635 -2.2784 2.1285 55 1 9.8048 -2.4131 2.1284 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_471980_9435856.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:28:36 Heat of formation + Delta-G solvation = -167.542878 kcal Electronic energy + Delta-G solvation = -34196.690456 eV Core-core repulsion = 29481.727013 eV Total energy + Delta-G solvation = -4714.963443 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 404.171 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.05185 -41.52963 -40.09487 -39.55213 -38.93167 -37.68015 -36.93576 -33.22391 -32.13204 -31.90860 -31.51743 -30.14824 -29.40975 -28.48349 -28.28236 -28.26395 -27.24279 -26.18938 -23.85221 -23.51081 -22.77278 -22.20533 -21.99075 -19.99284 -18.76142 -18.67683 -18.17460 -18.16536 -18.05937 -17.34949 -17.09609 -16.78865 -16.45449 -16.08869 -16.05729 -15.89192 -15.87174 -15.80505 -15.15184 -14.87052 -14.48682 -14.40000 -14.21583 -14.20763 -14.04519 -13.93022 -13.74277 -13.72122 -13.61602 -13.51107 -13.39094 -13.15207 -13.10084 -12.95559 -12.76631 -12.62658 -12.56790 -12.27516 -12.18091 -12.14361 -12.06014 -12.00724 -11.78538 -11.75776 -11.55757 -10.92025 -10.79387 -10.74812 -10.42385 -9.82950 -9.81861 -9.72365 -8.97554 0.03031 0.12344 0.22678 0.49944 0.90084 1.05525 1.20311 1.50753 1.55641 1.83475 1.95392 2.03478 2.08415 2.28055 2.38110 2.51913 2.66967 2.91734 3.37106 3.49185 3.65369 3.69188 3.72403 3.79437 3.81960 3.93561 3.97136 4.09367 4.12627 4.18700 4.22355 4.26054 4.33619 4.35557 4.51877 4.59018 4.63794 4.68582 4.68749 4.85303 4.85613 4.89711 4.90760 4.91071 4.91512 4.95806 4.95976 5.06545 5.10125 5.13980 5.32721 5.37981 5.53877 5.54186 5.56966 5.60366 5.68860 5.71976 5.87474 6.09158 6.42392 6.50088 6.71148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.084 3.916 4 C -0.147 4.147 5 C -0.114 4.114 6 C -0.080 4.080 7 O -0.553 6.553 8 Si 0.984 3.016 9 H -0.247 1.247 10 H -0.278 1.278 11 H -0.252 1.252 12 C -0.124 4.124 13 C -0.159 4.159 14 C 0.083 3.917 15 O -0.314 6.314 16 C 0.064 3.936 17 C 0.466 3.534 18 O -0.525 6.525 19 O -0.344 6.344 20 C 0.110 3.890 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.102 4.102 24 C -0.371 4.371 25 Si 1.128 2.872 26 C -0.464 4.464 27 C -0.462 4.462 28 C -0.462 4.462 29 C -0.102 4.102 30 C -0.119 4.119 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.124 0.876 36 H 0.389 0.611 37 H 0.146 0.854 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.142 0.858 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.072 0.928 52 H 0.074 0.926 53 H 0.069 0.931 54 H 0.142 0.858 55 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.900 4.222 -0.117 6.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.038 3.962 4 C -0.166 4.166 5 C -0.115 4.115 6 C -0.190 4.190 7 O -0.360 6.360 8 Si 0.808 3.192 9 H -0.170 1.170 10 H -0.204 1.204 11 H -0.176 1.176 12 C -0.142 4.142 13 C -0.178 4.178 14 C 0.039 3.961 15 O -0.229 6.229 16 C -0.011 4.011 17 C 0.309 3.691 18 O -0.414 6.414 19 O -0.261 6.261 20 C 0.037 3.963 21 C -0.106 4.106 22 C -0.137 4.137 23 C -0.119 4.119 24 C -0.410 4.410 25 Si 1.315 2.685 26 C -0.571 4.571 27 C -0.569 4.569 28 C -0.569 4.569 29 C -0.119 4.119 30 C -0.137 4.137 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.129 0.871 34 H 0.167 0.833 35 H 0.142 0.858 36 H 0.238 0.762 37 H 0.163 0.837 38 H 0.189 0.811 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.147 0.853 44 H 0.160 0.840 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.093 0.907 53 H 0.088 0.912 54 H 0.160 0.840 55 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 4.734 4.198 0.321 6.335 hybrid contribution -0.599 -0.814 -0.335 1.064 sum 4.135 3.384 -0.014 5.343 Atomic orbital electron populations 1.23321 0.76555 1.05309 1.02345 1.86186 1.23226 1.26463 1.88989 1.18626 0.89567 0.85822 1.02162 1.21037 1.00831 0.90124 1.04569 1.20233 0.94076 0.95401 1.01767 1.25072 1.00627 1.01130 0.92121 1.86481 1.36499 1.96875 1.16183 0.85189 0.77030 0.75330 0.81624 1.17044 1.20402 1.17593 1.21011 0.92958 0.98909 1.01332 1.21337 1.02135 0.89567 1.04739 1.18481 0.88158 0.85924 1.03585 1.86140 1.17406 1.29609 1.89729 1.22211 0.79221 0.91281 1.08388 1.23483 0.81218 0.92103 0.72305 1.90740 1.64895 1.40343 1.45389 1.86515 1.21321 1.34499 1.83767 1.21961 0.90152 0.80462 1.03755 1.19529 0.92409 1.03920 0.94759 1.21383 0.95583 0.99328 0.97387 1.21403 0.93572 0.97576 0.99380 1.28099 1.19057 0.99995 0.93830 0.77163 0.59245 0.65874 0.66230 1.26305 1.07163 1.19192 1.04392 1.26276 1.06393 1.08608 1.15670 1.26275 1.06395 1.08574 1.15706 1.21403 0.93568 0.97582 0.99382 1.21380 0.95580 0.99329 0.97391 0.91507 0.91532 0.87087 0.83276 0.85799 0.76161 0.83689 0.81144 0.84391 0.84365 0.90066 0.90057 0.85347 0.84032 0.91436 0.90665 0.91434 0.91192 0.90656 0.90899 0.90901 0.90657 0.91193 0.84035 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.02 9.81 113.37 1.11 1.13 16 2 O -0.33 -3.33 10.28 -79.54 -0.82 -4.15 16 3 C 0.08 0.61 6.70 22.57 0.15 0.76 16 4 C -0.15 -0.41 8.60 22.35 0.19 -0.22 16 5 C -0.11 0.00 5.39 -19.86 -0.11 -0.11 16 6 C -0.08 0.19 2.82 71.24 0.20 0.39 16 7 O -0.55 0.48 12.77 -148.98 -1.90 -1.42 16 8 Si 0.98 -3.32 25.07 68.60 1.72 -1.60 16 9 H -0.25 0.98 7.11 99.48 0.71 1.68 16 10 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 11 H -0.25 0.75 7.11 99.48 0.71 1.46 16 12 C -0.12 0.20 8.66 22.28 0.19 0.39 16 13 C -0.16 0.17 9.04 22.35 0.20 0.37 16 14 C 0.08 0.48 6.70 22.57 0.15 0.63 16 15 O -0.31 -2.68 9.46 -67.12 -0.63 -3.32 16 16 C 0.06 -0.01 5.33 71.24 0.38 0.37 16 17 C 0.47 3.04 8.03 71.24 0.57 3.61 16 18 O -0.53 -8.05 16.25 28.39 0.46 -7.59 16 19 O -0.34 -1.52 10.20 -51.46 -0.53 -2.04 16 20 C 0.11 0.44 5.59 71.24 0.40 0.84 16 21 C -0.11 -0.35 5.52 -19.87 -0.11 -0.46 16 22 C -0.12 -0.23 9.70 22.27 0.22 -0.02 16 23 C -0.10 0.03 9.29 22.27 0.21 0.24 16 24 C -0.37 0.58 4.59 22.27 0.10 0.68 16 25 Si 1.13 -7.48 12.32 68.60 0.85 -6.64 16 26 C -0.46 1.94 8.65 113.37 0.98 2.92 16 27 C -0.46 2.45 8.53 113.37 0.97 3.41 16 28 C -0.46 2.44 8.53 113.37 0.97 3.41 16 29 C -0.10 0.03 9.29 22.27 0.21 0.24 16 30 C -0.12 -0.23 9.70 22.27 0.22 -0.02 16 31 H 0.07 -0.09 7.66 -2.39 -0.02 -0.11 16 32 H 0.07 -0.08 7.66 -2.39 -0.02 -0.10 16 33 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 34 H 0.15 0.08 6.30 -2.91 -0.02 0.06 16 35 H 0.12 -0.48 7.96 -2.39 -0.02 -0.50 16 36 H 0.39 -2.76 8.70 -74.06 -0.64 -3.40 16 37 H 0.15 -0.82 4.86 -2.91 -0.01 -0.84 16 38 H 0.17 -1.40 6.30 -2.91 -0.02 -1.42 16 39 H 0.14 -0.90 7.65 -2.39 -0.02 -0.92 16 40 H 0.14 -0.91 7.68 -2.39 -0.02 -0.93 16 41 H 0.08 0.32 8.08 -2.38 -0.02 0.30 16 42 H 0.08 0.32 8.07 -2.39 -0.02 0.30 16 43 H 0.13 -0.06 8.06 -2.91 -0.02 -0.09 16 44 H 0.14 -0.67 7.43 -2.91 -0.02 -0.69 16 45 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 46 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 47 H 0.07 -0.23 7.96 -2.39 -0.02 -0.25 16 48 H 0.07 -0.32 7.96 -2.38 -0.02 -0.34 16 49 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 50 H 0.07 -0.41 7.69 -2.38 -0.02 -0.43 16 51 H 0.07 -0.41 7.69 -2.39 -0.02 -0.43 16 52 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 53 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 54 H 0.14 -0.66 7.43 -2.91 -0.02 -0.68 16 55 H 0.13 -0.06 8.06 -2.91 -0.02 -0.08 16 Total: 0.00 -24.44 459.31 7.36 -17.08 By element: Atomic # 1 Polarization: -9.93 SS G_CDS: 1.02 Total: -8.91 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 7.20 Total: 18.60 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -3.42 Total: -18.52 kcal Atomic # 14 Polarization: -10.80 SS G_CDS: 2.56 Total: -8.24 kcal Total: -24.44 7.36 -17.08 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_471980_9435856.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.463 kcal (2) G-P(sol) polarization free energy of solvation -24.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds