Wall clock time and date at job start Sat Mar 6 2021 10:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38709 * 120.03209 * 284.72420 * 4 2 1 6 6 O 1.35901 * 120.05315 * 0.02562 * 5 4 2 7 7 C 1.42903 * 116.99785 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46693 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00302 * 359.97438 * 8 7 6 10 10 O 1.34233 * 119.99473 * 179.97438 * 8 7 6 11 11 C 1.45204 * 116.99837 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47152 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.84638 * 314.67010 * 12 11 10 14 14 C 1.53774 * 113.61524 * 85.86646 * 12 11 10 15 15 C 1.53952 * 87.02207 * 139.95175 * 14 12 11 16 16 H 1.08998 * 113.53846 * 89.18670 * 15 14 12 17 17 O 1.42906 * 113.74423 * 220.05856 * 15 14 12 18 18 C 1.53783 * 113.61349 * 183.47655 * 12 11 10 19 19 C 1.38752 * 119.89069 * 179.74982 * 5 4 2 20 20 C 1.38129 * 119.94016 * 0.52794 * 19 5 4 21 21 C 1.38283 * 120.05780 * 359.72946 * 20 19 5 22 22 C 1.38169 * 120.02440 * 105.00597 * 4 2 1 23 23 H 0.96695 * 113.99582 * 299.99951 * 1 2 3 24 24 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 25 25 H 1.48497 * 110.00010 * 178.67854 * 3 2 1 26 26 H 1.48495 * 109.99824 * 300.00080 * 3 2 1 27 27 H 1.08998 * 109.46618 * 299.99344 * 7 6 5 28 28 H 1.08994 * 109.47375 * 59.99914 * 7 6 5 29 29 H 1.08992 * 109.47314 * 300.00646 * 11 10 8 30 30 H 1.08999 * 109.46779 * 60.00353 * 11 10 8 31 31 H 1.08996 * 113.61593 * 254.53408 * 14 12 11 32 32 H 1.09006 * 113.61708 * 25.42946 * 14 12 11 33 33 H 0.96699 * 113.99597 * 277.59626 * 17 15 14 34 34 H 1.09005 * 113.61402 * 334.56060 * 18 12 11 35 35 H 1.08997 * 113.61481 * 105.38682 * 18 12 11 36 36 H 1.08000 * 120.02800 * 180.27664 * 19 5 4 37 37 H 1.08004 * 119.96864 * 179.74717 * 20 19 5 38 38 H 1.08001 * 119.94520 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.97105 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.8750 -2.0945 -1.3046 6 8 1.3663 -2.8114 -0.2681 7 6 1.3389 -4.2327 -0.4141 8 6 0.7469 -4.8535 0.8249 9 8 0.3860 -4.1510 1.7393 10 8 0.6206 -6.1870 0.9127 11 6 0.0425 -6.7153 2.1354 12 6 -0.0196 -8.2418 2.0521 13 1 -0.4003 -8.5982 1.0949 14 6 1.2786 -8.9364 2.4958 15 6 0.3870 -9.9863 3.1835 16 1 0.1185 -10.8208 2.5357 17 8 0.8742 -10.4083 4.4589 18 6 -0.6963 -8.8980 3.2671 19 6 2.3335 -2.7453 -2.4410 20 6 2.8548 -2.0146 -3.4908 21 6 2.9148 -0.6353 -3.4123 22 6 2.4538 0.0158 -2.2833 23 1 -0.3932 0.4417 0.7650 24 1 1.7923 -0.5139 0.8900 25 1 3.5347 1.7701 0.0322 26 1 1.5617 2.4678 -1.2085 27 1 0.7313 -4.4973 -1.2794 28 1 2.3542 -4.6030 -0.5560 29 1 0.6596 -6.4230 2.9849 30 1 -0.9639 -6.3168 2.2632 31 1 1.8654 -9.3350 1.6683 32 1 1.8739 -8.3456 3.1921 33 1 1.5557 -11.0927 4.4128 34 1 -0.6419 -8.2968 4.1747 35 1 -1.7021 -9.2645 3.0617 36 1 2.2865 -3.8225 -2.5029 37 1 3.2156 -2.5210 -4.3739 38 1 3.3225 -0.0658 -4.2345 39 1 2.5017 1.0931 -2.2244 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_473460_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:16:22 Heat of formation + Delta-G solvation = -137.550645 kcal Electronic energy + Delta-G solvation = -23185.755604 eV Core-core repulsion = 19448.053103 eV Total energy + Delta-G solvation = -3737.702501 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.87940 -41.20511 -40.29542 -38.73346 -37.46426 -37.36151 -36.04741 -32.94473 -31.60579 -30.48200 -28.91100 -26.87501 -26.61097 -24.22972 -23.35115 -22.54167 -21.97789 -20.68216 -19.53659 -18.73305 -18.42034 -18.31134 -17.99239 -17.81454 -16.88397 -16.82806 -16.74335 -16.39183 -15.71515 -15.51628 -15.11965 -15.05273 -14.89663 -14.31949 -13.99892 -13.93022 -13.57829 -13.57729 -13.53776 -13.00372 -12.85953 -12.72242 -12.51283 -12.30466 -12.21689 -11.89214 -11.79106 -11.73905 -11.44497 -11.32472 -10.85011 -10.15518 -10.04780 -9.29467 -4.92898 0.14652 0.33330 0.94444 1.06244 1.34528 1.67969 1.99159 2.36116 2.59303 3.06825 3.28665 3.38893 3.45154 3.49310 3.66096 3.72729 3.78066 3.79495 3.80513 3.87741 4.06234 4.06353 4.12923 4.18699 4.25729 4.35429 4.43005 4.52564 4.57799 4.64852 4.65687 4.84075 4.89620 4.98540 5.17351 5.19443 5.27041 5.31581 5.41442 5.59428 6.17594 6.61520 6.63588 6.78606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.063 4.063 3 Si 0.684 3.316 4 C -0.101 4.101 5 C 0.153 3.847 6 O -0.283 6.283 7 C 0.067 3.933 8 C 0.464 3.536 9 O -0.479 6.479 10 O -0.352 6.352 11 C 0.081 3.919 12 C -0.111 4.111 13 H 0.107 0.893 14 C -0.165 4.165 15 C 0.077 3.923 16 H 0.085 0.915 17 O -0.559 6.559 18 C -0.120 4.120 19 C -0.209 4.209 20 C -0.072 4.072 21 C -0.148 4.148 22 C -0.084 4.084 23 H 0.380 0.620 24 H 0.074 0.926 25 H -0.254 1.254 26 H -0.250 1.250 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.381 0.619 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.424 -2.582 -1.274 3.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.348 6.348 2 C -0.174 4.174 3 Si 0.585 3.415 4 C -0.101 4.101 5 C 0.107 3.893 6 O -0.196 6.196 7 C -0.010 4.010 8 C 0.305 3.695 9 O -0.364 6.364 10 O -0.270 6.270 11 C 0.008 3.992 12 C -0.130 4.130 13 H 0.126 0.874 14 C -0.202 4.202 15 C 0.018 3.982 16 H 0.103 0.897 17 O -0.365 6.365 18 C -0.157 4.157 19 C -0.228 4.228 20 C -0.090 4.090 21 C -0.166 4.166 22 C -0.102 4.102 23 H 0.228 0.772 24 H 0.092 0.908 25 H -0.179 1.179 26 H -0.175 1.175 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.228 0.772 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.152 0.848 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.362 -1.604 -1.535 2.605 hybrid contribution 0.470 -1.152 -0.521 1.349 sum 1.832 -2.756 -2.056 3.896 Atomic orbital electron populations 1.86497 1.17051 1.81933 1.49290 1.24535 0.85967 1.09767 0.97105 0.95185 0.80863 0.78358 0.87083 1.18683 1.04455 0.90259 0.96733 1.18673 0.93467 0.90530 0.86604 1.86133 1.78045 1.16519 1.38882 1.21893 1.03198 0.80870 0.95006 1.22809 0.76885 0.81309 0.88497 1.90747 1.44072 1.62486 1.39078 1.86417 1.75231 1.22458 1.42877 1.23157 0.99012 0.93030 0.83994 1.22383 0.98608 0.91890 1.00081 0.87440 1.23824 0.96767 0.98744 1.00912 1.23311 0.95046 0.94807 0.85086 0.89676 1.86533 1.60045 1.61106 1.28824 1.23070 0.98292 0.96477 0.97891 1.21324 1.06137 1.00659 0.94633 1.21031 0.96239 0.93897 0.97803 1.21060 1.02548 0.94733 0.98307 1.20889 0.97313 0.99294 0.92663 0.77242 0.90789 1.17909 1.17495 0.87411 0.87502 0.90506 0.90424 0.90638 0.89017 0.77156 0.88644 0.89931 0.84801 0.85000 0.85171 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.58 12.86 -35.23 -0.45 -2.04 16 2 C -0.06 -0.15 2.37 36.01 0.09 -0.07 16 3 Si 0.68 0.14 30.20 -169.99 -5.13 -5.00 16 4 C -0.10 -0.38 5.30 -104.47 -0.55 -0.93 16 5 C 0.15 0.50 6.66 -39.22 -0.26 0.24 16 6 O -0.28 -1.03 9.00 -39.38 -0.35 -1.39 16 7 C 0.07 0.01 5.33 36.01 0.19 0.20 16 8 C 0.46 1.11 8.03 36.01 0.29 1.40 16 9 O -0.48 -2.87 16.25 -25.48 -0.41 -3.29 16 10 O -0.35 -0.36 10.22 -39.26 -0.40 -0.76 16 11 C 0.08 0.02 5.29 37.16 0.20 0.21 16 12 C -0.11 0.15 4.01 -89.81 -0.36 -0.21 16 13 H 0.11 -0.23 8.14 -51.93 -0.42 -0.65 16 14 C -0.16 0.22 7.48 -25.83 -0.19 0.03 16 15 C 0.08 -0.09 5.21 -25.83 -0.13 -0.22 16 16 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 17 O -0.56 -0.17 13.68 -35.23 -0.48 -0.65 16 18 C -0.12 0.13 7.48 -25.91 -0.19 -0.06 16 19 C -0.21 -0.19 9.04 -39.43 -0.36 -0.55 16 20 C -0.07 -0.03 10.04 -39.60 -0.40 -0.43 16 21 C -0.15 -0.20 10.04 -39.56 -0.40 -0.59 16 22 C -0.08 -0.24 8.66 -39.60 -0.34 -0.58 16 23 H 0.38 -0.74 8.74 45.56 0.40 -0.34 16 24 H 0.07 0.17 7.82 -51.93 -0.41 -0.24 16 25 H -0.25 -0.63 7.11 56.52 0.40 -0.23 16 26 H -0.25 -0.63 6.75 56.52 0.38 -0.25 16 27 H 0.11 -0.23 7.65 -51.93 -0.40 -0.62 16 28 H 0.11 -0.27 7.67 -51.93 -0.40 -0.67 16 29 H 0.08 0.05 7.87 -51.93 -0.41 -0.36 16 30 H 0.08 0.02 8.13 -51.93 -0.42 -0.40 16 31 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 32 H 0.09 -0.04 7.92 -51.93 -0.41 -0.45 16 33 H 0.38 -1.42 9.12 45.56 0.42 -1.00 16 34 H 0.10 -0.03 8.10 -51.93 -0.42 -0.45 16 35 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 36 H 0.13 -0.26 6.30 -52.49 -0.33 -0.59 16 37 H 0.13 -0.27 8.06 -52.48 -0.42 -0.69 16 38 H 0.13 -0.10 8.06 -52.49 -0.42 -0.53 16 39 H 0.13 0.27 4.90 -52.49 -0.26 0.02 16 LS Contribution 333.91 15.07 5.03 5.03 Total: 0.00 -9.87 333.91 -9.03 -18.90 By element: Atomic # 1 Polarization: -4.85 SS G_CDS: -4.39 Total: -9.25 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.43 Total: -1.56 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -2.10 Total: -8.13 kcal Atomic # 14 Polarization: 0.14 SS G_CDS: -5.13 Total: -5.00 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -9.87 -9.03 -18.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_473460_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.652 kcal (2) G-P(sol) polarization free energy of solvation -9.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds