Wall clock time and date at job start Sat Mar 6 2021 10:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47509 * 2 1 4 4 C 1.50702 * 109.47007 * 239.99614 * 2 1 3 5 5 C 1.38709 * 120.03209 * 284.72420 * 4 2 1 6 6 O 1.35901 * 120.05315 * 0.02562 * 5 4 2 7 7 C 1.42903 * 116.99785 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46693 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00302 * 359.97438 * 8 7 6 10 10 O 1.34233 * 119.99473 * 179.97438 * 8 7 6 11 11 C 1.45204 * 116.99837 * 179.97438 * 10 8 7 12 12 C 1.53001 * 109.47152 * 180.02562 * 11 10 8 13 13 H 1.09001 * 112.84638 * 314.67010 * 12 11 10 14 14 C 1.53774 * 113.61524 * 85.86646 * 12 11 10 15 15 C 1.53952 * 87.02207 * 139.95175 * 14 12 11 16 16 H 1.08998 * 113.53846 * 89.18670 * 15 14 12 17 17 O 1.42906 * 113.74423 * 220.05856 * 15 14 12 18 18 C 1.53783 * 113.61349 * 183.47655 * 12 11 10 19 19 C 1.38752 * 119.89069 * 179.74982 * 5 4 2 20 20 C 1.38129 * 119.94016 * 0.52794 * 19 5 4 21 21 C 1.38283 * 120.05780 * 359.72946 * 20 19 5 22 22 C 1.38169 * 120.02440 * 105.00597 * 4 2 1 23 23 H 0.96695 * 113.99582 * 299.99951 * 1 2 3 24 24 H 1.09004 * 109.46926 * 120.00048 * 2 1 3 25 25 H 1.48497 * 110.00010 * 178.67854 * 3 2 1 26 26 H 1.48495 * 109.99824 * 300.00080 * 3 2 1 27 27 H 1.08998 * 109.46618 * 299.99344 * 7 6 5 28 28 H 1.08994 * 109.47375 * 59.99914 * 7 6 5 29 29 H 1.08992 * 109.47314 * 300.00646 * 11 10 8 30 30 H 1.08999 * 109.46779 * 60.00353 * 11 10 8 31 31 H 1.08996 * 113.61593 * 254.53408 * 14 12 11 32 32 H 1.09006 * 113.61708 * 25.42946 * 14 12 11 33 33 H 0.96699 * 113.99597 * 277.59626 * 17 15 14 34 34 H 1.09005 * 113.61402 * 334.56060 * 18 12 11 35 35 H 1.08997 * 113.61481 * 105.38682 * 18 12 11 36 36 H 1.08000 * 120.02800 * 180.27664 * 19 5 4 37 37 H 1.08004 * 119.96864 * 179.74717 * 20 19 5 38 38 H 1.08001 * 119.94520 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.97105 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.8750 -2.0945 -1.3046 6 8 1.3663 -2.8114 -0.2681 7 6 1.3389 -4.2327 -0.4141 8 6 0.7469 -4.8535 0.8249 9 8 0.3860 -4.1510 1.7393 10 8 0.6206 -6.1870 0.9127 11 6 0.0425 -6.7153 2.1354 12 6 -0.0196 -8.2418 2.0521 13 1 -0.4003 -8.5982 1.0949 14 6 1.2786 -8.9364 2.4958 15 6 0.3870 -9.9863 3.1835 16 1 0.1185 -10.8208 2.5357 17 8 0.8742 -10.4083 4.4589 18 6 -0.6963 -8.8980 3.2671 19 6 2.3335 -2.7453 -2.4410 20 6 2.8548 -2.0146 -3.4908 21 6 2.9148 -0.6353 -3.4123 22 6 2.4538 0.0158 -2.2833 23 1 -0.3932 0.4417 0.7650 24 1 1.7923 -0.5139 0.8900 25 1 3.5347 1.7701 0.0322 26 1 1.5617 2.4678 -1.2085 27 1 0.7313 -4.4973 -1.2794 28 1 2.3542 -4.6030 -0.5560 29 1 0.6596 -6.4230 2.9849 30 1 -0.9639 -6.3168 2.2632 31 1 1.8654 -9.3350 1.6683 32 1 1.8739 -8.3456 3.1921 33 1 1.5557 -11.0927 4.4128 34 1 -0.6419 -8.2968 4.1747 35 1 -1.7021 -9.2645 3.0617 36 1 2.2865 -3.8225 -2.5029 37 1 3.2156 -2.5210 -4.3739 38 1 3.3225 -0.0658 -4.2345 39 1 2.5017 1.0931 -2.2244 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_473460_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:16:22 Heat of formation + Delta-G solvation = -138.956347 kcal Electronic energy + Delta-G solvation = -23185.816560 eV Core-core repulsion = 19448.053103 eV Total energy + Delta-G solvation = -3737.763457 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00881 -41.29188 -40.25322 -38.82310 -37.64143 -37.50333 -36.01770 -33.02096 -31.67346 -30.54148 -28.91643 -26.77341 -26.71639 -24.27658 -23.34489 -22.62981 -22.09355 -20.59404 -19.61560 -18.71521 -18.54200 -18.46193 -18.10236 -17.90674 -16.95551 -16.87284 -16.76391 -16.34055 -15.78538 -15.55783 -15.17111 -15.11570 -14.99430 -14.39349 -14.08505 -14.00544 -13.66320 -13.63384 -13.50112 -13.09889 -12.84011 -12.75902 -12.45806 -12.31682 -12.23788 -12.03931 -11.92128 -11.74796 -11.59722 -11.25199 -10.75814 -10.28693 -10.13218 -9.39037 -4.97571 0.06238 0.24210 0.88050 0.89847 1.26487 1.60569 1.89252 2.31091 2.52303 3.14525 3.34618 3.41860 3.45331 3.54573 3.65171 3.76296 3.83541 3.88034 3.89213 3.92430 4.04550 4.12053 4.13024 4.16426 4.19307 4.33907 4.37863 4.51634 4.62751 4.72635 4.77176 4.82446 4.95296 5.07881 5.11778 5.15288 5.21279 5.35339 5.36491 5.56093 6.11891 6.48714 6.84715 6.87149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.080 4.080 3 Si 0.781 3.219 4 C -0.134 4.134 5 C 0.133 3.867 6 O -0.310 6.310 7 C 0.063 3.937 8 C 0.466 3.534 9 O -0.524 6.524 10 O -0.345 6.345 11 C 0.077 3.923 12 C -0.102 4.102 13 H 0.122 0.878 14 C -0.163 4.163 15 C 0.075 3.925 16 H 0.104 0.896 17 O -0.583 6.583 18 C -0.126 4.126 19 C -0.206 4.206 20 C -0.072 4.072 21 C -0.155 4.155 22 C -0.104 4.104 23 H 0.397 0.603 24 H 0.066 0.934 25 H -0.286 1.286 26 H -0.281 1.281 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.396 0.604 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.817 -3.795 -2.701 5.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.188 4.188 3 Si 0.685 3.315 4 C -0.134 4.134 5 C 0.088 3.912 6 O -0.224 6.224 7 C -0.012 4.012 8 C 0.309 3.691 9 O -0.412 6.412 10 O -0.261 6.261 11 C 0.004 3.996 12 C -0.120 4.120 13 H 0.140 0.860 14 C -0.200 4.200 15 C 0.017 3.983 16 H 0.122 0.878 17 O -0.392 6.392 18 C -0.163 4.163 19 C -0.224 4.224 20 C -0.090 4.090 21 C -0.173 4.173 22 C -0.122 4.122 23 H 0.247 0.753 24 H 0.085 0.915 25 H -0.213 1.213 26 H -0.209 1.209 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.182 0.818 37 H 0.180 0.820 38 H 0.167 0.833 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.747 -2.857 -2.951 4.463 hybrid contribution 0.355 -0.850 -0.100 0.926 sum 2.102 -3.706 -3.050 5.240 Atomic orbital electron populations 1.86441 1.17595 1.82559 1.50637 1.24858 0.85739 1.11607 0.96636 0.94130 0.77472 0.75094 0.84827 1.19046 1.05524 0.91286 0.97589 1.18896 0.94322 0.90592 0.87385 1.86081 1.78444 1.18204 1.39646 1.22201 1.05204 0.79406 0.94373 1.23370 0.75752 0.81359 0.88642 1.90729 1.46258 1.63406 1.40856 1.86427 1.74895 1.21810 1.43009 1.23256 0.98558 0.94232 0.83564 1.22367 0.98690 0.90390 1.00586 0.86034 1.23783 0.96720 0.98582 1.00960 1.23438 0.94740 0.95295 0.84866 0.87785 1.86489 1.60859 1.61969 1.29860 1.23108 0.99114 0.96631 0.97451 1.21705 1.04833 1.02262 0.93629 1.21434 0.95349 0.93608 0.98605 1.21396 1.02013 0.95647 0.98210 1.21025 0.98363 0.99380 0.93440 0.75264 0.91549 1.21274 1.20853 0.84768 0.84483 0.91469 0.90799 0.89541 0.90336 0.75392 0.90045 0.88953 0.81774 0.82012 0.83304 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -4.25 12.86 -148.98 -1.92 -6.16 16 2 C -0.08 -0.53 2.37 71.24 0.17 -0.36 16 3 Si 0.78 1.26 30.20 68.60 2.07 3.33 16 4 C -0.13 -1.20 5.30 -19.77 -0.10 -1.30 16 5 C 0.13 0.93 6.66 22.51 0.15 1.08 16 6 O -0.31 -2.52 9.00 -73.36 -0.66 -3.18 16 7 C 0.06 -0.02 5.33 71.24 0.38 0.36 16 8 C 0.47 2.52 8.03 71.24 0.57 3.10 16 9 O -0.52 -7.32 16.25 28.40 0.46 -6.86 16 10 O -0.34 -0.71 10.22 -51.44 -0.53 -1.24 16 11 C 0.08 0.10 5.29 71.98 0.38 0.48 16 12 C -0.10 0.31 4.01 -10.27 -0.04 0.27 16 13 H 0.12 -0.68 8.14 -2.39 -0.02 -0.70 16 14 C -0.16 0.48 7.48 31.18 0.23 0.71 16 15 C 0.08 -0.21 5.21 31.18 0.16 -0.05 16 16 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 17 O -0.58 -0.39 13.68 -148.98 -2.04 -2.42 16 18 C -0.13 0.25 7.48 31.12 0.23 0.49 16 19 C -0.21 -0.11 9.04 22.37 0.20 0.09 16 20 C -0.07 0.04 10.04 22.25 0.22 0.27 16 21 C -0.15 -0.35 10.04 22.28 0.22 -0.13 16 22 C -0.10 -0.70 8.66 22.26 0.19 -0.51 16 23 H 0.40 -0.97 8.74 -74.06 -0.65 -1.61 16 24 H 0.07 0.46 7.82 -2.38 -0.02 0.44 16 25 H -0.29 -1.84 7.11 99.48 0.71 -1.13 16 26 H -0.28 -1.82 6.75 99.48 0.67 -1.15 16 27 H 0.13 -0.79 7.65 -2.39 -0.02 -0.81 16 28 H 0.14 -0.92 7.67 -2.39 -0.02 -0.94 16 29 H 0.07 0.21 7.87 -2.39 -0.02 0.19 16 30 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 31 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.08 -0.01 7.92 -2.38 -0.02 -0.03 16 33 H 0.40 -3.01 9.12 -74.06 -0.68 -3.68 16 34 H 0.08 0.06 8.10 -2.38 -0.02 0.04 16 35 H 0.09 -0.38 8.14 -2.39 -0.02 -0.40 16 36 H 0.16 -1.10 6.30 -2.91 -0.02 -1.12 16 37 H 0.16 -1.13 8.06 -2.91 -0.02 -1.16 16 38 H 0.15 -0.37 8.06 -2.91 -0.02 -0.39 16 39 H 0.13 0.74 4.90 -2.91 -0.01 0.73 16 Total: 0.00 -24.93 333.91 0.14 -24.79 By element: Atomic # 1 Polarization: -12.52 SS G_CDS: -0.23 Total: -12.75 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 2.98 Total: 4.50 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -4.68 Total: -19.86 kcal Atomic # 14 Polarization: 1.26 SS G_CDS: 2.07 Total: 3.33 kcal Total: -24.93 0.14 -24.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_473460_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.166 kcal (2) G-P(sol) polarization free energy of solvation -24.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds