Wall clock time and date at job start Sat Mar 6 2021 09:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86297 * 109.47206 * 2 1 4 4 C 1.86305 * 109.46732 * 240.00247 * 2 1 3 5 5 C 1.86298 * 109.47176 * 120.00298 * 2 1 3 6 6 O 1.45202 * 109.46895 * 59.99927 * 5 2 1 7 7 C 1.34227 * 117.00184 * 75.00246 * 6 5 2 8 8 O 1.20827 * 119.99678 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99926 * 179.97438 * 7 6 5 10 10 O 1.42903 * 109.47218 * 180.02562 * 9 7 6 11 11 C 1.35897 * 117.00214 * 179.97438 * 10 9 7 12 12 C 1.38709 * 120.05637 * 359.95484 * 11 10 9 13 13 C 1.38172 * 119.94642 * 179.97438 * 12 11 10 14 14 C 1.38245 * 120.05216 * 0.02562 * 13 12 11 15 15 C 1.38287 * 120.11339 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.05453 * 359.95334 * 15 14 13 17 17 C 1.50699 * 120.02390 * 180.02562 * 16 15 14 18 18 O 1.42895 * 109.47124 * 105.00291 * 17 16 15 19 19 Si 1.86302 * 109.47415 * 344.99961 * 17 16 15 20 20 H 1.48504 * 109.46711 * 300.00285 * 19 17 16 21 21 H 1.48499 * 109.47007 * 59.99977 * 19 17 16 22 22 H 1.48500 * 109.46966 * 180.02562 * 19 17 16 23 23 H 1.09000 * 109.46892 * 300.00029 * 1 2 3 24 24 H 1.09003 * 109.47107 * 59.99753 * 1 2 3 25 25 H 1.08995 * 109.47097 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47150 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47290 * 300.00135 * 3 2 1 28 28 H 1.09000 * 109.47219 * 60.00171 * 3 2 1 29 29 H 1.09004 * 109.47052 * 299.99397 * 4 2 1 30 30 H 1.08994 * 109.47356 * 60.00356 * 4 2 1 31 31 H 1.09000 * 109.46731 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46943 * 299.99642 * 5 2 1 33 33 H 1.08994 * 109.46972 * 179.97438 * 5 2 1 34 34 H 1.08997 * 109.47633 * 60.00022 * 9 7 6 35 35 H 1.09008 * 109.47230 * 299.99696 * 9 7 6 36 36 H 1.08002 * 120.02844 * 0.04164 * 12 11 10 37 37 H 1.08002 * 119.97211 * 180.29545 * 13 12 11 38 38 H 1.07997 * 119.93859 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.97069 * 179.97438 * 15 14 13 40 40 H 1.09005 * 109.46839 * 225.00112 * 17 16 15 41 41 H 0.96704 * 114.00130 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5213 5 6 2.4841 -0.8783 1.5211 6 8 2.0000 -2.2473 1.5210 7 6 2.5942 -3.1037 0.6753 8 8 3.4888 -2.7219 -0.0415 9 6 2.1455 -4.5412 0.6198 10 8 2.9243 -5.2463 -0.3488 11 6 2.6452 -6.5648 -0.5237 12 6 1.6431 -7.1676 0.2222 13 6 1.3608 -8.5082 0.0422 14 6 2.0766 -9.2486 -0.8801 15 6 3.0768 -8.6502 -1.6242 16 6 3.3625 -7.3103 -1.4483 17 6 4.4523 -6.6587 -2.2600 18 8 3.8662 -5.8433 -3.2766 19 14 5.5085 -7.9740 -3.0509 20 1 6.1175 -8.8213 -1.9943 21 1 4.6673 -8.8171 -3.9379 22 1 6.5827 -7.3318 -3.8502 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2703 -0.8900 28 1 2.1208 2.2703 0.8900 29 1 2.1207 -1.9059 -1.5212 30 1 2.1207 -0.3643 -2.4112 31 1 3.5740 -0.8786 -1.5210 32 1 2.1208 -0.3645 2.4111 33 1 3.5740 -0.8787 1.5208 34 1 1.0928 -4.5828 0.3402 35 1 2.2799 -5.0018 1.5986 36 1 1.0832 -6.5894 0.9424 37 1 0.5774 -8.9769 0.6193 38 1 1.8547 -10.2964 -1.0190 39 1 3.6348 -9.2309 -2.3438 40 1 5.0697 -6.0399 -1.6088 41 1 4.5106 -5.3916 -3.8386 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_473460_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:30:49 Heat of formation + Delta-G solvation = -151.043538 kcal Electronic energy + Delta-G solvation = -22509.743426 eV Core-core repulsion = 19093.695059 eV Total energy + Delta-G solvation = -3416.048367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.79707 -41.03874 -38.68536 -37.40680 -37.25065 -32.88887 -31.51238 -30.24899 -29.58028 -28.49798 -28.33440 -27.51278 -26.58381 -23.74843 -22.49227 -21.83428 -19.46957 -18.42263 -18.37249 -17.98710 -17.89894 -16.94235 -16.76742 -16.48134 -15.71615 -15.46707 -15.02802 -14.75811 -14.53247 -14.25503 -14.15179 -14.06784 -13.85012 -13.77503 -13.64644 -13.42050 -13.27218 -13.08729 -13.05058 -12.87301 -12.70640 -12.55252 -12.19528 -12.05441 -11.76698 -11.68396 -11.37366 -10.92884 -10.76440 -10.44733 -10.16483 -9.96259 -9.21801 0.22601 0.41032 1.02515 1.10317 1.20715 1.48466 1.48543 1.53618 1.80544 1.82499 1.94076 2.51143 2.52907 2.66611 3.50218 3.60477 3.75963 3.84068 3.86742 3.92775 4.11900 4.14306 4.25519 4.32426 4.49886 4.59292 4.63409 4.64874 4.66851 4.71139 4.73428 4.91816 4.95958 4.97408 5.24919 5.29458 5.34943 5.41104 5.48853 5.49783 5.67583 5.77017 6.24917 6.72516 6.74922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.998 3.002 3 C -0.446 4.446 4 C -0.436 4.436 5 C -0.237 4.237 6 O -0.334 6.334 7 C 0.446 3.554 8 O -0.464 6.464 9 C 0.066 3.934 10 O -0.282 6.282 11 C 0.153 3.847 12 C -0.211 4.211 13 C -0.072 4.072 14 C -0.148 4.148 15 C -0.084 4.084 16 C -0.102 4.102 17 C -0.072 4.072 18 O -0.540 6.540 19 Si 0.945 3.055 20 H -0.249 1.249 21 H -0.248 1.248 22 H -0.255 1.255 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 -0.211 2.235 2.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.194 2.806 3 C -0.554 4.554 4 C -0.545 4.545 5 C -0.355 4.355 6 O -0.250 6.250 7 C 0.287 3.713 8 O -0.350 6.350 9 C -0.011 4.011 10 O -0.195 6.195 11 C 0.108 3.892 12 C -0.229 4.229 13 C -0.091 4.091 14 C -0.167 4.167 15 C -0.102 4.102 16 C -0.102 4.102 17 C -0.183 4.183 18 O -0.345 6.345 19 Si 0.767 3.233 20 H -0.172 1.172 21 H -0.172 1.172 22 H -0.179 1.179 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.024 -0.811 1.869 2.280 hybrid contribution 0.143 0.603 0.268 0.676 sum -0.881 -0.208 2.137 2.321 Atomic orbital electron populations 1.26062 1.19997 1.04685 1.04645 0.79726 0.67710 0.67207 0.65949 1.26036 1.06522 1.17997 1.04876 1.26244 1.07058 1.07348 1.13807 1.28411 1.05432 0.83303 1.18396 1.86363 1.59169 1.21415 1.58092 1.22861 0.81502 0.88333 0.78609 1.90726 1.27737 1.77534 1.38962 1.21884 0.96934 0.87579 0.94684 1.86129 1.57400 1.19532 1.56468 1.18672 0.93908 0.82073 0.94585 1.21308 1.00851 0.97048 1.03728 1.21026 0.98250 0.93067 0.96709 1.21055 0.97181 1.00615 0.97803 1.20975 0.97407 0.93240 0.98591 1.18602 1.00051 0.93080 0.98508 1.24574 0.99018 1.01594 0.93081 1.86516 1.36680 1.65133 1.46205 0.85826 0.78103 0.78532 0.80811 1.17205 1.17160 1.17937 0.91049 0.90897 0.91106 0.90944 0.90593 0.91044 0.91447 0.91832 0.90435 0.86954 0.89956 0.87531 0.87606 0.84958 0.85173 0.85197 0.85161 0.90572 0.77511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.45 8.65 101.05 0.87 1.33 16 2 Si 1.00 -1.45 12.12 -169.99 -2.06 -3.51 16 3 C -0.45 0.62 8.65 101.05 0.87 1.49 16 4 C -0.44 -0.61 7.10 101.05 0.72 0.10 16 5 C -0.24 0.15 5.40 101.05 0.55 0.70 16 6 O -0.33 -0.25 9.92 -39.25 -0.39 -0.64 16 7 C 0.45 0.81 6.82 36.00 0.25 1.05 16 8 O -0.46 -2.02 12.17 -25.48 -0.31 -2.33 16 9 C 0.07 -0.01 5.33 36.00 0.19 0.18 16 10 O -0.28 -0.85 9.00 -39.37 -0.35 -1.21 16 11 C 0.15 0.39 6.66 -39.22 -0.26 0.13 16 12 C -0.21 -0.09 9.04 -39.43 -0.36 -0.45 16 13 C -0.07 0.01 10.04 -39.60 -0.40 -0.39 16 14 C -0.15 -0.06 10.04 -39.56 -0.40 -0.46 16 15 C -0.08 -0.13 8.66 -39.61 -0.34 -0.48 16 16 C -0.10 -0.29 5.30 -104.47 -0.55 -0.84 16 17 C -0.07 -0.14 2.37 36.01 0.09 -0.05 16 18 O -0.54 -1.44 12.86 -35.23 -0.45 -1.90 16 19 Si 0.94 0.50 25.49 -169.99 -4.33 -3.84 16 20 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 21 H -0.25 -0.28 6.73 56.52 0.38 0.10 16 22 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 23 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.49 16 25 H 0.07 -0.04 7.96 -51.93 -0.41 -0.46 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 0.19 6.28 -51.93 -0.33 -0.13 16 30 H 0.06 0.05 7.96 -51.93 -0.41 -0.36 16 31 H 0.08 0.20 7.43 -51.93 -0.39 -0.19 16 32 H 0.11 -0.29 7.96 -51.93 -0.41 -0.71 16 33 H 0.08 -0.01 7.52 -51.93 -0.39 -0.40 16 34 H 0.11 -0.25 7.66 -51.93 -0.40 -0.65 16 35 H 0.11 -0.27 7.66 -51.92 -0.40 -0.67 16 36 H 0.13 -0.29 6.30 -52.49 -0.33 -0.62 16 37 H 0.13 -0.31 8.06 -52.49 -0.42 -0.74 16 38 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 39 H 0.13 0.04 4.89 -52.49 -0.26 -0.22 16 40 H 0.08 0.13 7.83 -51.93 -0.41 -0.28 16 41 H 0.38 -0.55 8.74 45.56 0.40 -0.15 16 LS Contribution 340.70 15.07 5.13 5.13 Total: 0.00 -7.26 340.70 -7.00 -14.26 By element: Atomic # 1 Polarization: -2.84 SS G_CDS: -5.46 Total: -8.30 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 1.23 Total: 2.32 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -1.51 Total: -6.07 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -6.39 Total: -7.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -7.26 -7.00 -14.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_473460_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.779 kcal (2) G-P(sol) polarization free energy of solvation -7.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds