Wall clock time and date at job start Sat Mar 6 2021 09:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86297 * 109.47206 * 2 1 4 4 C 1.86305 * 109.46732 * 240.00247 * 2 1 3 5 5 C 1.86298 * 109.47176 * 120.00298 * 2 1 3 6 6 O 1.45202 * 109.46895 * 59.99927 * 5 2 1 7 7 C 1.34227 * 117.00184 * 75.00246 * 6 5 2 8 8 O 1.20827 * 119.99678 * 359.97438 * 7 6 5 9 9 C 1.50693 * 119.99926 * 179.97438 * 7 6 5 10 10 O 1.42903 * 109.47218 * 180.02562 * 9 7 6 11 11 C 1.35897 * 117.00214 * 179.97438 * 10 9 7 12 12 C 1.38709 * 120.05637 * 359.95484 * 11 10 9 13 13 C 1.38172 * 119.94642 * 179.97438 * 12 11 10 14 14 C 1.38245 * 120.05216 * 0.02562 * 13 12 11 15 15 C 1.38287 * 120.11339 * 0.02562 * 14 13 12 16 16 C 1.38125 * 120.05453 * 359.95334 * 15 14 13 17 17 C 1.50699 * 120.02390 * 180.02562 * 16 15 14 18 18 O 1.42895 * 109.47124 * 105.00291 * 17 16 15 19 19 Si 1.86302 * 109.47415 * 344.99961 * 17 16 15 20 20 H 1.48504 * 109.46711 * 300.00285 * 19 17 16 21 21 H 1.48499 * 109.47007 * 59.99977 * 19 17 16 22 22 H 1.48500 * 109.46966 * 180.02562 * 19 17 16 23 23 H 1.09000 * 109.46892 * 300.00029 * 1 2 3 24 24 H 1.09003 * 109.47107 * 59.99753 * 1 2 3 25 25 H 1.08995 * 109.47097 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47150 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47290 * 300.00135 * 3 2 1 28 28 H 1.09000 * 109.47219 * 60.00171 * 3 2 1 29 29 H 1.09004 * 109.47052 * 299.99397 * 4 2 1 30 30 H 1.08994 * 109.47356 * 60.00356 * 4 2 1 31 31 H 1.09000 * 109.46731 * 180.02562 * 4 2 1 32 32 H 1.09000 * 109.46943 * 299.99642 * 5 2 1 33 33 H 1.08994 * 109.46972 * 179.97438 * 5 2 1 34 34 H 1.08997 * 109.47633 * 60.00022 * 9 7 6 35 35 H 1.09008 * 109.47230 * 299.99696 * 9 7 6 36 36 H 1.08002 * 120.02844 * 0.04164 * 12 11 10 37 37 H 1.08002 * 119.97211 * 180.29545 * 13 12 11 38 38 H 1.07997 * 119.93859 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.97069 * 179.97438 * 15 14 13 40 40 H 1.09005 * 109.46839 * 225.00112 * 17 16 15 41 41 H 0.96704 * 114.00130 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8782 -1.5213 5 6 2.4841 -0.8783 1.5211 6 8 2.0000 -2.2473 1.5210 7 6 2.5942 -3.1037 0.6753 8 8 3.4888 -2.7219 -0.0415 9 6 2.1455 -4.5412 0.6198 10 8 2.9243 -5.2463 -0.3488 11 6 2.6452 -6.5648 -0.5237 12 6 1.6431 -7.1676 0.2222 13 6 1.3608 -8.5082 0.0422 14 6 2.0766 -9.2486 -0.8801 15 6 3.0768 -8.6502 -1.6242 16 6 3.3625 -7.3103 -1.4483 17 6 4.4523 -6.6587 -2.2600 18 8 3.8662 -5.8433 -3.2766 19 14 5.5085 -7.9740 -3.0509 20 1 6.1175 -8.8213 -1.9943 21 1 4.6673 -8.8171 -3.9379 22 1 6.5827 -7.3318 -3.8502 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.5740 1.7564 -0.0005 27 1 2.1207 2.2703 -0.8900 28 1 2.1208 2.2703 0.8900 29 1 2.1207 -1.9059 -1.5212 30 1 2.1207 -0.3643 -2.4112 31 1 3.5740 -0.8786 -1.5210 32 1 2.1208 -0.3645 2.4111 33 1 3.5740 -0.8787 1.5208 34 1 1.0928 -4.5828 0.3402 35 1 2.2799 -5.0018 1.5986 36 1 1.0832 -6.5894 0.9424 37 1 0.5774 -8.9769 0.6193 38 1 1.8547 -10.2964 -1.0190 39 1 3.6348 -9.2309 -2.3438 40 1 5.0697 -6.0399 -1.6088 41 1 4.5106 -5.3916 -3.8386 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_473460_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:30:49 Heat of formation + Delta-G solvation = -145.457408 kcal Electronic energy + Delta-G solvation = -22509.501194 eV Core-core repulsion = 19093.695059 eV Total energy + Delta-G solvation = -3415.806135 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87028 -41.09707 -38.73329 -37.53234 -37.36805 -32.92080 -31.52540 -30.26210 -29.54121 -28.41782 -28.36993 -27.46758 -26.64957 -23.77780 -22.53042 -21.89682 -19.50043 -18.53374 -18.47436 -18.05133 -17.96603 -16.97978 -16.77513 -16.51794 -15.76562 -15.49602 -15.06661 -14.79317 -14.56876 -14.30862 -14.11087 -14.03942 -13.84417 -13.77920 -13.64414 -13.40015 -13.25879 -13.11886 -13.05392 -12.90421 -12.67573 -12.58592 -12.22977 -12.09796 -11.81779 -11.76385 -11.47898 -10.86369 -10.78229 -10.42760 -10.28037 -9.98717 -9.26159 0.20024 0.37596 1.01004 1.03595 1.12776 1.42663 1.47491 1.55711 1.84858 1.86745 1.91220 2.52454 2.54835 2.64887 3.48872 3.59790 3.78578 3.91270 3.94944 3.96770 4.15143 4.22557 4.24220 4.31295 4.49674 4.63186 4.67871 4.73009 4.76352 4.79801 4.80944 4.82165 4.86339 4.94645 5.22607 5.25112 5.35274 5.49399 5.51890 5.59802 5.62558 5.70136 6.23589 6.64533 6.76821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.060 2.940 3 C -0.452 4.452 4 C -0.457 4.457 5 C -0.255 4.255 6 O -0.331 6.331 7 C 0.444 3.556 8 O -0.499 6.499 9 C 0.059 3.941 10 O -0.309 6.309 11 C 0.132 3.868 12 C -0.211 4.211 13 C -0.075 4.075 14 C -0.154 4.154 15 C -0.099 4.099 16 C -0.131 4.131 17 C -0.082 4.082 18 O -0.561 6.561 19 Si 0.987 3.013 20 H -0.254 1.254 21 H -0.256 1.256 22 H -0.259 1.259 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.159 0.841 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.137 0.863 40 H 0.068 0.932 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -0.365 3.479 4.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.252 2.748 3 C -0.560 4.560 4 C -0.562 4.562 5 C -0.372 4.372 6 O -0.247 6.247 7 C 0.286 3.714 8 O -0.387 6.387 9 C -0.016 4.016 10 O -0.222 6.222 11 C 0.087 3.913 12 C -0.229 4.229 13 C -0.092 4.092 14 C -0.172 4.172 15 C -0.117 4.117 16 C -0.131 4.131 17 C -0.191 4.191 18 O -0.369 6.369 19 Si 0.809 3.191 20 H -0.178 1.178 21 H -0.180 1.180 22 H -0.183 1.183 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.155 0.845 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.154 0.846 40 H 0.086 0.914 41 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.273 -0.973 3.100 3.966 hybrid contribution 0.515 0.667 -0.116 0.851 sum -1.759 -0.306 2.985 3.478 Atomic orbital electron populations 1.26128 1.20049 1.04647 1.05253 0.78798 0.66869 0.66101 0.63057 1.26081 1.06419 1.17976 1.05535 1.26587 1.05957 1.06976 1.16671 1.28707 1.05251 0.82922 1.20299 1.86363 1.58905 1.21921 1.57549 1.23336 0.80908 0.89181 0.77954 1.90717 1.29383 1.78238 1.40347 1.22182 0.97652 0.86251 0.95525 1.86080 1.58482 1.20081 1.57580 1.18920 0.94926 0.82040 0.95415 1.21642 1.00136 0.97589 1.03551 1.21407 0.98477 0.92897 0.96467 1.21397 0.96600 1.01738 0.97431 1.21164 0.98222 0.92998 0.99301 1.18912 1.00928 0.93923 0.99372 1.24794 0.99277 1.01984 0.93055 1.86466 1.38075 1.65646 1.46712 0.85214 0.76907 0.77172 0.79762 1.17770 1.17977 1.18321 0.89909 0.90824 0.91491 0.91236 0.90520 0.89795 0.93295 0.91812 0.92285 0.84466 0.90706 0.85222 0.84923 0.82393 0.82500 0.83163 0.84584 0.91393 0.75982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.23 8.65 113.37 0.98 2.21 16 2 Si 1.06 -2.86 12.12 68.60 0.83 -2.03 16 3 C -0.45 1.46 8.65 113.37 0.98 2.44 16 4 C -0.46 -2.32 7.10 113.37 0.81 -1.52 16 5 C -0.25 0.34 5.40 113.37 0.61 0.96 16 6 O -0.33 -0.50 9.92 -51.39 -0.51 -1.01 16 7 C 0.44 2.09 6.82 71.23 0.49 2.57 16 8 O -0.50 -5.53 12.17 28.39 0.35 -5.18 16 9 C 0.06 0.00 5.33 71.23 0.38 0.38 16 10 O -0.31 -2.35 9.00 -73.31 -0.66 -3.01 16 11 C 0.13 0.81 6.66 22.51 0.15 0.96 16 12 C -0.21 -0.05 9.04 22.37 0.20 0.15 16 13 C -0.07 0.10 10.04 22.26 0.22 0.32 16 14 C -0.15 -0.05 10.04 22.28 0.22 0.17 16 15 C -0.10 -0.39 8.66 22.25 0.19 -0.20 16 16 C -0.13 -0.94 5.30 -19.77 -0.10 -1.04 16 17 C -0.08 -0.49 2.37 71.24 0.17 -0.32 16 18 O -0.56 -4.33 12.86 -148.98 -1.92 -6.25 16 19 Si 0.99 2.13 25.49 68.60 1.75 3.88 16 20 H -0.25 -0.68 7.11 99.48 0.71 0.03 16 21 H -0.26 -0.79 6.73 99.48 0.67 -0.12 16 22 H -0.26 -0.58 7.11 99.48 0.71 0.13 16 23 H 0.08 -0.39 7.96 -2.39 -0.02 -0.40 16 24 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 25 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 26 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 27 H 0.08 -0.23 7.96 -2.39 -0.02 -0.25 16 28 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H 0.05 0.42 6.28 -2.38 -0.01 0.40 16 30 H 0.06 0.24 7.96 -2.39 -0.02 0.23 16 31 H 0.06 0.49 7.43 -2.39 -0.02 0.47 16 32 H 0.14 -0.91 7.96 -2.39 -0.02 -0.93 16 33 H 0.07 0.04 7.52 -2.39 -0.02 0.02 16 34 H 0.13 -0.67 7.66 -2.39 -0.02 -0.69 16 35 H 0.13 -0.79 7.66 -2.38 -0.02 -0.80 16 36 H 0.16 -0.97 6.30 -2.91 -0.02 -0.99 16 37 H 0.16 -1.13 8.06 -2.91 -0.02 -1.15 16 38 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 39 H 0.14 0.20 4.89 -2.91 -0.01 0.19 16 40 H 0.07 0.43 7.83 -2.38 -0.02 0.41 16 41 H 0.39 -0.20 8.74 -74.05 -0.65 -0.85 16 Total: 0.00 -18.74 340.70 6.24 -12.50 By element: Atomic # 1 Polarization: -7.10 SS G_CDS: 1.10 Total: -6.00 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 5.30 Total: 7.10 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -2.74 Total: -15.45 kcal Atomic # 14 Polarization: -0.73 SS G_CDS: 2.58 Total: 1.85 kcal Total: -18.74 6.24 -12.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_473460_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.953 kcal (2) G-P(sol) polarization free energy of solvation -18.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds