Wall clock time and date at job start Sat Mar 6 2021 10:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42912 * 1 3 3 Si 1.86293 * 109.47080 * 2 1 4 4 C 1.50697 * 109.46996 * 239.99848 * 2 1 3 5 5 C 1.38367 * 119.85003 * 300.00260 * 4 2 1 6 6 C 1.37946 * 120.14794 * 179.97438 * 5 4 2 7 7 C 1.39633 * 119.84910 * 359.97438 * 6 5 4 8 8 C 1.47728 * 120.14801 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99688 * 0.02562 * 8 7 6 10 10 O 1.34709 * 119.99984 * 179.97438 * 8 7 6 11 11 C 1.45195 * 117.00171 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47201 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84949 * 45.33704 * 12 11 10 14 14 C 1.53781 * 113.61707 * 176.53264 * 12 11 10 15 15 C 1.53777 * 87.08336 * 140.06298 * 14 12 11 16 16 H 1.09008 * 113.61204 * 89.11878 * 15 14 12 17 17 O 1.42896 * 113.61697 * 219.93327 * 15 14 12 18 18 C 1.53775 * 87.07992 * 334.56762 * 15 14 12 19 19 C 1.39622 * 119.70066 * 0.27448 * 7 6 5 20 20 C 1.37948 * 119.84827 * 359.45020 * 19 7 6 21 21 H 0.96689 * 113.99745 * 59.99945 * 1 2 3 22 22 H 1.09003 * 109.46631 * 120.00100 * 2 1 3 23 23 H 1.48506 * 109.99964 * 59.99892 * 3 2 1 24 24 H 1.48503 * 110.00041 * 181.31789 * 3 2 1 25 25 H 1.07998 * 119.92396 * 359.97438 * 5 4 2 26 26 H 1.08000 * 120.07213 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.46656 * 60.00691 * 11 10 8 28 28 H 1.08992 * 109.47332 * 300.00724 * 11 10 8 29 29 H 1.08997 * 113.61673 * 254.61847 * 14 12 11 30 30 H 1.09009 * 113.61202 * 25.43077 * 14 12 11 31 31 H 0.96694 * 114.00132 * 179.97438 * 17 15 14 32 32 H 1.08993 * 113.61636 * 270.87622 * 18 15 14 33 33 H 1.09008 * 113.61006 * 139.97865 * 18 15 14 34 34 H 1.08002 * 120.07898 * 179.72311 * 19 7 6 35 35 H 1.07997 * 119.92603 * 180.24982 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5952 -2.0352 -1.4463 6 6 2.0512 -2.6913 -2.5708 7 6 2.8533 -2.0154 -3.4925 8 6 3.3447 -2.7115 -4.6992 9 8 3.0508 -3.8743 -4.8917 10 8 4.1179 -2.0564 -5.5867 11 6 4.5651 -2.8031 -6.7489 12 6 5.4256 -1.9002 -7.6351 13 1 6.1570 -1.3240 -7.0685 14 6 6.0214 -2.6218 -8.8554 15 6 5.7181 -1.3463 -9.6591 16 1 6.5296 -0.6186 -9.6459 17 8 5.2243 -1.6029 -10.9753 18 6 4.6128 -1.0553 -8.6303 19 6 3.1930 -0.6802 -3.2658 20 6 2.7255 -0.0345 -2.1400 21 1 -0.3932 0.4417 -0.7650 22 1 1.7924 -0.5139 0.8900 23 1 1.5615 2.4678 1.2085 24 1 3.5347 1.7702 -0.0321 25 1 0.9744 -2.5566 -0.7328 26 1 1.7883 -3.7254 -2.7378 27 1 3.6992 -3.1486 -7.3138 28 1 5.1536 -3.6613 -6.4250 29 1 7.0860 -2.8350 -8.7598 30 1 5.4432 -3.4889 -9.1752 31 1 5.0314 -0.8045 -11.4855 32 1 3.6489 -1.4930 -8.8895 33 1 4.5404 -0.0036 -8.3530 34 1 3.8167 -0.1529 -3.9724 35 1 2.9842 0.9994 -1.9654 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_479212_11354868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:39:18 Heat of formation + Delta-G solvation = -112.028674 kcal Electronic energy + Delta-G solvation = -19266.007008 eV Core-core repulsion = 16003.631034 eV Total energy + Delta-G solvation = -3262.375975 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.108 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.69583 -40.60844 -40.03922 -37.77270 -37.35776 -36.01709 -33.09748 -32.24635 -29.77425 -27.52184 -26.84322 -24.32297 -23.89291 -23.19380 -21.77466 -20.68250 -19.11173 -18.69480 -18.52276 -17.74507 -17.44288 -16.78169 -16.49864 -16.26243 -16.03046 -15.76188 -15.31550 -15.11102 -14.83567 -14.40664 -14.16997 -13.81722 -13.58807 -13.54952 -13.39225 -12.85387 -12.52903 -12.42638 -12.24486 -12.18738 -11.88552 -11.72086 -11.50351 -11.28234 -10.83021 -10.62207 -10.17409 -10.06689 -5.13361 -0.49561 0.20334 1.16272 1.44357 1.52688 1.54644 1.88351 2.59989 3.10175 3.29383 3.33877 3.42644 3.46459 3.55313 3.68880 3.79731 3.81864 3.88139 4.10808 4.16563 4.16804 4.29141 4.35537 4.40932 4.55217 4.61673 4.67597 4.68072 4.82783 4.86463 5.00336 5.03908 5.15503 5.25783 5.26882 5.40971 5.65105 6.44213 6.63548 6.71945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.075 4.075 3 Si 0.691 3.309 4 C -0.084 4.084 5 C -0.104 4.104 6 C -0.053 4.053 7 C -0.122 4.122 8 C 0.509 3.491 9 O -0.503 6.503 10 O -0.351 6.351 11 C 0.080 3.920 12 C -0.111 4.111 13 H 0.107 0.893 14 C -0.120 4.120 15 C 0.076 3.924 16 H 0.085 0.915 17 O -0.560 6.560 18 C -0.164 4.164 19 C -0.055 4.055 20 C -0.132 4.132 21 H 0.381 0.619 22 H 0.118 0.882 23 H -0.253 1.253 24 H -0.256 1.256 25 H 0.138 0.862 26 H 0.141 0.859 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.381 0.619 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.143 0.857 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.817 4.945 -1.484 5.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.185 4.185 3 Si 0.592 3.408 4 C -0.085 4.085 5 C -0.122 4.122 6 C -0.071 4.071 7 C -0.123 4.123 8 C 0.353 3.647 9 O -0.392 6.392 10 O -0.267 6.267 11 C 0.007 3.993 12 C -0.129 4.129 13 H 0.125 0.875 14 C -0.158 4.158 15 C 0.017 3.983 16 H 0.103 0.897 17 O -0.365 6.365 18 C -0.201 4.201 19 C -0.073 4.073 20 C -0.149 4.149 21 H 0.228 0.772 22 H 0.136 0.864 23 H -0.178 1.178 24 H -0.181 1.181 25 H 0.156 0.844 26 H 0.159 0.841 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.228 0.772 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.401 4.257 -0.408 4.500 hybrid contribution 0.073 -0.230 -0.063 0.250 sum 1.475 4.026 -0.471 4.314 Atomic orbital electron populations 1.86528 1.16700 1.81691 1.49319 1.25176 0.85558 1.10429 0.97355 0.94671 0.81030 0.77649 0.87409 1.20702 0.96442 0.95029 0.96286 1.21015 0.99836 0.93873 0.97493 1.21370 0.93281 1.00493 0.91932 1.19169 1.03630 0.95089 0.94449 1.21156 0.75746 0.84928 0.82826 1.90866 1.55239 1.17281 1.75764 1.86508 1.62301 1.44994 1.32932 1.23107 0.98408 0.94121 0.83693 1.22371 0.98496 0.98113 0.93956 0.87509 1.23071 1.02050 0.97797 0.92868 1.23283 0.95641 0.97753 0.81594 0.89695 1.86530 1.87008 1.36384 1.26616 1.23785 0.99226 1.00980 0.96159 1.21436 0.96443 0.92907 0.96557 1.21034 0.99207 0.99998 0.94668 0.77182 0.86421 1.17759 1.18084 0.84435 0.84122 0.90621 0.90635 0.90026 0.88683 0.77177 0.89019 0.90647 0.83887 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.42 12.76 -35.23 -0.45 -0.03 16 2 C -0.07 0.10 2.82 36.00 0.10 0.20 16 3 Si 0.69 -1.46 29.77 -169.99 -5.06 -6.52 16 4 C -0.08 0.07 5.40 -104.53 -0.56 -0.49 16 5 C -0.10 0.01 9.59 -39.64 -0.38 -0.37 16 6 C -0.05 -0.05 9.60 -39.17 -0.38 -0.42 16 7 C -0.12 -0.16 5.87 -104.98 -0.62 -0.77 16 8 C 0.51 1.48 7.90 34.61 0.27 1.76 16 9 O -0.50 -2.83 16.14 -19.24 -0.31 -3.14 16 10 O -0.35 -0.53 9.47 -40.51 -0.38 -0.91 16 11 C 0.08 0.03 5.30 37.16 0.20 0.23 16 12 C -0.11 0.14 4.02 -89.81 -0.36 -0.22 16 13 H 0.11 -0.22 8.14 -51.93 -0.42 -0.64 16 14 C -0.12 0.12 7.47 -25.92 -0.19 -0.07 16 15 C 0.08 -0.09 5.21 -25.92 -0.14 -0.22 16 16 H 0.09 -0.22 8.14 -51.92 -0.42 -0.64 16 17 O -0.56 -0.19 13.67 -35.23 -0.48 -0.67 16 18 C -0.16 0.22 7.47 -25.92 -0.19 0.02 16 19 C -0.06 0.04 9.62 -39.17 -0.38 -0.34 16 20 C -0.13 0.20 8.65 -39.64 -0.34 -0.15 16 21 H 0.38 -1.76 8.70 45.56 0.40 -1.36 16 22 H 0.12 -0.11 7.96 -51.93 -0.41 -0.53 16 23 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 24 H -0.26 -0.02 7.11 56.52 0.40 0.38 16 25 H 0.14 -0.12 8.06 -52.49 -0.42 -0.54 16 26 H 0.14 0.12 7.65 -52.49 -0.40 -0.29 16 27 H 0.08 0.07 7.87 -51.93 -0.41 -0.34 16 28 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 30 H 0.09 -0.01 8.10 -51.92 -0.42 -0.43 16 31 H 0.38 -1.41 9.12 45.56 0.42 -1.00 16 32 H 0.09 -0.04 7.92 -51.93 -0.41 -0.45 16 33 H 0.07 -0.15 8.14 -51.92 -0.42 -0.58 16 34 H 0.14 -0.32 7.61 -52.49 -0.40 -0.71 16 35 H 0.14 -0.48 4.86 -52.49 -0.25 -0.73 16 LS Contribution 303.50 15.07 4.57 4.57 Total: 0.00 -7.59 303.50 -8.71 -16.30 By element: Atomic # 1 Polarization: -5.12 SS G_CDS: -3.63 Total: -8.75 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.97 Total: -0.85 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -1.63 Total: -4.75 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: -5.06 Total: -6.52 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -7.59 -8.71 -16.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_11354868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.729 kcal (2) G-P(sol) polarization free energy of solvation -7.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds