Wall clock time and date at job start Sat Mar 6 2021 10:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42912 * 1 3 3 Si 1.86293 * 109.47080 * 2 1 4 4 C 1.50697 * 109.46996 * 239.99848 * 2 1 3 5 5 C 1.38367 * 119.85003 * 300.00260 * 4 2 1 6 6 C 1.37946 * 120.14794 * 179.97438 * 5 4 2 7 7 C 1.39633 * 119.84910 * 359.97438 * 6 5 4 8 8 C 1.47728 * 120.14801 * 180.02562 * 7 6 5 9 9 O 1.21473 * 119.99688 * 0.02562 * 8 7 6 10 10 O 1.34709 * 119.99984 * 179.97438 * 8 7 6 11 11 C 1.45195 * 117.00171 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47201 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84949 * 45.33704 * 12 11 10 14 14 C 1.53781 * 113.61707 * 176.53264 * 12 11 10 15 15 C 1.53777 * 87.08336 * 140.06298 * 14 12 11 16 16 H 1.09008 * 113.61204 * 89.11878 * 15 14 12 17 17 O 1.42896 * 113.61697 * 219.93327 * 15 14 12 18 18 C 1.53775 * 87.07992 * 334.56762 * 15 14 12 19 19 C 1.39622 * 119.70066 * 0.27448 * 7 6 5 20 20 C 1.37948 * 119.84827 * 359.45020 * 19 7 6 21 21 H 0.96689 * 113.99745 * 59.99945 * 1 2 3 22 22 H 1.09003 * 109.46631 * 120.00100 * 2 1 3 23 23 H 1.48506 * 109.99964 * 59.99892 * 3 2 1 24 24 H 1.48503 * 110.00041 * 181.31789 * 3 2 1 25 25 H 1.07998 * 119.92396 * 359.97438 * 5 4 2 26 26 H 1.08000 * 120.07213 * 179.97438 * 6 5 4 27 27 H 1.09001 * 109.46656 * 60.00691 * 11 10 8 28 28 H 1.08992 * 109.47332 * 300.00724 * 11 10 8 29 29 H 1.08997 * 113.61673 * 254.61847 * 14 12 11 30 30 H 1.09009 * 113.61202 * 25.43077 * 14 12 11 31 31 H 0.96694 * 114.00132 * 179.97438 * 17 15 14 32 32 H 1.08993 * 113.61636 * 270.87622 * 18 15 14 33 33 H 1.09008 * 113.61006 * 139.97865 * 18 15 14 34 34 H 1.08002 * 120.07898 * 179.72311 * 19 7 6 35 35 H 1.07997 * 119.92603 * 180.24982 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 -1.2304 5 6 1.5952 -2.0352 -1.4463 6 6 2.0512 -2.6913 -2.5708 7 6 2.8533 -2.0154 -3.4925 8 6 3.3447 -2.7115 -4.6992 9 8 3.0508 -3.8743 -4.8917 10 8 4.1179 -2.0564 -5.5867 11 6 4.5651 -2.8031 -6.7489 12 6 5.4256 -1.9002 -7.6351 13 1 6.1570 -1.3240 -7.0685 14 6 6.0214 -2.6218 -8.8554 15 6 5.7181 -1.3463 -9.6591 16 1 6.5296 -0.6186 -9.6459 17 8 5.2243 -1.6029 -10.9753 18 6 4.6128 -1.0553 -8.6303 19 6 3.1930 -0.6802 -3.2658 20 6 2.7255 -0.0345 -2.1400 21 1 -0.3932 0.4417 -0.7650 22 1 1.7924 -0.5139 0.8900 23 1 1.5615 2.4678 1.2085 24 1 3.5347 1.7702 -0.0321 25 1 0.9744 -2.5566 -0.7328 26 1 1.7883 -3.7254 -2.7378 27 1 3.6992 -3.1486 -7.3138 28 1 5.1536 -3.6613 -6.4250 29 1 7.0860 -2.8350 -8.7598 30 1 5.4432 -3.4889 -9.1752 31 1 5.0314 -0.8045 -11.4855 32 1 3.6489 -1.4930 -8.8895 33 1 4.5404 -0.0036 -8.3530 34 1 3.8167 -0.1529 -3.9724 35 1 2.9842 0.9994 -1.9654 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_11354868.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:39:17 Heat of formation + Delta-G solvation = -111.241527 kcal Electronic energy + Delta-G solvation = -19265.972875 eV Core-core repulsion = 16003.631034 eV Total energy + Delta-G solvation = -3262.341841 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.82445 -40.55134 -40.03104 -37.78317 -37.44855 -35.98919 -33.09313 -32.20927 -29.79050 -27.49801 -26.74245 -24.32495 -23.85013 -23.17557 -21.83032 -20.59618 -19.16589 -18.73129 -18.44869 -17.80351 -17.58811 -16.73255 -16.40350 -16.18631 -16.00290 -15.71735 -15.28651 -15.14995 -14.76017 -14.43919 -14.17499 -13.82645 -13.59144 -13.47672 -13.42396 -12.83969 -12.47236 -12.39904 -12.23311 -12.19439 -11.85763 -11.75611 -11.62851 -11.21874 -10.73750 -10.53899 -10.13418 -10.05234 -4.98012 -0.53428 0.24917 1.27459 1.34135 1.43128 1.65579 1.99119 2.59682 3.19834 3.37639 3.43893 3.52143 3.57029 3.61600 3.77394 3.86296 3.89701 3.95018 4.15605 4.19307 4.22181 4.31953 4.38791 4.44235 4.63748 4.67229 4.75122 4.79358 4.90257 4.97200 5.04517 5.11060 5.16882 5.26684 5.31536 5.39409 5.69555 6.53934 6.74893 6.89322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.081 4.081 3 Si 0.781 3.219 4 C -0.080 4.080 5 C -0.110 4.110 6 C -0.063 4.063 7 C -0.140 4.140 8 C 0.509 3.491 9 O -0.540 6.540 10 O -0.344 6.344 11 C 0.077 3.923 12 C -0.102 4.102 13 H 0.121 0.879 14 C -0.126 4.126 15 C 0.076 3.924 16 H 0.105 0.895 17 O -0.584 6.584 18 C -0.161 4.161 19 C -0.049 4.049 20 C -0.127 4.127 21 H 0.397 0.603 22 H 0.113 0.887 23 H -0.302 1.302 24 H -0.279 1.279 25 H 0.141 0.859 26 H 0.132 0.868 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.396 0.604 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 6.590 -1.534 6.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.362 6.362 2 C -0.191 4.191 3 Si 0.687 3.313 4 C -0.081 4.081 5 C -0.128 4.128 6 C -0.081 4.081 7 C -0.141 4.141 8 C 0.356 3.644 9 O -0.432 6.432 10 O -0.261 6.261 11 C 0.003 3.997 12 C -0.120 4.120 13 H 0.139 0.861 14 C -0.164 4.164 15 C 0.017 3.983 16 H 0.123 0.877 17 O -0.392 6.392 18 C -0.199 4.199 19 C -0.067 4.067 20 C -0.145 4.145 21 H 0.247 0.753 22 H 0.130 0.870 23 H -0.230 1.230 24 H -0.206 1.206 25 H 0.159 0.841 26 H 0.150 0.850 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.246 0.754 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.179 0.821 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.940 5.910 -0.494 6.240 hybrid contribution -0.124 -0.722 -0.003 0.733 sum 1.817 5.187 -0.497 5.519 Atomic orbital electron populations 1.86495 1.16893 1.82182 1.50586 1.25343 0.85566 1.11264 0.96900 0.93651 0.78016 0.74658 0.84995 1.20826 0.96099 0.94677 0.96477 1.21086 1.00037 0.94419 0.97227 1.21379 0.93833 1.00382 0.92523 1.19215 1.04698 0.96098 0.94111 1.21528 0.75172 0.84566 0.83181 1.90842 1.56774 1.18866 1.76668 1.86507 1.61837 1.44782 1.32940 1.23216 0.98301 0.94651 0.83523 1.22354 0.98358 0.97775 0.93514 0.86074 1.23110 1.02428 0.97655 0.93188 1.23405 0.96082 0.97814 0.81005 0.87747 1.86486 1.87224 1.38075 1.27439 1.23741 0.98587 1.01496 0.96086 1.21644 0.96043 0.91983 0.97027 1.21277 0.98317 1.00986 0.93880 0.75269 0.86971 1.22988 1.20563 0.84088 0.84992 0.91596 0.91009 0.89066 0.90119 0.75394 0.90395 0.89423 0.82078 0.82260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.22 12.76 -148.98 -1.90 -0.68 16 2 C -0.08 0.27 2.82 71.23 0.20 0.47 16 3 Si 0.78 -4.13 29.77 68.60 2.04 -2.09 16 4 C -0.08 0.20 5.40 -19.80 -0.11 0.09 16 5 C -0.11 -0.02 9.59 22.23 0.21 0.20 16 6 C -0.06 -0.19 9.60 22.54 0.22 0.03 16 7 C -0.14 -0.43 5.87 -20.10 -0.12 -0.55 16 8 C 0.51 3.60 7.90 70.33 0.56 4.16 16 9 O -0.54 -7.26 16.14 19.92 0.32 -6.94 16 10 O -0.34 -1.19 9.47 -56.18 -0.53 -1.72 16 11 C 0.08 0.14 5.30 71.98 0.38 0.52 16 12 C -0.10 0.28 4.02 -10.27 -0.04 0.24 16 13 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 14 C -0.13 0.23 7.47 31.12 0.23 0.46 16 15 C 0.08 -0.21 5.21 31.12 0.16 -0.05 16 16 H 0.10 -0.70 8.14 -2.38 -0.02 -0.72 16 17 O -0.58 -0.39 13.67 -148.98 -2.04 -2.42 16 18 C -0.16 0.47 7.47 31.12 0.23 0.71 16 19 C -0.05 0.11 9.62 22.54 0.22 0.33 16 20 C -0.13 0.58 8.65 22.23 0.19 0.77 16 21 H 0.40 -4.10 8.70 -74.06 -0.64 -4.74 16 22 H 0.11 -0.25 7.96 -2.39 -0.02 -0.27 16 23 H -0.30 -0.91 7.11 99.48 0.71 -0.21 16 24 H -0.28 0.36 7.11 99.48 0.71 1.07 16 25 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 26 H 0.13 0.52 7.65 -2.91 -0.02 0.50 16 27 H 0.07 0.24 7.87 -2.39 -0.02 0.22 16 28 H 0.07 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.08 0.08 8.10 -2.38 -0.02 0.06 16 31 H 0.40 -3.03 9.12 -74.06 -0.68 -3.71 16 32 H 0.08 0.00 7.92 -2.39 -0.02 -0.02 16 33 H 0.09 -0.47 8.14 -2.38 -0.02 -0.49 16 34 H 0.16 -1.00 7.61 -2.91 -0.02 -1.03 16 35 H 0.16 -1.54 4.86 -2.91 -0.01 -1.56 16 Total: 0.00 -18.49 303.50 0.07 -18.42 By element: Atomic # 1 Polarization: -11.78 SS G_CDS: -0.16 Total: -11.94 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 2.34 Total: 7.38 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -4.15 Total: -11.77 kcal Atomic # 14 Polarization: -4.13 SS G_CDS: 2.04 Total: -2.09 kcal Total: -18.49 0.07 -18.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_11354868.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.826 kcal (2) G-P(sol) polarization free energy of solvation -18.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds