Wall clock time and date at job start Sat Mar 6 2021 07:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47184 * 2 1 4 4 C 1.50701 * 109.46759 * 240.00276 * 2 1 3 5 5 C 1.38359 * 119.85104 * 299.99702 * 4 2 1 6 6 C 1.37947 * 120.15192 * 179.74859 * 5 4 2 7 7 C 1.39625 * 119.84562 * 0.25520 * 6 5 4 8 8 C 1.47727 * 120.14655 * 179.97438 * 7 6 5 9 9 O 1.21471 * 120.00232 * 359.97438 * 8 7 6 10 10 O 1.34711 * 119.99778 * 180.02562 * 8 7 6 11 11 C 1.45199 * 116.99825 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46999 * 179.97438 * 11 10 8 13 13 O 1.20755 * 120.00393 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00168 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.46971 * 45.93214 * 14 12 11 16 16 C 1.52997 * 109.47495 * 165.93385 * 14 12 11 17 17 C 1.53001 * 109.47026 * 59.99882 * 16 14 12 18 18 C 1.53005 * 109.46694 * 60.00470 * 17 16 14 19 19 H 1.08995 * 109.47565 * 59.99771 * 18 17 16 20 20 C 1.53001 * 109.46694 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.47127 * 59.99949 * 20 18 17 22 22 F 1.39910 * 109.46794 * 179.97438 * 20 18 17 23 23 F 1.39900 * 109.47329 * 299.99716 * 20 18 17 24 24 C 1.52997 * 109.47000 * 299.99545 * 18 17 16 25 25 C 1.53001 * 109.47026 * 60.00658 * 24 18 17 26 26 C 1.39620 * 119.70339 * 0.02562 * 7 6 5 27 27 C 1.37943 * 119.84649 * 359.97438 * 26 7 6 28 28 H 0.96698 * 113.99881 * 299.99879 * 1 2 3 29 29 H 1.08998 * 109.47416 * 120.00145 * 2 1 3 30 30 H 1.48499 * 110.00221 * 178.68102 * 3 2 1 31 31 H 1.48494 * 110.00298 * 300.00445 * 3 2 1 32 32 H 1.07999 * 119.92538 * 0.02835 * 5 4 2 33 33 H 1.08001 * 120.07286 * 180.23550 * 6 5 4 34 34 H 1.09004 * 109.46870 * 299.99412 * 11 10 8 35 35 H 1.09000 * 109.47649 * 59.99545 * 11 10 8 36 36 H 1.09001 * 109.47556 * 180.02562 * 16 14 12 37 37 H 1.09002 * 109.47193 * 300.00121 * 16 14 12 38 38 H 1.08999 * 109.47130 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47068 * 300.00439 * 17 16 14 40 40 H 1.09002 * 109.47193 * 180.02562 * 24 18 17 41 41 H 1.09001 * 109.47556 * 300.00517 * 24 18 17 42 42 H 1.08999 * 109.47130 * 179.97438 * 25 24 18 43 43 H 1.08995 * 109.47735 * 59.99604 * 25 24 18 44 44 H 1.07999 * 120.08118 * 180.02562 * 26 7 6 45 45 H 1.08005 * 119.92420 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5951 -2.0350 -1.4464 6 6 2.0472 -2.6898 -2.5733 7 6 2.8501 -2.0142 -3.4944 8 6 3.3383 -2.7091 -4.7032 9 8 3.0418 -3.8709 -4.8973 10 8 4.1132 -2.0545 -5.5896 11 6 4.5560 -2.7997 -6.7545 12 6 5.4052 -1.9110 -7.6263 13 8 5.6151 -0.7675 -7.2999 14 6 5.9924 -2.4492 -8.9056 15 1 5.2266 -2.9975 -9.4544 16 6 6.5005 -1.2877 -9.7620 17 6 7.5753 -0.5181 -8.9917 18 6 8.7382 -1.4568 -8.6638 19 1 9.1629 -1.8461 -9.5890 20 6 9.8133 -0.6870 -7.8940 21 9 9.2686 -0.1869 -6.7064 22 9 10.8765 -1.5455 -7.5937 23 9 10.2778 0.3748 -8.6775 24 6 8.2302 -2.6183 -7.8074 25 6 7.1553 -3.3879 -8.5777 26 6 3.1903 -0.6792 -3.2674 27 6 2.7314 -0.0366 -2.1363 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5138 0.8899 30 1 3.5346 1.7703 0.0321 31 1 1.5615 2.4680 -1.2084 32 1 0.9737 -2.5563 -0.7334 33 1 1.7809 -3.7227 -2.7425 34 1 5.1417 -3.6612 -6.4336 35 1 3.6883 -3.1403 -7.3194 36 1 6.9248 -1.6770 -10.6875 37 1 5.6720 -0.6190 -9.9957 38 1 7.9369 0.3097 -9.6016 39 1 7.1505 -0.1288 -8.0664 40 1 9.0587 -3.2868 -7.5734 41 1 7.8054 -2.2290 -6.8821 42 1 6.7937 -4.2157 -7.9678 43 1 7.5799 -3.7773 -9.5030 44 1 3.8106 -0.1507 -3.9760 45 1 2.9935 0.9962 -1.9597 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_479212_12428076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:05:28 Heat of formation + Delta-G solvation = -277.598834 kcal Electronic energy + Delta-G solvation = -34355.790567 eV Core-core repulsion = 29083.034008 eV Total energy + Delta-G solvation = -5272.756560 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.127 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.00913 -48.50014 -48.45792 -42.08666 -41.43581 -40.25760 -38.53698 -37.71533 -37.34641 -33.71505 -33.24773 -32.29997 -32.18033 -30.31075 -27.72392 -26.81362 -24.35744 -24.10166 -23.90080 -23.43406 -22.15983 -21.75246 -20.36280 -19.35275 -19.16498 -18.98203 -18.64480 -18.54079 -18.35900 -17.86814 -17.24960 -16.81146 -16.69056 -16.61164 -16.03745 -15.84259 -15.50599 -15.46542 -15.26683 -15.23120 -15.01571 -14.85985 -14.68712 -14.64009 -14.62972 -14.54053 -14.24854 -14.17907 -13.90856 -13.75244 -13.67325 -13.52358 -13.47484 -13.37059 -12.95974 -12.55668 -12.39168 -12.28213 -12.21198 -12.03616 -11.96607 -11.67874 -11.60051 -11.51384 -10.54206 -10.42509 -10.18026 -10.02940 -5.05182 -0.53109 0.19502 0.65342 1.16140 1.23201 1.36005 1.57786 1.80805 1.89152 2.54693 2.63071 2.82161 2.93354 3.05112 3.18538 3.36095 3.43926 3.48046 3.62347 3.66700 3.70506 3.75952 3.82976 3.84799 3.92074 3.95143 3.98937 4.02558 4.11926 4.16370 4.22053 4.24284 4.36141 4.41426 4.57795 4.58512 4.61865 4.71874 4.81465 4.82827 4.91392 4.93051 4.96783 5.08791 5.22367 5.24396 5.27143 5.62935 6.27406 6.49049 6.58419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.079 4.079 3 Si 0.684 3.316 4 C -0.037 4.037 5 C -0.102 4.102 6 C -0.049 4.049 7 C -0.125 4.125 8 C 0.512 3.488 9 O -0.500 6.500 10 O -0.335 6.335 11 C 0.014 3.986 12 C 0.359 3.641 13 O -0.413 6.413 14 C -0.133 4.133 15 H 0.111 0.889 16 C -0.099 4.099 17 C -0.145 4.145 18 C -0.130 4.130 19 H 0.114 0.886 20 C 0.452 3.548 21 F -0.180 7.180 22 F -0.185 7.185 23 F -0.183 7.183 24 C -0.129 4.129 25 C -0.105 4.105 26 C -0.051 4.051 27 C -0.138 4.138 28 H 0.385 0.615 29 H 0.081 0.919 30 H -0.252 1.252 31 H -0.248 1.248 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.145 0.855 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -1.216 1.110 2.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.350 6.350 2 C -0.189 4.189 3 Si 0.585 3.415 4 C -0.037 4.037 5 C -0.120 4.120 6 C -0.067 4.067 7 C -0.126 4.126 8 C 0.357 3.643 9 O -0.389 6.389 10 O -0.251 6.251 11 C -0.060 4.060 12 C 0.232 3.768 13 O -0.283 6.283 14 C -0.152 4.152 15 H 0.129 0.871 16 C -0.137 4.137 17 C -0.182 4.182 18 C -0.149 4.149 19 H 0.133 0.867 20 C 0.398 3.602 21 F -0.162 7.162 22 F -0.166 7.166 23 F -0.164 7.164 24 C -0.166 4.166 25 C -0.143 4.143 26 C -0.069 4.069 27 C -0.156 4.156 28 H 0.233 0.767 29 H 0.099 0.901 30 H -0.177 1.177 31 H -0.173 1.173 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.106 0.894 44 H 0.163 0.837 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.557 -0.631 0.229 1.696 hybrid contribution 0.300 -0.699 -0.168 0.779 sum -1.257 -1.330 0.061 1.831 Atomic orbital electron populations 1.86481 1.16759 1.81906 1.49892 1.24767 0.86118 1.10733 0.97290 0.95188 0.80829 0.77804 0.87681 1.19714 0.95205 0.94297 0.94461 1.20996 0.99548 0.93778 0.97630 1.21361 0.93057 1.00495 0.91821 1.19072 1.04148 0.94997 0.94405 1.21201 0.75458 0.84889 0.82721 1.90864 1.55248 1.17100 1.75693 1.86623 1.62466 1.44017 1.31983 1.23549 1.00606 0.95939 0.85948 1.24492 0.77597 0.88179 0.86544 1.90344 1.48780 1.18891 1.70303 1.21742 0.99510 0.99092 0.94825 0.87055 1.21370 0.98823 0.95789 0.97671 1.22089 0.94021 0.97456 1.04598 1.22493 0.94985 0.97251 1.00179 0.86747 1.20626 0.82683 0.78351 0.78526 1.93195 1.85468 1.88360 1.49131 1.93187 1.59629 1.70071 1.93748 1.93187 1.89966 1.58920 1.74375 1.21712 1.00045 0.96192 0.98657 1.21488 0.93786 0.96918 1.02067 1.21433 0.96219 0.92997 0.96262 1.20895 1.00132 0.99622 0.94910 0.76651 0.90109 1.17718 1.17260 0.84175 0.83834 0.87437 0.87358 0.90320 0.90417 0.90477 0.86996 0.89667 0.90643 0.90051 0.89359 0.83705 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.36 12.74 -35.23 -0.45 -0.09 16 2 C -0.08 0.07 2.81 36.01 0.10 0.17 16 3 Si 0.68 -1.07 29.77 -169.99 -5.06 -6.13 16 4 C -0.04 -0.06 5.43 -104.53 -0.57 -0.63 16 5 C -0.10 -0.13 9.59 -39.64 -0.38 -0.51 16 6 C -0.05 -0.09 9.60 -39.17 -0.38 -0.47 16 7 C -0.13 -0.33 5.87 -104.99 -0.62 -0.95 16 8 C 0.51 1.66 7.90 34.61 0.27 1.93 16 9 O -0.50 -2.40 16.14 -19.24 -0.31 -2.71 16 10 O -0.33 -0.80 9.01 -47.22 -0.43 -1.22 16 11 C 0.01 -0.01 5.87 36.01 0.21 0.20 16 12 C 0.36 -0.26 5.12 -29.03 -0.15 -0.40 16 13 O -0.41 -1.05 13.37 -13.71 -0.18 -1.23 16 14 C -0.13 0.45 2.94 -91.77 -0.27 0.19 16 15 H 0.11 -0.62 8.14 -51.93 -0.42 -1.05 16 16 C -0.10 0.25 5.21 -26.73 -0.14 0.11 16 17 C -0.14 0.08 4.67 -26.73 -0.12 -0.04 16 18 C -0.13 0.13 2.16 -90.62 -0.20 -0.06 16 19 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 20 C 0.45 0.77 2.69 37.16 0.10 0.87 16 21 F -0.18 -0.62 16.28 2.25 0.04 -0.58 16 22 F -0.18 -0.44 16.80 2.25 0.04 -0.40 16 23 F -0.18 -0.50 16.80 2.25 0.04 -0.47 16 24 C -0.13 0.24 4.74 -26.73 -0.13 0.11 16 25 C -0.11 0.43 5.42 -26.73 -0.14 0.28 16 26 C -0.05 -0.11 9.62 -39.17 -0.38 -0.49 16 27 C -0.14 -0.28 8.65 -39.64 -0.34 -0.62 16 28 H 0.39 -2.18 8.74 45.56 0.40 -1.78 16 29 H 0.08 -0.22 7.96 -51.93 -0.41 -0.63 16 30 H -0.25 -0.22 7.11 56.52 0.40 0.18 16 31 H -0.25 -0.43 7.11 56.52 0.40 -0.02 16 32 H 0.14 -0.04 8.06 -52.49 -0.42 -0.46 16 33 H 0.14 0.14 7.65 -52.49 -0.40 -0.26 16 34 H 0.11 -0.23 7.84 -51.93 -0.41 -0.64 16 35 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 36 H 0.08 -0.31 8.14 -51.93 -0.42 -0.73 16 37 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 38 H 0.08 -0.04 7.80 -51.93 -0.41 -0.44 16 39 H 0.11 0.19 4.72 -51.93 -0.25 -0.05 16 40 H 0.08 -0.19 7.80 -51.93 -0.41 -0.60 16 41 H 0.07 -0.02 6.85 -51.93 -0.36 -0.38 16 42 H 0.08 -0.41 7.85 -51.93 -0.41 -0.82 16 43 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 44 H 0.15 0.19 7.61 -52.49 -0.40 -0.21 16 45 H 0.13 0.16 4.86 -52.48 -0.25 -0.09 16 LS Contribution 380.00 15.07 5.73 5.73 Total: 0.00 -9.09 380.00 -9.17 -18.26 By element: Atomic # 1 Polarization: -5.39 SS G_CDS: -5.45 Total: -10.84 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.12 Total: -0.30 kcal Atomic # 8 Polarization: -3.89 SS G_CDS: -1.37 Total: -5.26 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.11 Total: -1.45 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.06 Total: -6.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -9.09 -9.17 -18.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_12428076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -259.342 kcal (2) G-P(sol) polarization free energy of solvation -9.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -268.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -277.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds