Wall clock time and date at job start Sat Mar 6 2021 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.47184 * 2 1 4 4 C 1.50701 * 109.46759 * 240.00276 * 2 1 3 5 5 C 1.38359 * 119.85104 * 299.99702 * 4 2 1 6 6 C 1.37947 * 120.15192 * 179.74859 * 5 4 2 7 7 C 1.39625 * 119.84562 * 0.25520 * 6 5 4 8 8 C 1.47727 * 120.14655 * 179.97438 * 7 6 5 9 9 O 1.21471 * 120.00232 * 359.97438 * 8 7 6 10 10 O 1.34711 * 119.99778 * 180.02562 * 8 7 6 11 11 C 1.45199 * 116.99825 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.46999 * 179.97438 * 11 10 8 13 13 O 1.20755 * 120.00393 * 359.97438 * 12 11 10 14 14 C 1.50703 * 120.00168 * 179.97438 * 12 11 10 15 15 H 1.09004 * 109.46971 * 45.93214 * 14 12 11 16 16 C 1.52997 * 109.47495 * 165.93385 * 14 12 11 17 17 C 1.53001 * 109.47026 * 59.99882 * 16 14 12 18 18 C 1.53005 * 109.46694 * 60.00470 * 17 16 14 19 19 H 1.08995 * 109.47565 * 59.99771 * 18 17 16 20 20 C 1.53001 * 109.46694 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.47127 * 59.99949 * 20 18 17 22 22 F 1.39910 * 109.46794 * 179.97438 * 20 18 17 23 23 F 1.39900 * 109.47329 * 299.99716 * 20 18 17 24 24 C 1.52997 * 109.47000 * 299.99545 * 18 17 16 25 25 C 1.53001 * 109.47026 * 60.00658 * 24 18 17 26 26 C 1.39620 * 119.70339 * 0.02562 * 7 6 5 27 27 C 1.37943 * 119.84649 * 359.97438 * 26 7 6 28 28 H 0.96698 * 113.99881 * 299.99879 * 1 2 3 29 29 H 1.08998 * 109.47416 * 120.00145 * 2 1 3 30 30 H 1.48499 * 110.00221 * 178.68102 * 3 2 1 31 31 H 1.48494 * 110.00298 * 300.00445 * 3 2 1 32 32 H 1.07999 * 119.92538 * 0.02835 * 5 4 2 33 33 H 1.08001 * 120.07286 * 180.23550 * 6 5 4 34 34 H 1.09004 * 109.46870 * 299.99412 * 11 10 8 35 35 H 1.09000 * 109.47649 * 59.99545 * 11 10 8 36 36 H 1.09001 * 109.47556 * 180.02562 * 16 14 12 37 37 H 1.09002 * 109.47193 * 300.00121 * 16 14 12 38 38 H 1.08999 * 109.47130 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47068 * 300.00439 * 17 16 14 40 40 H 1.09002 * 109.47193 * 180.02562 * 24 18 17 41 41 H 1.09001 * 109.47556 * 300.00517 * 24 18 17 42 42 H 1.08999 * 109.47130 * 179.97438 * 25 24 18 43 43 H 1.08995 * 109.47735 * 59.99604 * 25 24 18 44 44 H 1.07999 * 120.08118 * 180.02562 * 26 7 6 45 45 H 1.08005 * 119.92420 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.5951 -2.0350 -1.4464 6 6 2.0472 -2.6898 -2.5733 7 6 2.8501 -2.0142 -3.4944 8 6 3.3383 -2.7091 -4.7032 9 8 3.0418 -3.8709 -4.8973 10 8 4.1132 -2.0545 -5.5896 11 6 4.5560 -2.7997 -6.7545 12 6 5.4052 -1.9110 -7.6263 13 8 5.6151 -0.7675 -7.2999 14 6 5.9924 -2.4492 -8.9056 15 1 5.2266 -2.9975 -9.4544 16 6 6.5005 -1.2877 -9.7620 17 6 7.5753 -0.5181 -8.9917 18 6 8.7382 -1.4568 -8.6638 19 1 9.1629 -1.8461 -9.5890 20 6 9.8133 -0.6870 -7.8940 21 9 9.2686 -0.1869 -6.7064 22 9 10.8765 -1.5455 -7.5937 23 9 10.2778 0.3748 -8.6775 24 6 8.2302 -2.6183 -7.8074 25 6 7.1553 -3.3879 -8.5777 26 6 3.1903 -0.6792 -3.2674 27 6 2.7314 -0.0366 -2.1363 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5138 0.8899 30 1 3.5346 1.7703 0.0321 31 1 1.5615 2.4680 -1.2084 32 1 0.9737 -2.5563 -0.7334 33 1 1.7809 -3.7227 -2.7425 34 1 5.1417 -3.6612 -6.4336 35 1 3.6883 -3.1403 -7.3194 36 1 6.9248 -1.6770 -10.6875 37 1 5.6720 -0.6190 -9.9957 38 1 7.9369 0.3097 -9.6016 39 1 7.1505 -0.1288 -8.0664 40 1 9.0587 -3.2868 -7.5734 41 1 7.8054 -2.2290 -6.8821 42 1 6.7937 -4.2157 -7.9678 43 1 7.5799 -3.7773 -9.5030 44 1 3.8106 -0.1507 -3.9760 45 1 2.9935 0.9962 -1.9597 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_12428076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:05:27 Heat of formation + Delta-G solvation = -272.843107 kcal Electronic energy + Delta-G solvation = -34355.584344 eV Core-core repulsion = 29083.034008 eV Total energy + Delta-G solvation = -5272.550336 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.127 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.19624 -48.68756 -48.67773 -42.13910 -41.46436 -40.34983 -38.49305 -37.69749 -37.45627 -33.62631 -33.30553 -32.39646 -32.01699 -30.27466 -27.75897 -26.82273 -24.38791 -24.01395 -23.90975 -23.42640 -22.12698 -21.85429 -20.31311 -19.50694 -19.33697 -19.08149 -18.69618 -18.53195 -18.38134 -17.93304 -17.22851 -16.80568 -16.68098 -16.63635 -16.06037 -15.88156 -15.64582 -15.57797 -15.29686 -15.23952 -15.13371 -14.89241 -14.85163 -14.82544 -14.68201 -14.53971 -14.29387 -14.20365 -13.97466 -13.74642 -13.61581 -13.53842 -13.28554 -13.25982 -12.90460 -12.63818 -12.32830 -12.23598 -12.15023 -12.09320 -12.02356 -11.84516 -11.43713 -11.31667 -10.52182 -10.35449 -10.31104 -10.08049 -4.97199 -0.68191 0.06250 0.74877 1.15828 1.18380 1.27202 1.62498 1.72840 1.94669 2.42352 2.67415 2.79262 2.91378 2.99158 3.23244 3.37348 3.52368 3.59912 3.60895 3.64641 3.80022 3.82997 3.89068 3.96365 4.02068 4.04051 4.07163 4.12337 4.19783 4.23497 4.34765 4.37062 4.45282 4.54676 4.65312 4.71804 4.80376 4.82391 4.87391 4.95660 4.96556 5.06753 5.08935 5.11513 5.15798 5.16563 5.34069 5.52909 6.32005 6.45538 6.87541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.081 4.081 3 Si 0.770 3.230 4 C -0.047 4.047 5 C -0.102 4.102 6 C -0.052 4.052 7 C -0.141 4.141 8 C 0.515 3.485 9 O -0.520 6.520 10 O -0.347 6.347 11 C 0.002 3.998 12 C 0.362 3.638 13 O -0.454 6.454 14 C -0.127 4.127 15 H 0.144 0.856 16 C -0.098 4.098 17 C -0.146 4.146 18 C -0.122 4.122 19 H 0.139 0.861 20 C 0.443 3.557 21 F -0.196 7.196 22 F -0.190 7.190 23 F -0.192 7.192 24 C -0.131 4.131 25 C -0.101 4.101 26 C -0.056 4.056 27 C -0.153 4.153 28 H 0.407 0.593 29 H 0.107 0.893 30 H -0.288 1.288 31 H -0.298 1.298 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.144 0.856 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 -2.860 0.770 4.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.371 6.371 2 C -0.191 4.191 3 Si 0.677 3.323 4 C -0.048 4.048 5 C -0.120 4.120 6 C -0.070 4.070 7 C -0.142 4.142 8 C 0.361 3.639 9 O -0.411 6.411 10 O -0.264 6.264 11 C -0.071 4.071 12 C 0.237 3.763 13 O -0.327 6.327 14 C -0.145 4.145 15 H 0.162 0.838 16 C -0.135 4.135 17 C -0.183 4.183 18 C -0.141 4.141 19 H 0.157 0.843 20 C 0.389 3.611 21 F -0.177 7.177 22 F -0.171 7.171 23 F -0.173 7.173 24 C -0.168 4.168 25 C -0.138 4.138 26 C -0.074 4.074 27 C -0.170 4.170 28 H 0.259 0.741 29 H 0.125 0.875 30 H -0.215 1.215 31 H -0.226 1.226 32 H 0.177 0.823 33 H 0.169 0.831 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.115 0.885 43 H 0.130 0.870 44 H 0.162 0.838 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.234 -2.281 -0.084 3.194 hybrid contribution 0.549 -0.110 -0.072 0.564 sum -1.685 -2.391 -0.156 2.930 Atomic orbital electron populations 1.86431 1.16541 1.82460 1.51657 1.24832 0.86416 1.10811 0.97041 0.94326 0.77409 0.75610 0.84967 1.20108 0.94732 0.94738 0.95185 1.21231 0.99400 0.93714 0.97664 1.21530 0.92723 1.00857 0.91857 1.19200 1.04968 0.95263 0.94806 1.21271 0.75164 0.84597 0.82849 1.90836 1.56227 1.17771 1.76266 1.86619 1.62164 1.44751 1.32819 1.23937 1.01619 0.96313 0.85246 1.25011 0.76597 0.87473 0.87176 1.90360 1.50294 1.20616 1.71395 1.21832 1.00488 0.99022 0.93166 0.83807 1.21397 0.97909 0.95835 0.98348 1.22044 0.94826 0.97869 1.03592 1.22573 0.93784 0.96963 1.00759 0.84318 1.21202 0.83255 0.78331 0.78279 1.93162 1.85675 1.88655 1.50246 1.93168 1.60063 1.70063 1.93823 1.93162 1.90175 1.59548 1.74455 1.21759 1.00971 0.96051 0.98033 1.21556 0.92559 0.96597 1.03069 1.21471 0.96363 0.93087 0.96488 1.21031 1.00830 0.99835 0.95323 0.74100 0.87490 1.21516 1.22563 0.82321 0.83140 0.85864 0.85609 0.87943 0.91140 0.91100 0.89651 0.89181 0.92877 0.88524 0.86994 0.83774 0.85550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.40 12.74 -148.98 -1.90 -0.50 16 2 C -0.08 0.20 2.81 71.24 0.20 0.40 16 3 Si 0.77 -2.07 29.77 68.60 2.04 -0.03 16 4 C -0.05 -0.17 5.43 -19.80 -0.11 -0.27 16 5 C -0.10 -0.26 9.59 22.23 0.21 -0.04 16 6 C -0.05 -0.23 9.60 22.54 0.22 -0.01 16 7 C -0.14 -0.97 5.87 -20.10 -0.12 -1.09 16 8 C 0.52 4.04 7.90 70.33 0.56 4.60 16 9 O -0.52 -5.40 16.14 19.93 0.32 -5.08 16 10 O -0.35 -2.20 9.01 -49.81 -0.45 -2.65 16 11 C 0.00 0.00 5.87 71.24 0.42 0.42 16 12 C 0.36 -0.36 5.12 29.10 0.15 -0.21 16 13 O -0.45 -3.25 13.37 17.41 0.23 -3.02 16 14 C -0.13 1.06 2.94 -11.54 -0.03 1.02 16 15 H 0.14 -2.06 8.14 -2.38 -0.02 -2.08 16 16 C -0.10 0.58 5.21 30.59 0.16 0.74 16 17 C -0.15 0.04 4.67 30.60 0.14 0.18 16 18 C -0.12 0.24 2.16 -10.79 -0.02 0.22 16 19 H 0.14 -0.96 8.14 -2.39 -0.02 -0.98 16 20 C 0.44 2.10 2.69 71.98 0.19 2.29 16 21 F -0.20 -1.84 16.28 44.97 0.73 -1.11 16 22 F -0.19 -1.07 16.80 44.97 0.76 -0.31 16 23 F -0.19 -1.33 16.80 44.97 0.76 -0.57 16 24 C -0.13 0.52 4.74 30.59 0.15 0.66 16 25 C -0.10 1.03 5.42 30.60 0.17 1.20 16 26 C -0.06 -0.36 9.62 22.53 0.22 -0.14 16 27 C -0.15 -0.86 8.65 22.23 0.19 -0.67 16 28 H 0.41 -5.29 8.74 -74.06 -0.65 -5.94 16 29 H 0.11 -0.79 7.96 -2.39 -0.02 -0.80 16 30 H -0.29 -0.87 7.11 99.48 0.71 -0.16 16 31 H -0.30 -1.62 7.11 99.48 0.71 -0.91 16 32 H 0.16 -0.27 8.06 -2.91 -0.02 -0.29 16 33 H 0.15 0.36 7.65 -2.91 -0.02 0.34 16 34 H 0.12 -0.57 7.84 -2.39 -0.02 -0.59 16 35 H 0.13 -0.62 8.14 -2.39 -0.02 -0.64 16 36 H 0.10 -1.06 8.14 -2.39 -0.02 -1.08 16 37 H 0.07 -0.30 8.14 -2.39 -0.02 -0.32 16 38 H 0.07 0.03 7.80 -2.39 -0.02 0.01 16 39 H 0.09 0.50 4.72 -2.39 -0.01 0.49 16 40 H 0.09 -0.45 7.80 -2.39 -0.02 -0.47 16 41 H 0.05 0.04 6.85 -2.39 -0.02 0.03 16 42 H 0.10 -1.22 7.85 -2.39 -0.02 -1.24 16 43 H 0.11 -1.57 8.14 -2.39 -0.02 -1.59 16 44 H 0.14 0.80 7.61 -2.91 -0.02 0.77 16 45 H 0.13 0.60 4.86 -2.91 -0.01 0.59 16 Total: 0.00 -24.44 380.00 5.62 -18.82 By element: Atomic # 1 Polarization: -15.30 SS G_CDS: 0.45 Total: -14.86 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 2.68 Total: 9.29 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -1.79 Total: -11.24 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 2.24 Total: -1.99 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: 2.04 Total: -0.03 kcal Total: -24.44 5.62 -18.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_12428076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.023 kcal (2) G-P(sol) polarization free energy of solvation -24.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -278.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -272.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds