Wall clock time and date at job start Sat Mar 6 2021 07:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86295 * 109.46915 * 2 1 4 4 C 1.50699 * 109.46972 * 119.99751 * 2 1 3 5 5 C 1.38368 * 119.84836 * 244.72792 * 4 2 1 6 6 C 1.37948 * 120.14778 * 179.72290 * 5 4 2 7 7 C 1.39619 * 119.84902 * 0.55170 * 6 5 4 8 8 C 1.47730 * 120.15030 * 179.74772 * 7 6 5 9 9 O 1.21477 * 119.99845 * 179.97438 * 8 7 6 10 10 O 1.34705 * 120.00074 * 359.97438 * 8 7 6 11 11 C 1.45195 * 117.00155 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47206 * 179.97438 * 11 10 8 13 13 H 1.09007 * 109.47275 * 179.97438 * 12 11 10 14 14 O 1.42967 * 109.47070 * 299.99725 * 12 11 10 15 15 C 1.43096 * 113.77037 * 178.79357 * 14 12 11 16 16 C 1.53262 * 108.94378 * 302.03159 * 15 14 12 17 17 H 1.08994 * 109.68215 * 294.65408 * 16 15 14 18 18 N 1.46493 * 109.57546 * 174.33139 * 16 15 14 19 19 C 1.34526 * 124.46155 * 300.33786 * 18 16 15 20 20 O 1.21449 * 125.70862 * 0.03458 * 19 18 16 21 21 C 1.47814 * 108.58111 * 179.90593 * 19 18 16 22 22 C 1.40947 * 105.88215 * 0.34854 * 21 19 18 23 23 C 1.38565 * 119.82136 * 179.79856 * 22 21 19 24 24 C 1.38606 * 119.72160 * 359.97438 * 23 22 21 25 25 C 1.38228 * 120.45951 * 0.02562 * 24 23 22 26 26 C 1.38568 * 134.29807 * 180.10252 * 21 19 18 27 27 C 1.34524 * 124.46283 * 120.63968 * 18 16 15 28 28 O 1.21454 * 125.70666 * 359.96308 * 27 18 16 29 29 C 1.53266 * 108.84353 * 54.52400 * 16 15 14 30 30 O 1.42965 * 109.47585 * 59.99946 * 12 11 10 31 31 C 1.39635 * 119.70493 * 359.72058 * 7 6 5 32 32 C 1.37948 * 119.84096 * 0.02562 * 31 7 6 33 33 H 0.96696 * 114.00036 * 60.00219 * 1 2 3 34 34 H 1.09000 * 109.47187 * 239.99852 * 2 1 3 35 35 H 1.48504 * 110.00018 * 298.67819 * 3 2 1 36 36 H 1.48496 * 110.00262 * 59.99721 * 3 2 1 37 37 H 1.07999 * 119.92451 * 0.02562 * 5 4 2 38 38 H 1.08004 * 120.07222 * 180.27427 * 6 5 4 39 39 H 1.09004 * 109.47351 * 299.99489 * 11 10 8 40 40 H 1.09004 * 109.47654 * 59.99618 * 11 10 8 41 41 H 1.09000 * 109.55933 * 182.19273 * 15 14 12 42 42 H 1.09000 * 109.64898 * 61.92393 * 15 14 12 43 43 H 1.08002 * 120.13745 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.77220 * 180.02562 * 24 23 22 45 45 H 1.08006 * 119.77180 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.14220 * 0.25072 * 26 21 19 47 47 H 1.08997 * 109.55751 * 185.64014 * 29 16 15 48 48 H 1.08994 * 109.64614 * 65.36639 * 29 16 15 49 49 H 1.07989 * 120.08122 * 180.02562 * 31 7 6 50 50 H 1.07998 * 119.92126 * 179.97438 * 32 31 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6439 -0.0097 2.1875 6 6 3.1017 -0.6525 3.3190 7 6 2.8545 -2.0157 3.4918 8 6 3.3464 -2.7120 4.6982 9 8 3.1293 -3.8980 4.8460 10 8 4.0357 -2.0317 5.6345 11 6 4.4888 -2.7801 6.7932 12 6 5.2476 -1.8466 7.7386 13 1 5.5874 -2.4085 8.6087 14 8 6.3763 -1.2934 7.0575 15 6 7.1395 -0.3808 7.8529 16 6 6.2254 0.7577 8.3189 17 1 5.8933 1.3377 7.4579 18 7 6.9567 1.6270 9.2438 19 6 7.4976 1.2184 10.4058 20 8 7.4581 0.0876 10.8472 21 6 8.1506 2.3753 11.0539 22 6 7.9403 3.4700 10.1914 23 6 8.4371 4.7187 10.5291 24 6 9.1375 4.8822 11.7139 25 6 9.3438 3.8086 12.5598 26 6 8.8531 2.5536 12.2349 27 6 7.1708 2.9402 9.0459 28 8 6.7948 3.5830 8.0864 29 6 5.0097 0.1559 9.0323 30 8 4.3819 -0.7907 8.1621 31 6 2.1396 -2.7180 2.5194 32 6 1.6831 -2.0616 1.3952 33 1 -0.3933 0.4417 -0.7650 34 1 1.7924 -0.5139 -0.8900 35 1 1.5879 2.4585 -1.2243 36 1 1.5614 2.4679 1.2084 37 1 2.8380 1.0439 2.0506 38 1 3.6540 -0.1034 4.0673 39 1 3.6283 -3.2023 7.3123 40 1 5.1493 -3.5850 6.4705 41 1 7.9561 0.0274 7.2574 42 1 7.5451 -0.9014 8.7203 43 1 8.2793 5.5610 9.8717 44 1 9.5247 5.8552 11.9781 45 1 9.8907 3.9487 13.4806 46 1 9.0170 1.7184 12.8998 47 1 4.3032 0.9480 9.2804 48 1 5.3314 -0.3451 9.9452 49 1 1.9445 -3.7724 2.6470 50 1 1.1304 -2.6036 0.6421 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_13594054.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:48:15 Heat of formation + Delta-G solvation = -161.084063 kcal Electronic energy + Delta-G solvation = -40500.900952 eV Core-core repulsion = 35006.267068 eV Total energy + Delta-G solvation = -5494.633884 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 426.133 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.70760 -41.87249 -41.18516 -40.23881 -39.94539 -39.47086 -37.88525 -37.56224 -37.17611 -37.10486 -34.56533 -33.27072 -32.24866 -32.16173 -31.69528 -29.94803 -27.67091 -27.50319 -26.34964 -25.44428 -24.49110 -23.85435 -23.49971 -23.43187 -22.36079 -21.75507 -20.99695 -19.32259 -19.17180 -18.98131 -18.88569 -18.59941 -18.37201 -17.71350 -17.70033 -17.27915 -17.19476 -17.02839 -16.73666 -16.54907 -16.34384 -16.17547 -15.92099 -15.67777 -15.48518 -15.32969 -15.32517 -15.06483 -14.80974 -14.79094 -14.66057 -14.59366 -14.46841 -14.04974 -13.87876 -13.80323 -13.57840 -13.40426 -13.28116 -12.84350 -12.69201 -12.63154 -12.47962 -12.24967 -12.22655 -11.89738 -11.83552 -11.77363 -11.69838 -11.60689 -10.97570 -10.86275 -10.57291 -10.25794 -10.24524 -10.15048 -10.05744 -4.93148 -1.11195 -0.53766 -0.06011 0.24578 0.87387 0.88848 1.23917 1.33124 1.38388 1.58918 1.61738 1.93757 2.17158 2.23035 2.44596 2.55629 2.57319 3.07209 3.14902 3.22302 3.25403 3.39211 3.46049 3.53766 3.67154 3.71452 3.77456 3.83893 3.87210 3.93303 4.04174 4.04814 4.06725 4.14823 4.15031 4.19157 4.21161 4.25809 4.30711 4.42322 4.44671 4.45389 4.54678 4.65839 4.80502 4.87816 4.88675 4.98479 5.12798 5.18319 5.23567 5.25297 5.31361 5.34206 5.41781 5.65361 5.68294 5.70568 5.92260 6.34738 6.52152 6.55798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.089 4.089 3 Si 0.760 3.240 4 C -0.042 4.042 5 C -0.132 4.132 6 C -0.052 4.052 7 C -0.140 4.140 8 C 0.512 3.488 9 O -0.533 6.533 10 O -0.338 6.338 11 C 0.080 3.920 12 C 0.242 3.758 13 H 0.109 0.891 14 O -0.382 6.382 15 C 0.051 3.949 16 C 0.076 3.924 17 H 0.121 0.879 18 N -0.569 5.569 19 C 0.576 3.424 20 O -0.481 6.481 21 C -0.159 4.159 22 C -0.159 4.159 23 C -0.045 4.045 24 C -0.084 4.084 25 C -0.084 4.084 26 C -0.043 4.043 27 C 0.576 3.424 28 O -0.487 6.487 29 C 0.050 3.950 30 O -0.384 6.384 31 C -0.059 4.059 32 C -0.108 4.108 33 H 0.398 0.602 34 H 0.106 0.894 35 H -0.283 1.283 36 H -0.297 1.297 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.154 0.846 44 H 0.176 0.824 45 H 0.176 0.824 46 H 0.156 0.844 47 H 0.114 0.886 48 H 0.075 0.925 49 H 0.141 0.859 50 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.836 6.083 3.214 9.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.198 4.198 3 Si 0.665 3.335 4 C -0.043 4.043 5 C -0.150 4.150 6 C -0.070 4.070 7 C -0.141 4.141 8 C 0.359 3.641 9 O -0.424 6.424 10 O -0.254 6.254 11 C 0.007 3.993 12 C 0.147 3.853 13 H 0.126 0.874 14 O -0.301 6.301 15 C -0.026 4.026 16 C -0.026 4.026 17 H 0.139 0.861 18 N -0.314 5.314 19 C 0.367 3.633 20 O -0.354 6.354 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.063 4.063 24 C -0.102 4.102 25 C -0.102 4.102 26 C -0.061 4.061 27 C 0.368 3.632 28 O -0.360 6.360 29 C -0.027 4.027 30 O -0.304 6.304 31 C -0.077 4.077 32 C -0.126 4.126 33 H 0.249 0.751 34 H 0.124 0.876 35 H -0.210 1.210 36 H -0.225 1.225 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.171 0.829 44 H 0.193 0.807 45 H 0.193 0.807 46 H 0.173 0.827 47 H 0.132 0.868 48 H 0.093 0.907 49 H 0.158 0.842 50 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.241 5.861 3.224 9.149 hybrid contribution -1.275 -0.480 -0.252 1.386 sum 4.966 5.381 2.972 7.902 Atomic orbital electron populations 1.86543 1.18061 1.80777 1.51281 1.25056 0.84436 1.11897 0.98377 0.94095 0.90431 0.72274 0.76690 1.19848 0.95273 0.94156 0.94982 1.21206 0.99437 1.00763 0.93546 1.21542 0.95739 0.92471 0.97241 1.19205 1.05742 0.95200 0.93950 1.21429 0.74601 0.85000 0.83070 1.90832 1.56132 1.17138 1.78314 1.86627 1.65592 1.42658 1.30476 1.23320 0.99690 0.92891 0.83429 1.23842 0.81074 0.87100 0.93253 0.87393 1.88233 1.40180 1.60296 1.41432 1.23030 0.93443 0.88978 0.97130 1.22586 0.93590 0.92930 0.93472 0.86084 1.46461 1.51941 1.11206 1.21748 1.18731 0.76662 0.88186 0.79676 1.90796 1.56343 1.21701 1.66519 1.20454 1.04345 0.92784 0.98720 1.20437 1.03708 0.96728 0.95388 1.21160 0.93281 0.94709 0.97162 1.21954 0.94923 1.01478 0.91813 1.21965 0.96673 0.90775 1.00797 1.21163 0.92417 0.99587 0.92977 1.18764 0.77806 0.80783 0.85892 1.90828 1.49877 1.62528 1.32731 1.23031 0.94275 0.93061 0.92304 1.88232 1.37669 1.38353 1.66128 1.21408 0.93509 1.00807 0.91967 1.21149 0.99479 0.94095 0.97830 0.75114 0.87576 1.20966 1.22490 0.83171 0.83117 0.87670 0.87407 0.86539 0.90691 0.82869 0.80700 0.80664 0.82677 0.86824 0.90683 0.84158 0.83344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.78 12.81 -148.98 -1.91 -2.68 16 2 C -0.09 0.13 2.79 71.24 0.20 0.33 16 3 Si 0.76 -1.76 29.83 68.60 2.05 0.29 16 4 C -0.04 -0.10 5.39 -19.80 -0.11 -0.20 16 5 C -0.13 -0.27 8.65 22.23 0.19 -0.08 16 6 C -0.05 -0.22 9.62 22.53 0.22 0.00 16 7 C -0.14 -1.01 5.87 -20.10 -0.12 -1.13 16 8 C 0.51 5.17 7.90 70.33 0.56 5.72 16 9 O -0.53 -7.55 16.14 19.91 0.32 -7.23 16 10 O -0.34 -2.84 9.27 -49.86 -0.46 -3.30 16 11 C 0.08 0.34 5.56 71.98 0.40 0.74 16 12 C 0.24 0.83 3.59 71.98 0.26 1.09 16 13 H 0.11 -0.10 8.14 -2.38 -0.02 -0.12 16 14 O -0.38 -2.02 10.44 -122.14 -1.27 -3.29 16 15 C 0.05 0.13 6.32 72.07 0.46 0.59 16 16 C 0.08 0.25 3.08 45.17 0.14 0.38 16 17 H 0.12 0.59 7.59 -2.39 -0.02 0.58 16 18 N -0.57 -1.77 2.53 -739.56 -1.87 -3.64 16 19 C 0.58 1.73 7.35 86.82 0.64 2.37 16 20 O -0.48 -3.03 15.16 -3.56 -0.05 -3.09 16 21 C -0.16 0.11 6.40 -20.00 -0.13 -0.02 16 22 C -0.16 0.02 6.41 -20.00 -0.13 -0.11 16 23 C -0.04 0.24 10.09 22.44 0.23 0.47 16 24 C -0.08 0.88 10.03 22.36 0.22 1.10 16 25 C -0.08 0.90 10.04 22.36 0.22 1.12 16 26 C -0.04 0.26 10.09 22.44 0.23 0.49 16 27 C 0.58 2.59 8.02 86.82 0.70 3.29 16 28 O -0.49 -4.80 17.44 -3.57 -0.06 -4.86 16 29 C 0.05 0.15 6.32 72.07 0.46 0.61 16 30 O -0.38 -2.24 10.44 -122.14 -1.27 -3.52 16 31 C -0.06 -0.33 9.60 22.54 0.22 -0.11 16 32 C -0.11 -0.33 9.66 22.23 0.21 -0.12 16 33 H 0.40 -2.67 8.74 -74.06 -0.65 -3.32 16 34 H 0.11 -0.66 7.96 -2.39 -0.02 -0.67 16 35 H -0.28 -0.45 7.11 99.48 0.71 0.26 16 36 H -0.30 -1.53 7.05 99.48 0.70 -0.83 16 37 H 0.15 -0.27 4.85 -2.91 -0.01 -0.28 16 38 H 0.15 0.36 7.61 -2.91 -0.02 0.34 16 39 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.11 0.24 8.14 -2.38 -0.02 0.22 16 41 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.07 0.19 6.67 -2.39 -0.02 0.18 16 43 H 0.15 -1.18 8.06 -2.91 -0.02 -1.20 16 44 H 0.18 -2.87 8.06 -2.91 -0.02 -2.89 16 45 H 0.18 -2.92 8.06 -2.91 -0.02 -2.94 16 46 H 0.16 -1.35 8.06 -2.91 -0.02 -1.37 16 47 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.08 0.22 6.68 -2.39 -0.02 0.21 16 49 H 0.14 0.71 7.65 -2.92 -0.02 0.69 16 50 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: 0.00 -26.47 429.74 0.94 -25.54 By element: Atomic # 1 Polarization: -11.15 SS G_CDS: 0.42 Total: -10.73 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 5.06 Total: 16.52 kcal Atomic # 7 Polarization: -1.77 SS G_CDS: -1.87 Total: -3.64 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -4.72 Total: -27.97 kcal Atomic # 14 Polarization: -1.76 SS G_CDS: 2.05 Total: 0.29 kcal Total: -26.47 0.94 -25.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_13594054.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.548 kcal (2) G-P(sol) polarization free energy of solvation -26.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds