Wall clock time and date at job start Sat Mar 6 2021 08:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 O 1.42895 * 109.47503 * 239.99913 * 2 1 3 6 6 C 1.42899 * 113.99963 * 59.99687 * 5 2 1 7 7 H 1.08997 * 112.84984 * 18.80718 * 6 5 2 8 8 C 1.53789 * 113.61207 * 150.00347 * 6 5 2 9 9 C 1.53785 * 87.07963 * 139.98392 * 8 6 5 10 10 H 1.08991 * 113.61397 * 89.19955 * 9 8 6 11 11 C 1.53006 * 113.61113 * 220.02147 * 9 8 6 12 12 O 1.45203 * 109.46598 * 184.99832 * 11 9 8 13 13 C 1.34714 * 116.99486 * 179.97438 * 12 11 9 14 14 O 1.21473 * 119.99961 * 359.97438 * 13 12 11 15 15 C 1.47730 * 119.99882 * 180.02562 * 13 12 11 16 16 C 1.39630 * 120.14694 * 359.71823 * 15 13 12 17 17 C 1.37943 * 119.84421 * 179.72753 * 16 15 13 18 18 C 1.38365 * 120.15038 * 0.57782 * 17 16 15 19 19 C 1.50703 * 119.84890 * 179.71932 * 18 17 16 20 20 O 1.42911 * 109.46915 * 119.97754 * 19 18 17 21 21 Si 1.86296 * 109.47000 * 359.97438 * 19 18 17 22 22 C 1.38365 * 120.30308 * 359.69935 * 18 17 16 23 23 C 1.37945 * 120.14969 * 0.02562 * 22 18 17 24 24 C 1.53783 * 87.08079 * 334.56393 * 9 8 6 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 1.08997 * 113.61447 * 254.53073 * 8 6 5 35 35 H 1.08992 * 113.61339 * 25.35090 * 8 6 5 36 36 H 1.08998 * 109.46931 * 304.99551 * 11 9 8 37 37 H 1.08995 * 109.47370 * 65.00011 * 11 9 8 38 38 H 1.07996 * 120.07699 * 0.02976 * 16 15 13 39 39 H 1.08007 * 119.92260 * 180.27890 * 17 16 15 40 40 H 1.08996 * 109.47256 * 239.97854 * 19 18 17 41 41 H 0.96699 * 113.99714 * 180.02562 * 20 19 18 42 42 H 1.48503 * 109.99964 * 298.67608 * 21 19 18 43 43 H 1.48504 * 110.00430 * 59.99888 * 21 19 18 44 44 H 1.08002 * 119.92590 * 180.02562 * 22 18 17 45 45 H 1.08001 * 120.07387 * 180.02562 * 23 22 18 46 46 H 1.08997 * 113.61910 * 270.88880 * 24 9 8 47 47 H 1.09001 * 113.61039 * 139.98184 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 8 2.0064 -0.6736 -1.1667 6 6 1.5847 -0.0774 -2.3950 7 1 1.2523 0.9535 -2.2729 8 6 2.5838 -0.2700 -3.5481 9 6 1.3668 -0.5005 -4.4596 10 1 0.9747 0.4142 -4.9039 11 6 1.5714 -1.6185 -5.4840 12 8 0.4218 -1.6803 -6.3688 13 6 0.4440 -2.6181 -7.3356 14 8 1.3977 -3.3636 -7.4369 15 6 -0.6911 -2.7393 -8.2734 16 6 -1.7911 -1.8873 -8.1567 17 6 -2.8451 -2.0022 -9.0392 18 6 -2.8192 -2.9669 -10.0307 19 6 -3.9772 -3.0906 -10.9872 20 8 -3.5155 -2.8822 -12.3236 21 14 -5.2670 -1.8129 -10.5694 22 6 -1.7349 -3.8183 -10.1484 23 6 -0.6717 -3.7106 -9.2761 24 6 0.6078 -0.9505 -3.2001 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7207 1.2495 33 1 1.6766 -0.2073 2.1393 34 1 3.1478 0.6302 -3.7922 35 1 3.2182 -1.1489 -3.4339 36 1 2.4691 -1.4162 -6.0681 37 1 1.6822 -2.5707 -4.9653 38 1 -1.8145 -1.1368 -7.3805 39 1 -3.6946 -1.3408 -8.9529 40 1 -4.4123 -4.0865 -10.9042 41 1 -4.2094 -2.9470 -12.9940 42 1 -5.7781 -2.0383 -9.1934 43 1 -4.6864 -0.4504 -10.6787 44 1 -1.7209 -4.5688 -10.9248 45 1 0.1743 -4.3756 -9.3693 46 1 0.7010 -2.0162 -2.9915 47 1 -0.4235 -0.5995 -3.1632 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_14598394.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:22:06 Heat of formation + Delta-G solvation = -108.053533 kcal Electronic energy + Delta-G solvation = -26527.900885 eV Core-core repulsion = 22643.546810 eV Total energy + Delta-G solvation = -3884.354076 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.171 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91323 -40.94607 -40.30754 -38.62107 -37.60580 -37.37161 -33.96089 -33.30475 -32.36629 -29.94597 -28.38965 -28.37087 -27.52645 -26.68470 -24.39163 -23.97281 -23.34362 -21.88492 -20.90704 -20.67852 -19.22705 -18.52046 -18.35845 -17.75587 -17.61563 -16.94227 -16.67838 -16.60271 -16.10408 -15.94253 -15.74818 -15.25929 -14.99017 -14.76286 -14.59175 -14.43891 -14.17367 -14.01379 -13.78808 -13.63472 -13.51919 -13.35321 -13.22212 -13.02357 -12.82578 -12.68666 -12.60434 -12.47486 -12.29587 -12.26061 -12.07310 -11.95115 -11.86619 -11.61394 -11.38899 -11.22564 -10.49893 -10.40088 -10.28679 -10.05880 -4.92924 -0.65071 0.08825 1.20055 1.30152 1.35986 1.66238 1.96711 2.45089 2.68359 3.21450 3.31300 3.41224 3.48855 3.60471 3.66858 3.71505 3.78395 3.84870 3.88786 3.94760 4.03930 4.06385 4.08169 4.13344 4.20497 4.30412 4.37167 4.44156 4.56912 4.60105 4.64471 4.71873 4.72678 4.74206 4.76022 4.80999 4.87887 4.89845 4.91359 4.95948 5.02372 5.08330 5.13288 5.16385 5.19659 5.28463 5.30817 5.35847 5.54817 6.38677 6.46163 6.88337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 C -0.177 4.177 4 C -0.140 4.140 5 O -0.383 6.383 6 C 0.062 3.938 7 H 0.105 0.895 8 C -0.125 4.125 9 C -0.102 4.102 10 H 0.118 0.882 11 C 0.078 3.922 12 O -0.348 6.348 13 C 0.511 3.489 14 O -0.534 6.534 15 C -0.140 4.140 16 C -0.052 4.052 17 C -0.150 4.150 18 C -0.049 4.049 19 C -0.086 4.086 20 O -0.562 6.562 21 Si 0.774 3.226 22 C -0.104 4.104 23 C -0.057 4.057 24 C -0.149 4.149 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.156 0.844 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.406 0.594 42 H -0.284 1.284 43 H -0.295 1.295 44 H 0.155 0.845 45 H 0.143 0.857 46 H 0.078 0.922 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 2.422 -0.949 6.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.234 4.234 4 C -0.197 4.197 5 O -0.302 6.302 6 C 0.004 3.996 7 H 0.123 0.877 8 C -0.162 4.162 9 C -0.120 4.120 10 H 0.136 0.864 11 C 0.004 3.996 12 O -0.264 6.264 13 C 0.358 3.642 14 O -0.425 6.425 15 C -0.142 4.142 16 C -0.070 4.070 17 C -0.168 4.168 18 C -0.049 4.049 19 C -0.195 4.195 20 O -0.373 6.373 21 Si 0.679 3.321 22 C -0.122 4.122 23 C -0.076 4.076 24 C -0.187 4.187 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.174 0.826 39 H 0.150 0.850 40 H 0.122 0.878 41 H 0.258 0.742 42 H -0.211 1.211 43 H -0.222 1.222 44 H 0.172 0.828 45 H 0.161 0.839 46 H 0.096 0.904 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.571 2.778 -0.091 6.226 hybrid contribution 0.735 -0.319 0.297 0.854 sum -4.836 2.459 0.207 5.430 Atomic orbital electron populations 1.22444 0.94928 1.02549 1.03176 1.21692 0.93727 0.92566 0.86150 1.22448 1.01943 0.95688 1.03308 1.21799 1.01672 1.00714 0.95527 1.88019 1.74243 1.54338 1.13637 1.23657 0.95579 0.97426 0.82940 0.87695 1.23224 0.96259 1.03626 0.93140 1.22339 0.98866 0.98365 0.92431 0.86420 1.23247 0.86105 1.00028 0.90198 1.86517 1.46119 1.52737 1.41063 1.21367 0.86046 0.77376 0.79438 1.90836 1.36011 1.43525 1.72129 1.19212 0.94490 1.01956 0.98492 1.21522 0.90907 0.96797 0.97730 1.21062 0.99480 0.99119 0.97104 1.20123 0.96055 0.94067 0.94648 1.24927 0.99542 1.10238 0.84841 1.86437 1.40796 1.95087 1.14936 0.94192 0.81199 0.74717 0.81956 1.21190 0.92076 0.99984 0.98926 1.21498 0.98887 0.95332 0.91843 1.23609 0.99532 1.00871 0.94640 0.92564 0.91931 0.90518 0.90372 0.92199 0.91687 0.92523 0.92315 0.89665 0.89039 0.89599 0.90681 0.91370 0.82626 0.85007 0.87804 0.74179 1.21103 1.22222 0.82754 0.83915 0.90372 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.16 8.38 71.98 0.60 0.77 16 2 C 0.10 0.08 1.11 -10.79 -0.01 0.07 16 3 C -0.18 0.28 8.38 71.98 0.60 0.89 16 4 C -0.14 -0.04 8.84 71.98 0.64 0.59 16 5 O -0.38 -1.74 10.00 -148.98 -1.49 -3.23 16 6 C 0.06 0.02 2.82 31.12 0.09 0.11 16 7 H 0.11 -0.25 5.54 -2.39 -0.01 -0.26 16 8 C -0.12 0.06 7.47 31.12 0.23 0.30 16 9 C -0.10 0.05 4.02 -10.26 -0.04 0.00 16 10 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 11 C 0.08 0.30 5.31 71.98 0.38 0.68 16 12 O -0.35 -2.24 9.47 -56.24 -0.53 -2.77 16 13 C 0.51 4.99 7.90 70.33 0.56 5.55 16 14 O -0.53 -8.00 16.14 19.92 0.32 -7.68 16 15 C -0.14 -0.99 5.87 -20.10 -0.12 -1.10 16 16 C -0.05 -0.21 9.62 22.54 0.22 0.01 16 17 C -0.15 -0.55 8.65 22.23 0.19 -0.36 16 18 C -0.05 -0.14 5.43 -19.80 -0.11 -0.25 16 19 C -0.09 0.26 2.81 71.24 0.20 0.46 16 20 O -0.56 1.45 12.74 -148.98 -1.90 -0.45 16 21 Si 0.77 -3.33 29.77 68.60 2.04 -1.28 16 22 C -0.10 -0.33 9.59 22.23 0.21 -0.11 16 23 C -0.06 -0.32 9.60 22.53 0.22 -0.11 16 24 C -0.15 -0.09 7.46 31.12 0.23 0.14 16 25 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.06 -0.11 7.02 -2.39 -0.02 -0.13 16 27 H 0.08 -0.23 8.14 -2.38 -0.02 -0.25 16 28 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.06 -0.18 6.24 -2.39 -0.01 -0.20 16 31 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 34 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.09 0.13 8.10 -2.39 -0.02 0.11 16 36 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 37 H 0.07 0.36 7.84 -2.39 -0.02 0.34 16 38 H 0.16 0.08 7.61 -2.91 -0.02 0.06 16 39 H 0.13 0.24 4.86 -2.91 -0.01 0.23 16 40 H 0.10 -0.78 7.96 -2.39 -0.02 -0.79 16 41 H 0.41 -5.31 8.74 -74.06 -0.65 -5.96 16 42 H -0.28 -0.21 7.11 99.48 0.71 0.49 16 43 H -0.29 -0.97 7.11 99.48 0.71 -0.26 16 44 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 45 H 0.14 0.71 7.65 -2.91 -0.02 0.69 16 46 H 0.08 0.27 7.90 -2.39 -0.02 0.25 16 47 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -17.29 382.69 2.89 -14.41 By element: Atomic # 1 Polarization: -6.98 SS G_CDS: 0.35 Total: -6.63 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 4.09 Total: 7.63 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -3.60 Total: -14.13 kcal Atomic # 14 Polarization: -3.33 SS G_CDS: 2.04 Total: -1.28 kcal Total: -17.29 2.89 -14.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_14598394.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.646 kcal (2) G-P(sol) polarization free energy of solvation -17.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds