Wall clock time and date at job start Sat Mar 6 2021 08:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47281 * 2 1 4 4 C 1.53003 * 109.47030 * 239.99698 * 2 1 3 5 5 O 1.45204 * 109.46961 * 120.00086 * 2 1 3 6 6 C 1.34636 * 117.00003 * 60.00081 * 5 2 1 7 7 O 1.21505 * 120.00212 * 359.97438 * 6 5 2 8 8 N 1.34776 * 119.99540 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99708 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.85249 * 336.19485 * 9 8 6 11 11 C 1.53782 * 113.61265 * 107.50374 * 9 8 6 12 12 C 1.53783 * 87.08237 * 89.11695 * 11 9 8 13 13 H 1.09000 * 113.68742 * 270.87473 * 12 11 9 14 14 C 1.52994 * 113.61431 * 139.97997 * 12 11 9 15 15 O 1.45205 * 109.47267 * 87.50203 * 14 12 11 16 16 C 1.34706 * 117.00021 * 179.97438 * 15 14 12 17 17 O 1.21469 * 120.00469 * 359.97438 * 16 15 14 18 18 C 1.47727 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.39633 * 120.15107 * 180.02562 * 18 16 15 20 20 C 1.37944 * 119.84367 * 179.97438 * 19 18 16 21 21 C 1.38361 * 120.15460 * 359.97438 * 20 19 18 22 22 C 1.50703 * 119.84828 * 179.97438 * 21 20 19 23 23 O 1.42896 * 109.47055 * 300.00201 * 22 21 20 24 24 Si 1.86304 * 109.46911 * 180.02562 * 22 21 20 25 25 C 1.38369 * 120.30411 * 0.25773 * 21 20 19 26 26 C 1.37943 * 120.14539 * 359.48518 * 25 21 20 27 27 C 1.53779 * 87.07806 * 25.43401 * 12 11 9 28 28 H 1.09000 * 109.47808 * 300.00063 * 1 2 3 29 29 H 1.09005 * 109.47448 * 60.00335 * 1 2 3 30 30 H 1.09000 * 109.47491 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.46895 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46606 * 300.00181 * 3 2 1 33 33 H 1.08996 * 109.47165 * 59.99540 * 3 2 1 34 34 H 1.09003 * 109.47158 * 300.00052 * 4 2 1 35 35 H 1.08996 * 109.47253 * 60.00300 * 4 2 1 36 36 H 1.09000 * 109.46750 * 179.97438 * 4 2 1 37 37 H 0.96993 * 120.00356 * 0.02562 * 8 6 5 38 38 H 1.08997 * 113.61600 * 334.56380 * 11 9 8 39 39 H 1.09004 * 113.61159 * 203.66600 * 11 9 8 40 40 H 1.09001 * 109.47518 * 327.50003 * 14 12 11 41 41 H 1.09003 * 109.47496 * 207.50182 * 14 12 11 42 42 H 1.08001 * 120.07549 * 359.95238 * 19 18 16 43 43 H 1.08007 * 119.92053 * 180.02562 * 20 19 18 44 44 H 1.09002 * 109.47152 * 60.00009 * 22 21 20 45 45 H 0.96708 * 114.00101 * 299.99358 * 23 22 21 46 46 H 1.48501 * 109.99652 * 179.97438 * 24 22 21 47 47 H 1.48494 * 110.00064 * 301.31786 * 24 22 21 48 48 H 1.07995 * 119.92632 * 179.74643 * 25 21 20 49 49 H 1.08004 * 120.07352 * 180.23736 * 26 25 21 50 50 H 1.08999 * 113.61868 * 89.12373 * 27 12 11 51 51 H 1.09007 * 113.61029 * 220.01947 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5095 0.5041 8 7 2.0671 -2.6654 2.4172 9 6 1.6731 -4.0665 2.5837 10 1 0.7587 -4.3159 2.0453 11 6 2.8211 -5.0617 2.3461 12 6 3.1483 -4.9205 3.8420 13 1 3.8449 -4.1119 4.0635 14 6 3.5374 -6.2400 4.5115 15 8 4.9657 -6.4556 4.3626 16 6 5.4736 -7.5811 4.9009 17 8 4.7437 -8.3609 5.4793 18 6 6.9187 -7.8666 4.7888 19 6 7.4485 -9.0325 5.3451 20 6 8.7988 -9.2930 5.2363 21 6 9.6275 -8.4024 4.5772 22 6 11.1017 -8.6935 4.4628 23 8 11.6701 -8.7945 5.7700 24 14 11.9363 -7.3148 3.5282 25 6 9.1099 -7.2427 4.0277 26 6 7.7607 -6.9724 4.1246 27 6 1.6735 -4.5368 4.0478 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1299 1.4424 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 -1.7490 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1299 -0.7209 -1.2494 37 1 2.6261 -2.2363 3.0837 38 1 3.6026 -4.6783 1.6900 39 1 2.4831 -6.0592 2.0653 40 1 2.9952 -7.0601 4.0408 41 1 3.2849 -6.1983 5.5710 42 1 6.8027 -9.7286 5.8598 43 1 9.2099 -10.1947 5.6658 44 1 11.2462 -9.6335 3.9302 45 1 11.5782 -7.9922 6.3020 46 1 13.3908 -7.5897 3.4092 47 1 11.3326 -7.1780 2.1785 48 1 9.7630 -6.5498 3.5182 49 1 7.3574 -6.0688 3.6920 50 1 1.0217 -5.3907 4.2324 51 1 1.5285 -3.7294 4.7658 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_15734084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:50:27 Heat of formation + Delta-G solvation = -141.292475 kcal Electronic energy + Delta-G solvation = -31986.426675 eV Core-core repulsion = 27432.759388 eV Total energy + Delta-G solvation = -4553.667287 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00649 -41.72848 -40.57533 -40.09457 -38.06399 -37.62348 -37.34631 -35.37043 -34.11981 -33.05956 -32.19635 -29.80131 -28.37704 -28.30699 -27.52958 -26.75421 -24.85405 -23.88211 -23.79328 -23.04341 -21.80660 -21.17067 -20.33534 -19.34630 -19.11198 -18.58825 -17.94354 -17.59968 -17.55245 -17.19834 -16.72999 -16.61219 -16.20544 -16.07498 -15.77434 -15.68834 -15.44206 -15.27587 -15.16900 -14.75683 -14.67664 -14.47557 -14.24796 -13.85835 -13.67606 -13.49982 -13.45875 -13.36277 -13.26757 -13.05611 -12.92659 -12.87415 -12.53488 -12.45579 -12.34099 -12.28354 -12.07125 -11.92683 -11.87906 -11.79243 -11.50185 -11.40393 -11.20690 -11.13251 -10.53826 -10.20553 -10.12624 -10.04270 -4.99045 -0.51674 0.25717 1.11469 1.27661 1.36335 1.48963 1.64865 1.71498 1.98299 2.60994 3.09624 3.31759 3.38280 3.46650 3.55096 3.60112 3.73295 3.74491 3.77676 3.79854 3.87496 3.93152 3.93694 4.19706 4.22948 4.33832 4.35492 4.41563 4.44433 4.47192 4.60385 4.60521 4.66961 4.72331 4.73842 4.75876 4.82048 4.87164 4.88286 4.90660 4.94069 5.01669 5.04471 5.08389 5.14985 5.20712 5.26263 5.29094 5.31232 5.34358 5.47029 5.60561 5.70404 6.37113 6.58578 6.74799 7.32200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.368 6.368 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.682 5.682 9 C 0.132 3.868 10 H 0.095 0.905 11 C -0.146 4.146 12 C -0.101 4.101 13 H 0.115 0.885 14 C 0.073 3.927 15 O -0.347 6.347 16 C 0.510 3.490 17 O -0.538 6.538 18 C -0.140 4.140 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.080 4.080 23 O -0.553 6.553 24 Si 0.780 3.220 25 C -0.129 4.129 26 C -0.050 4.050 27 C -0.121 4.121 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.418 0.582 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.141 0.859 44 H 0.113 0.887 45 H 0.397 0.603 46 H -0.301 1.301 47 H -0.281 1.281 48 H 0.158 0.842 49 H 0.160 0.840 50 H 0.113 0.887 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.241 6.076 1.423 6.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.400 3.600 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.027 3.973 10 H 0.113 0.887 11 C -0.185 4.185 12 C -0.119 4.119 13 H 0.133 0.867 14 C 0.000 4.000 15 O -0.263 6.263 16 C 0.357 3.643 17 O -0.429 6.429 18 C -0.141 4.141 19 C -0.081 4.081 20 C -0.128 4.128 21 C -0.082 4.082 22 C -0.190 4.190 23 O -0.361 6.361 24 Si 0.686 3.314 25 C -0.146 4.146 26 C -0.068 4.068 27 C -0.159 4.159 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.255 0.745 38 H 0.087 0.913 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.130 0.870 45 H 0.247 0.753 46 H -0.230 1.230 47 H -0.208 1.208 48 H 0.175 0.825 49 H 0.178 0.822 50 H 0.131 0.869 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.227 5.333 0.221 5.784 hybrid contribution -0.383 -0.950 0.226 1.049 sum 1.844 4.383 0.448 4.776 Atomic orbital electron populations 1.22478 0.94065 1.03690 1.03540 1.22352 0.94440 0.92589 0.81468 1.21892 1.02501 0.90819 1.04261 1.22475 1.01670 1.02222 0.97381 1.86310 1.71496 1.23198 1.47275 1.18315 0.78543 0.80734 0.82447 1.90909 1.42240 1.71065 1.44209 1.44339 1.54987 1.11743 1.23110 1.21802 0.98576 0.78225 0.98673 0.88686 1.23572 0.98372 1.00134 0.96403 1.22667 0.97798 0.96063 0.95360 0.86715 1.23323 0.76175 0.98494 1.02055 1.86521 1.28186 1.40331 1.71295 1.21436 0.89361 0.78852 0.74674 1.90840 1.61776 1.48635 1.41695 1.19242 0.89363 0.98879 1.06653 1.21386 0.95835 0.95005 0.95849 1.21087 0.92008 1.00430 0.99237 1.20811 0.96788 0.94422 0.96145 1.25316 0.91353 1.10697 0.91608 1.86495 1.79967 1.43855 1.25807 0.93671 0.75400 0.83410 0.78965 1.21263 0.95559 0.97005 1.00739 1.21630 0.92847 0.98459 0.93858 1.23336 0.94885 1.02803 0.94898 0.91866 0.89516 0.91808 0.91107 0.88365 0.91121 0.91836 0.89520 0.91884 0.74481 0.91262 0.88429 0.90944 0.90463 0.84856 0.84093 0.86970 0.75257 1.22953 1.20753 0.82452 0.82242 0.86862 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 2 C 0.13 0.29 1.13 -10.79 -0.01 0.28 16 3 C -0.14 0.39 8.85 71.98 0.64 1.03 16 4 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 5 O -0.37 -1.65 9.94 -55.45 -0.55 -2.21 16 6 C 0.65 3.69 8.06 129.79 1.05 4.73 16 7 O -0.59 -6.77 11.48 19.83 0.23 -6.54 16 8 N -0.68 0.71 5.27 -567.62 -2.99 -2.28 16 9 C 0.13 -0.33 4.32 45.52 0.20 -0.13 16 10 H 0.10 0.12 7.46 -2.39 -0.02 0.11 16 11 C -0.15 0.47 7.43 31.12 0.23 0.70 16 12 C -0.10 0.59 3.90 -10.27 -0.04 0.55 16 13 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 14 C 0.07 -0.13 5.31 71.98 0.38 0.26 16 15 O -0.35 -0.55 9.47 -56.16 -0.53 -1.09 16 16 C 0.51 2.82 7.90 70.33 0.56 3.37 16 17 O -0.54 -6.15 16.14 19.94 0.32 -5.83 16 18 C -0.14 -0.33 5.87 -20.10 -0.12 -0.45 16 19 C -0.06 -0.14 9.60 22.54 0.22 0.07 16 20 C -0.11 0.02 9.59 22.23 0.21 0.23 16 21 C -0.08 0.20 5.40 -19.80 -0.11 0.10 16 22 C -0.08 0.26 2.82 71.24 0.20 0.46 16 23 O -0.55 1.26 12.76 -148.98 -1.90 -0.65 16 24 Si 0.78 -3.88 29.77 68.60 2.04 -1.84 16 25 C -0.13 0.57 8.65 22.23 0.19 0.76 16 26 C -0.05 0.12 9.62 22.54 0.22 0.34 16 27 C -0.12 0.89 7.39 31.12 0.23 1.12 16 28 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 30 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 31 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 32 H 0.10 -0.58 8.14 -2.38 -0.02 -0.60 16 33 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 35 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.42 -2.42 8.81 -92.71 -0.82 -3.23 16 38 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.10 -0.32 7.90 -2.38 -0.02 -0.34 16 40 H 0.07 -0.06 7.84 -2.39 -0.02 -0.08 16 41 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.13 0.41 7.65 -2.91 -0.02 0.39 16 43 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 44 H 0.11 -0.24 7.96 -2.39 -0.02 -0.26 16 45 H 0.40 -4.14 8.70 -74.05 -0.64 -4.79 16 46 H -0.30 -0.99 7.11 99.48 0.71 -0.28 16 47 H -0.28 0.20 7.11 99.48 0.71 0.91 16 48 H 0.16 -1.46 4.86 -2.91 -0.01 -1.48 16 49 H 0.16 -0.98 7.61 -2.91 -0.02 -1.00 16 50 H 0.11 -0.98 8.10 -2.39 -0.02 -1.00 16 51 H 0.10 -0.89 8.14 -2.38 -0.02 -0.91 16 Total: 0.00 -21.50 417.88 1.40 -20.11 By element: Atomic # 1 Polarization: -12.86 SS G_CDS: -0.46 Total: -13.33 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 5.25 Total: 13.65 kcal Atomic # 7 Polarization: 0.71 SS G_CDS: -2.99 Total: -2.28 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -2.44 Total: -16.31 kcal Atomic # 14 Polarization: -3.88 SS G_CDS: 2.04 Total: -1.84 kcal Total: -21.50 1.40 -20.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_15734084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.187 kcal (2) G-P(sol) polarization free energy of solvation -21.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds