Wall clock time and date at job start Sat Mar 6 2021 08:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.53002 * 109.46943 * 240.00160 * 2 1 3 5 5 O 1.45196 * 109.47120 * 119.99853 * 2 1 3 6 6 C 1.34644 * 116.99750 * 60.00078 * 5 2 1 7 7 O 1.21507 * 119.99930 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99827 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00258 * 179.97438 * 8 6 5 10 10 H 1.09002 * 112.84698 * 23.81010 * 9 8 6 11 11 C 1.53781 * 113.61479 * 155.00061 * 9 8 6 12 12 C 1.53785 * 87.08021 * 139.98553 * 11 9 8 13 13 H 1.09004 * 113.61353 * 89.11257 * 12 11 9 14 14 C 1.52997 * 113.61401 * 219.93711 * 12 11 9 15 15 O 1.45205 * 109.47152 * 184.99933 * 14 12 11 16 16 C 1.34711 * 117.00116 * 180.02562 * 15 14 12 17 17 O 1.21471 * 119.99791 * 359.97438 * 16 15 14 18 18 C 1.47727 * 119.99940 * 179.97438 * 16 15 14 19 19 C 1.39626 * 120.15082 * 359.72167 * 18 16 15 20 20 C 1.37940 * 119.85079 * 179.77021 * 19 18 16 21 21 C 1.38370 * 120.14665 * 0.52421 * 20 19 18 22 22 C 1.50701 * 119.85091 * 179.72212 * 21 20 19 23 23 O 1.42898 * 109.47312 * 119.98289 * 22 21 20 24 24 Si 1.86297 * 109.46840 * 359.97438 * 22 21 20 25 25 C 1.38373 * 120.30514 * 359.71012 * 21 20 19 26 26 C 1.37947 * 120.14424 * 0.03180 * 25 21 20 27 27 C 1.53779 * 113.61716 * 252.50494 * 9 8 6 28 28 H 1.09004 * 109.47306 * 299.99804 * 1 2 3 29 29 H 1.09003 * 109.47378 * 60.00136 * 1 2 3 30 30 H 1.09006 * 109.47255 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47084 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46954 * 299.99569 * 3 2 1 33 33 H 1.08998 * 109.47592 * 60.00181 * 3 2 1 34 34 H 1.09005 * 109.46853 * 299.99576 * 4 2 1 35 35 H 1.08994 * 109.47198 * 59.99893 * 4 2 1 36 36 H 1.08999 * 109.46961 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00047 * 0.02562 * 8 6 5 38 38 H 1.08997 * 113.61529 * 254.53080 * 11 9 8 39 39 H 1.08994 * 113.61503 * 25.43673 * 11 9 8 40 40 H 1.09000 * 109.47181 * 304.99668 * 14 12 11 41 41 H 1.08994 * 109.47380 * 64.99936 * 14 12 11 42 42 H 1.08010 * 120.07489 * 0.02562 * 19 18 16 43 43 H 1.07996 * 119.93085 * 180.23084 * 20 19 18 44 44 H 1.09001 * 109.47513 * 239.98784 * 22 21 20 45 45 H 0.96701 * 113.99612 * 300.00106 * 23 22 21 46 46 H 1.48506 * 109.99996 * 58.68290 * 24 22 21 47 47 H 1.48502 * 110.00099 * 180.02562 * 24 22 21 48 48 H 1.07993 * 119.92961 * 180.02562 * 25 21 20 49 49 H 1.08001 * 120.07475 * 180.02562 * 26 25 21 50 50 H 1.09000 * 113.60898 * 334.56095 * 27 9 8 51 51 H 1.08994 * 113.62073 * 105.46736 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 1 1.4209 -4.5503 1.6396 11 6 2.6474 -4.8815 3.4512 12 6 1.4101 -5.5542 4.0688 13 1 1.0837 -6.4450 3.5320 14 6 1.5235 -5.7781 5.5781 15 8 0.3661 -6.5199 6.0456 16 6 0.3109 -6.8015 7.3618 17 8 1.2055 -6.4376 8.0987 18 6 -0.8374 -7.5527 7.9090 19 6 -1.8701 -7.9674 7.0658 20 6 -2.9371 -8.6726 7.5825 21 6 -2.9907 -8.9598 8.9350 22 6 -4.1626 -9.7252 9.4934 23 8 -3.6981 -10.9354 10.0948 24 14 -5.3512 -10.1316 8.1176 25 6 -1.9731 -8.5476 9.7772 26 6 -0.8977 -7.8462 9.2727 27 6 0.6283 -4.2854 3.6894 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1299 -0.7208 -1.2495 37 1 2.6275 -2.2368 3.0828 38 1 3.2757 -5.5643 2.8792 39 1 3.2137 -4.2756 4.1584 40 1 2.4295 -6.3442 5.7943 41 1 1.5670 -4.8148 6.0861 42 1 -1.8316 -7.7401 6.0105 43 1 -3.7347 -8.9972 6.9308 44 1 -4.6692 -9.1178 10.2434 45 1 -3.2364 -11.5261 9.4841 46 1 -4.6641 -10.9326 7.0728 47 1 -6.5118 -10.8860 8.6554 48 1 -2.0209 -8.7754 10.8317 49 1 -0.1038 -7.5254 9.9310 50 1 0.6426 -3.5164 4.4618 51 1 -0.3734 -4.4869 3.3098 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_15734238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:50:31 Heat of formation + Delta-G solvation = -143.260061 kcal Electronic energy + Delta-G solvation = -31762.990644 eV Core-core repulsion = 27209.238036 eV Total energy + Delta-G solvation = -4553.752608 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.95315 -41.72622 -40.54330 -40.06080 -38.09644 -37.73431 -37.36451 -35.40640 -34.24469 -33.08688 -32.18860 -29.78060 -28.37293 -28.30981 -27.52952 -26.74964 -24.95291 -23.88435 -23.80721 -22.43926 -21.80609 -21.40552 -20.54877 -19.24537 -18.98396 -18.69913 -18.15639 -17.61201 -17.55498 -17.17999 -16.75625 -16.63783 -16.29736 -16.25592 -15.79685 -15.72892 -15.48626 -15.40331 -14.84672 -14.74569 -14.68519 -14.45491 -14.13639 -13.78679 -13.52655 -13.48672 -13.42722 -13.36742 -13.19536 -13.00788 -12.90270 -12.87455 -12.54392 -12.46108 -12.43941 -12.38214 -12.23856 -11.98435 -11.82737 -11.73367 -11.55107 -11.39994 -11.28030 -11.10802 -10.69801 -10.16027 -10.13393 -10.05059 -4.90684 -0.51206 0.26683 1.15538 1.26540 1.37725 1.50754 1.61485 1.72927 1.97934 2.60974 3.13034 3.30958 3.37697 3.40965 3.52322 3.61878 3.73358 3.73918 3.77177 3.79812 3.88124 3.90643 3.93828 4.16713 4.23622 4.24922 4.34122 4.41878 4.50460 4.51543 4.60640 4.62123 4.69915 4.70166 4.75834 4.76998 4.78803 4.85499 4.86919 4.92079 4.95327 5.01242 5.05564 5.09673 5.16521 5.21914 5.26466 5.29331 5.31748 5.34447 5.49934 5.59101 5.71260 6.39145 6.45734 6.58667 7.33221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.691 5.691 9 C 0.135 3.865 10 H 0.109 0.891 11 C -0.123 4.123 12 C -0.098 4.098 13 H 0.116 0.884 14 C 0.076 3.924 15 O -0.347 6.347 16 C 0.511 3.489 17 O -0.538 6.538 18 C -0.140 4.140 19 C -0.050 4.050 20 C -0.128 4.128 21 C -0.079 4.079 22 C -0.088 4.088 23 O -0.546 6.546 24 Si 0.768 3.232 25 C -0.109 4.109 26 C -0.063 4.063 27 C -0.145 4.145 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.132 0.868 45 H 0.388 0.612 46 H -0.278 1.278 47 H -0.305 1.305 48 H 0.142 0.858 49 H 0.134 0.866 50 H 0.090 0.910 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 1.931 -1.981 2.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.350 5.350 9 C 0.032 3.968 10 H 0.127 0.873 11 C -0.161 4.161 12 C -0.117 4.117 13 H 0.134 0.866 14 C 0.003 3.997 15 O -0.263 6.263 16 C 0.357 3.643 17 O -0.429 6.429 18 C -0.141 4.141 19 C -0.068 4.068 20 C -0.145 4.145 21 C -0.079 4.079 22 C -0.197 4.197 23 O -0.354 6.354 24 Si 0.673 3.327 25 C -0.127 4.127 26 C -0.081 4.081 27 C -0.184 4.184 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.254 0.746 38 H 0.114 0.886 39 H 0.124 0.876 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.150 0.850 45 H 0.237 0.763 46 H -0.204 1.204 47 H -0.233 1.233 48 H 0.160 0.840 49 H 0.152 0.848 50 H 0.109 0.891 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.397 1.530 -2.204 3.025 hybrid contribution 1.270 -0.646 0.723 1.598 sum -0.127 0.884 -1.481 1.729 Atomic orbital electron populations 1.22470 0.94017 1.03724 1.03471 1.22349 0.94484 0.92569 0.81555 1.21892 1.02442 0.90945 1.04220 1.22472 1.01618 1.02276 0.97324 1.86316 1.71549 1.23409 1.47258 1.18431 0.78641 0.80764 0.82498 1.90899 1.42189 1.70919 1.44445 1.44785 1.54913 1.12305 1.22970 1.22559 0.96705 0.78551 0.98995 0.87265 1.23369 0.96034 0.98428 0.98265 1.22327 0.98224 0.98900 0.92268 0.86597 1.23257 0.85981 0.95814 0.94656 1.86523 1.46865 1.68455 1.24499 1.21434 0.85593 0.76550 0.80703 1.90839 1.39953 1.51827 1.60294 1.19240 0.95194 1.04764 0.94923 1.21634 0.91041 0.93190 1.00973 1.21262 0.99051 0.99650 0.94577 1.20740 0.96422 0.96747 0.94022 1.25359 0.98947 0.87062 1.08307 1.86596 1.77309 1.31033 1.40508 0.94031 0.75793 0.87694 0.75144 1.21095 0.92984 0.97519 1.01112 1.21384 0.98149 0.95034 0.93520 1.23615 0.99172 0.97301 0.98333 0.92008 0.89490 0.91712 0.91205 0.88331 0.91230 0.91712 0.89494 0.91964 0.74609 0.88603 0.87605 0.90534 0.90755 0.82245 0.82474 0.85038 0.76276 1.20399 1.23311 0.84009 0.84822 0.89118 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.07 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.30 8.85 71.98 0.64 0.94 16 4 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 5 O -0.37 -1.92 9.94 -55.54 -0.55 -2.47 16 6 C 0.64 3.90 8.06 129.79 1.05 4.94 16 7 O -0.59 -6.69 11.48 19.82 0.23 -6.46 16 8 N -0.69 0.41 5.36 -567.61 -3.04 -2.63 16 9 C 0.14 -0.37 4.24 45.52 0.19 -0.18 16 10 H 0.11 0.05 7.46 -2.39 -0.02 0.03 16 11 C -0.12 0.90 7.39 31.12 0.23 1.13 16 12 C -0.10 0.54 4.02 -10.26 -0.04 0.50 16 13 H 0.12 -0.72 8.14 -2.38 -0.02 -0.74 16 14 C 0.08 -0.14 5.31 71.98 0.38 0.24 16 15 O -0.35 -0.57 9.47 -56.21 -0.53 -1.11 16 16 C 0.51 2.76 7.90 70.33 0.56 3.32 16 17 O -0.54 -6.00 16.14 19.93 0.32 -5.68 16 18 C -0.14 -0.32 5.87 -20.10 -0.12 -0.44 16 19 C -0.05 0.12 9.62 22.53 0.22 0.34 16 20 C -0.13 0.55 8.65 22.23 0.19 0.75 16 21 C -0.08 0.21 5.40 -19.80 -0.11 0.10 16 22 C -0.09 0.31 2.82 71.24 0.20 0.51 16 23 O -0.55 -0.04 12.76 -148.98 -1.90 -1.94 16 24 Si 0.77 -3.59 29.77 68.60 2.04 -1.55 16 25 C -0.11 0.05 9.59 22.23 0.21 0.26 16 26 C -0.06 -0.13 9.60 22.54 0.22 0.08 16 27 C -0.15 0.52 7.43 31.12 0.23 0.75 16 28 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 29 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.06 0.53 5.88 -2.38 -0.01 0.51 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.54 8.14 -2.39 -0.02 -0.55 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.42 -2.09 8.84 -92.71 -0.82 -2.91 16 38 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 39 H 0.11 -0.99 8.08 -2.39 -0.02 -1.01 16 40 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 -0.11 7.84 -2.39 -0.02 -0.13 16 42 H 0.16 -0.94 7.61 -2.91 -0.02 -0.96 16 43 H 0.16 -1.41 4.86 -2.91 -0.01 -1.43 16 44 H 0.13 -0.68 7.96 -2.39 -0.02 -0.70 16 45 H 0.39 -2.13 8.70 -74.06 -0.64 -2.77 16 46 H -0.28 0.36 7.11 99.48 0.71 1.07 16 47 H -0.30 -1.17 7.11 99.48 0.71 -0.46 16 48 H 0.14 -0.26 8.06 -2.91 -0.02 -0.28 16 49 H 0.13 0.37 7.65 -2.91 -0.02 0.35 16 50 H 0.09 -0.33 7.90 -2.39 -0.02 -0.35 16 51 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: 0.00 -20.63 418.04 1.34 -19.29 By element: Atomic # 1 Polarization: -10.72 SS G_CDS: -0.47 Total: -11.18 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.24 Total: 13.72 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -3.04 Total: -2.63 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -2.44 Total: -17.65 kcal Atomic # 14 Polarization: -3.59 SS G_CDS: 2.04 Total: -1.55 kcal Total: -20.63 1.34 -19.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_15734238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.967 kcal (2) G-P(sol) polarization free energy of solvation -20.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds