Wall clock time and date at job start Sat Mar 6 2021 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.46996 * 2 1 4 4 C 1.86299 * 109.46971 * 240.00046 * 2 1 3 5 5 C 1.86798 * 109.46871 * 120.00035 * 2 1 3 6 6 C 1.38238 * 119.99902 * 89.99871 * 5 2 1 7 7 C 1.38238 * 120.00072 * 180.02562 * 6 5 2 8 8 C 1.38241 * 119.99590 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99576 * 179.97438 * 8 7 6 10 10 O 1.45198 * 109.47036 * 89.99862 * 9 8 7 11 11 C 1.34719 * 117.00054 * 179.97438 * 10 9 8 12 12 O 1.21463 * 119.99677 * 0.02562 * 11 10 9 13 13 C 1.47730 * 119.99942 * 180.02562 * 11 10 9 14 14 C 1.39627 * 120.14697 * 359.72315 * 13 11 10 15 15 C 1.37951 * 119.83998 * 179.81393 * 14 13 11 16 16 C 1.38362 * 120.15221 * 0.44182 * 15 14 13 17 17 C 1.50699 * 119.84755 * 179.76516 * 16 15 14 18 18 O 1.42898 * 109.47305 * 245.02211 * 17 16 15 19 19 Si 1.86304 * 109.47069 * 5.02507 * 17 16 15 20 20 H 1.48499 * 109.47044 * 59.99863 * 19 17 16 21 21 H 1.48500 * 109.46930 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47165 * 299.99916 * 19 17 16 23 23 C 1.38372 * 120.30610 * 359.79151 * 16 15 14 24 24 C 1.37943 * 120.14597 * 359.97438 * 23 16 15 25 25 C 1.38233 * 120.00269 * 0.24973 * 8 7 6 26 26 C 1.38230 * 120.00102 * 270.02233 * 5 2 1 27 27 H 1.09001 * 109.47306 * 299.99797 * 1 2 3 28 28 H 1.09000 * 109.47398 * 59.99687 * 1 2 3 29 29 H 1.08997 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47456 * 300.00089 * 3 2 1 32 32 H 1.09001 * 109.46932 * 60.00528 * 3 2 1 33 33 H 1.08997 * 109.46934 * 299.99738 * 4 2 1 34 34 H 1.08991 * 109.46995 * 60.00209 * 4 2 1 35 35 H 1.09000 * 109.46605 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.99952 * 0.02562 * 6 5 2 37 37 H 1.07991 * 120.00062 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.47060 * 210.00086 * 9 8 7 39 39 H 1.09001 * 109.47380 * 330.00174 * 9 8 7 40 40 H 1.07994 * 120.07953 * 0.02669 * 14 13 11 41 41 H 1.08007 * 119.91794 * 180.19000 * 15 14 13 42 42 H 1.09004 * 109.46963 * 125.02583 * 17 16 15 43 43 H 0.96706 * 113.99638 * 60.00348 * 18 17 16 44 44 H 1.07989 * 119.92666 * 179.97438 * 23 16 15 45 45 H 1.07998 * 120.07668 * 179.97438 * 24 23 16 46 46 H 1.08003 * 119.99927 * 179.72604 * 25 8 7 47 47 H 1.08000 * 120.00286 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7159 -2.2432 1.4910 7 6 3.1762 -2.8950 2.6198 8 6 3.4055 -2.1842 3.7831 9 6 3.9067 -2.8949 5.0139 10 8 5.3587 -2.8950 5.0152 11 6 5.9693 -3.4949 6.0554 12 8 5.3069 -4.0043 6.9369 13 6 7.4445 -3.5332 6.1239 14 6 8.2089 -2.9536 5.1093 15 6 9.5861 -2.9896 5.1817 16 6 10.2099 -3.6062 6.2517 17 6 11.7148 -3.6461 6.3211 18 8 12.1603 -5.0005 6.2255 19 14 12.4279 -2.6569 4.9126 20 1 11.9650 -1.2494 5.0120 21 1 13.9108 -2.6958 4.9814 22 1 11.9764 -3.2365 3.6222 23 6 9.4585 -4.1868 7.2581 24 6 8.0806 -4.1538 7.2008 25 6 3.1698 -0.8226 3.8190 26 6 2.7155 -0.1698 2.6883 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7564 0.0005 31 1 2.1207 2.2703 -0.8899 32 1 2.1207 2.2702 0.8901 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3644 -2.4110 35 1 3.5740 -0.8778 -1.5213 36 1 2.5363 -2.7986 0.5823 37 1 3.3557 -3.9596 2.5932 38 1 3.5426 -2.3812 5.9036 39 1 3.5433 -3.9225 5.0134 40 1 7.7232 -2.4752 4.2718 41 1 10.1786 -2.5389 4.3991 42 1 12.0463 -3.2207 7.2684 43 1 11.9006 -5.4430 5.4058 44 1 9.9518 -4.6668 8.0903 45 1 7.4952 -4.6077 7.9868 46 1 3.3448 -0.2681 4.7291 47 1 2.5356 0.8948 2.7151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_479212_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:43:49 Heat of formation + Delta-G solvation = -113.580394 kcal Electronic energy + Delta-G solvation = -26120.885306 eV Core-core repulsion = 22356.701474 eV Total energy + Delta-G solvation = -3764.183833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67418 -40.46568 -39.86886 -37.75953 -37.32025 -33.38969 -32.74810 -32.18793 -31.93059 -29.62709 -28.48254 -28.44849 -28.15639 -26.87837 -23.99059 -23.86605 -23.52570 -22.14532 -21.74114 -19.18278 -18.66342 -18.13041 -17.45476 -17.29091 -16.95351 -16.37016 -16.12725 -15.94295 -15.81144 -15.63664 -15.17353 -14.71213 -14.44039 -14.42742 -14.23498 -14.20414 -14.19634 -13.95807 -13.87080 -13.66189 -13.43603 -13.39578 -13.29649 -13.29009 -13.13792 -12.74815 -12.47870 -12.35609 -12.21767 -12.09504 -11.71857 -11.64009 -11.56702 -11.07541 -10.94412 -10.87656 -10.57388 -10.16013 -10.07253 -9.82675 -9.73462 -0.48530 0.08716 0.21689 0.50060 1.03366 1.34186 1.41828 1.47773 1.61468 1.67048 1.80979 1.83164 1.97328 2.50298 2.60957 2.91383 3.31131 3.47023 3.54494 3.70201 3.78771 3.81151 3.87951 4.07783 4.17487 4.21155 4.29296 4.36508 4.43762 4.46356 4.63317 4.63498 4.66724 4.67911 4.71894 4.72354 4.72966 4.73332 4.84362 4.95257 5.04099 5.10882 5.16780 5.26922 5.32165 5.39986 5.44266 5.46310 5.50574 5.57753 5.57892 5.66725 6.06304 6.41922 6.71792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.360 4.360 6 C -0.092 4.092 7 C -0.105 4.105 8 C -0.091 4.091 9 C 0.110 3.890 10 O -0.346 6.346 11 C 0.509 3.491 12 O -0.502 6.502 13 C -0.122 4.122 14 C -0.054 4.054 15 C -0.140 4.140 16 C -0.084 4.084 17 C -0.086 4.086 18 O -0.535 6.535 19 Si 0.949 3.051 20 H -0.248 1.248 21 H -0.252 1.252 22 H -0.250 1.250 23 C -0.101 4.101 24 C -0.052 4.052 25 C -0.105 4.105 26 C -0.091 4.091 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.142 0.858 41 H 0.130 0.870 42 H 0.123 0.877 43 H 0.378 0.622 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.121 0.879 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 1.892 -3.311 3.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.252 2.748 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.402 4.402 6 C -0.109 4.109 7 C -0.124 4.124 8 C -0.091 4.091 9 C 0.037 3.963 10 O -0.264 6.264 11 C 0.354 3.646 12 O -0.391 6.391 13 C -0.123 4.123 14 C -0.073 4.073 15 C -0.157 4.157 16 C -0.085 4.085 17 C -0.197 4.197 18 O -0.340 6.340 19 Si 0.771 3.229 20 H -0.172 1.172 21 H -0.175 1.175 22 H -0.173 1.173 23 C -0.119 4.119 24 C -0.071 4.071 25 C -0.124 4.124 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.225 0.775 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.139 0.861 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.808 2.335 -3.099 3.963 hybrid contribution -0.606 -0.497 0.138 0.796 sum 0.202 1.837 -2.961 3.491 Atomic orbital electron populations 1.26127 1.20426 1.04609 1.04531 0.78182 0.66870 0.66124 0.63655 1.26133 1.06481 1.18536 1.04597 1.26133 1.06478 1.08060 1.15073 1.27497 1.02889 0.99524 1.10254 1.21087 0.97465 0.94667 0.97722 1.21165 0.98737 0.99915 0.92541 1.19473 1.01065 0.94218 0.94342 1.21892 0.76230 1.01412 0.96816 1.86604 1.23249 1.71157 1.45346 1.21181 0.89038 0.75045 0.79367 1.90861 1.66616 1.43169 1.38472 1.19165 0.89062 1.05579 0.98500 1.21430 0.93392 0.95163 0.97271 1.21081 0.94960 1.01204 0.98489 1.20667 0.96719 0.96595 0.94489 1.25096 0.91835 0.90536 1.12230 1.86546 1.78457 1.24036 1.44966 0.85675 0.80743 0.79452 0.77008 1.17165 1.17540 1.17349 1.21019 0.92712 0.99181 0.99011 1.21376 0.94682 0.94779 0.96225 1.21167 0.98746 0.93522 0.98925 1.21085 0.97487 0.99785 0.92578 0.91157 0.90993 0.91154 0.91037 0.90917 0.91161 0.91156 0.90921 0.91038 0.85827 0.86066 0.90012 0.90013 0.83980 0.85262 0.85942 0.77475 0.84247 0.84043 0.86063 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.78 8.65 101.05 0.87 1.65 16 2 Si 1.06 -2.98 12.32 -169.99 -2.09 -5.07 16 3 C -0.45 0.94 8.53 101.05 0.86 1.80 16 4 C -0.45 0.94 8.53 101.05 0.86 1.80 16 5 C -0.36 0.17 4.59 -39.58 -0.18 -0.01 16 6 C -0.09 -0.01 9.29 -39.58 -0.37 -0.37 16 7 C -0.11 -0.09 9.70 -39.58 -0.38 -0.48 16 8 C -0.09 -0.13 5.52 -104.62 -0.58 -0.70 16 9 C 0.11 0.17 5.60 36.01 0.20 0.37 16 10 O -0.35 -0.88 9.46 -40.54 -0.38 -1.27 16 11 C 0.51 1.71 7.90 34.61 0.27 1.98 16 12 O -0.50 -2.87 16.14 -19.24 -0.31 -3.18 16 13 C -0.12 -0.22 5.87 -104.98 -0.62 -0.83 16 14 C -0.05 -0.02 9.62 -39.17 -0.38 -0.40 16 15 C -0.14 0.07 8.65 -39.64 -0.34 -0.28 16 16 C -0.08 0.04 5.36 -104.53 -0.56 -0.52 16 17 C -0.09 0.13 2.80 36.01 0.10 0.23 16 18 O -0.53 0.36 12.83 -35.23 -0.45 -0.09 16 19 Si 0.95 -1.45 25.13 -169.99 -4.27 -5.72 16 20 H -0.25 0.22 7.11 56.52 0.40 0.62 16 21 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 22 H -0.25 0.36 7.04 56.52 0.40 0.76 16 23 C -0.10 0.01 9.66 -39.64 -0.38 -0.37 16 24 C -0.05 -0.05 9.60 -39.17 -0.38 -0.43 16 25 C -0.11 -0.10 9.70 -39.58 -0.38 -0.48 16 26 C -0.09 -0.01 9.29 -39.58 -0.37 -0.37 16 27 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 28 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 29 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.16 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.16 7.68 -51.93 -0.40 -0.56 16 34 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 37 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 38 H 0.08 0.09 8.08 -51.93 -0.42 -0.33 16 39 H 0.08 0.09 8.08 -51.93 -0.42 -0.33 16 40 H 0.14 -0.10 7.61 -52.49 -0.40 -0.50 16 41 H 0.13 -0.25 4.84 -52.48 -0.25 -0.50 16 42 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 43 H 0.38 -1.44 8.70 45.56 0.40 -1.04 16 44 H 0.14 -0.18 8.06 -52.49 -0.42 -0.60 16 45 H 0.14 0.11 7.65 -52.49 -0.40 -0.29 16 46 H 0.12 -0.04 8.06 -52.48 -0.42 -0.47 16 47 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 LS Contribution 399.05 15.07 6.01 6.01 Total: 0.00 -6.67 399.05 -9.69 -16.36 By element: Atomic # 1 Polarization: -3.18 SS G_CDS: -6.45 Total: -9.63 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.74 Total: 2.58 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -1.15 Total: -4.54 kcal Atomic # 14 Polarization: -4.42 SS G_CDS: -6.37 Total: -10.79 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -6.67 -9.69 -16.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.220 kcal (2) G-P(sol) polarization free energy of solvation -6.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds