Wall clock time and date at job start Sat Mar 6 2021 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86299 * 109.46996 * 2 1 4 4 C 1.86299 * 109.46971 * 240.00046 * 2 1 3 5 5 C 1.86798 * 109.46871 * 120.00035 * 2 1 3 6 6 C 1.38238 * 119.99902 * 89.99871 * 5 2 1 7 7 C 1.38238 * 120.00072 * 180.02562 * 6 5 2 8 8 C 1.38241 * 119.99590 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99576 * 179.97438 * 8 7 6 10 10 O 1.45198 * 109.47036 * 89.99862 * 9 8 7 11 11 C 1.34719 * 117.00054 * 179.97438 * 10 9 8 12 12 O 1.21463 * 119.99677 * 0.02562 * 11 10 9 13 13 C 1.47730 * 119.99942 * 180.02562 * 11 10 9 14 14 C 1.39627 * 120.14697 * 359.72315 * 13 11 10 15 15 C 1.37951 * 119.83998 * 179.81393 * 14 13 11 16 16 C 1.38362 * 120.15221 * 0.44182 * 15 14 13 17 17 C 1.50699 * 119.84755 * 179.76516 * 16 15 14 18 18 O 1.42898 * 109.47305 * 245.02211 * 17 16 15 19 19 Si 1.86304 * 109.47069 * 5.02507 * 17 16 15 20 20 H 1.48499 * 109.47044 * 59.99863 * 19 17 16 21 21 H 1.48500 * 109.46930 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47165 * 299.99916 * 19 17 16 23 23 C 1.38372 * 120.30610 * 359.79151 * 16 15 14 24 24 C 1.37943 * 120.14597 * 359.97438 * 23 16 15 25 25 C 1.38233 * 120.00269 * 0.24973 * 8 7 6 26 26 C 1.38230 * 120.00102 * 270.02233 * 5 2 1 27 27 H 1.09001 * 109.47306 * 299.99797 * 1 2 3 28 28 H 1.09000 * 109.47398 * 59.99687 * 1 2 3 29 29 H 1.08997 * 109.47535 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47456 * 300.00089 * 3 2 1 32 32 H 1.09001 * 109.46932 * 60.00528 * 3 2 1 33 33 H 1.08997 * 109.46934 * 299.99738 * 4 2 1 34 34 H 1.08991 * 109.46995 * 60.00209 * 4 2 1 35 35 H 1.09000 * 109.46605 * 179.97438 * 4 2 1 36 36 H 1.08002 * 119.99952 * 0.02562 * 6 5 2 37 37 H 1.07991 * 120.00062 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.47060 * 210.00086 * 9 8 7 39 39 H 1.09001 * 109.47380 * 330.00174 * 9 8 7 40 40 H 1.07994 * 120.07953 * 0.02669 * 14 13 11 41 41 H 1.08007 * 119.91794 * 180.19000 * 15 14 13 42 42 H 1.09004 * 109.46963 * 125.02583 * 17 16 15 43 43 H 0.96706 * 113.99638 * 60.00348 * 18 17 16 44 44 H 1.07989 * 119.92666 * 179.97438 * 23 16 15 45 45 H 1.07998 * 120.07668 * 179.97438 * 24 23 16 46 46 H 1.08003 * 119.99927 * 179.72604 * 25 8 7 47 47 H 1.08000 * 120.00286 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4856 -0.8806 1.5252 6 6 2.7159 -2.2432 1.4910 7 6 3.1762 -2.8950 2.6198 8 6 3.4055 -2.1842 3.7831 9 6 3.9067 -2.8949 5.0139 10 8 5.3587 -2.8950 5.0152 11 6 5.9693 -3.4949 6.0554 12 8 5.3069 -4.0043 6.9369 13 6 7.4445 -3.5332 6.1239 14 6 8.2089 -2.9536 5.1093 15 6 9.5861 -2.9896 5.1817 16 6 10.2099 -3.6062 6.2517 17 6 11.7148 -3.6461 6.3211 18 8 12.1603 -5.0005 6.2255 19 14 12.4279 -2.6569 4.9126 20 1 11.9650 -1.2494 5.0120 21 1 13.9108 -2.6958 4.9814 22 1 11.9764 -3.2365 3.6222 23 6 9.4585 -4.1868 7.2581 24 6 8.0806 -4.1538 7.2008 25 6 3.1698 -0.8226 3.8190 26 6 2.7155 -0.1698 2.6883 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5739 1.7564 0.0005 31 1 2.1207 2.2703 -0.8899 32 1 2.1207 2.2702 0.8901 33 1 2.1206 -1.9059 -1.5211 34 1 2.1207 -0.3644 -2.4110 35 1 3.5740 -0.8778 -1.5213 36 1 2.5363 -2.7986 0.5823 37 1 3.3557 -3.9596 2.5932 38 1 3.5426 -2.3812 5.9036 39 1 3.5433 -3.9225 5.0134 40 1 7.7232 -2.4752 4.2718 41 1 10.1786 -2.5389 4.3991 42 1 12.0463 -3.2207 7.2684 43 1 11.9006 -5.4430 5.4058 44 1 9.9518 -4.6668 8.0903 45 1 7.4952 -4.6077 7.9868 46 1 3.3448 -0.2681 4.7291 47 1 2.5356 0.8948 2.7151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479212_9435856.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 06:43:48 Heat of formation + Delta-G solvation = -103.551189 kcal Electronic energy + Delta-G solvation = -26120.450407 eV Core-core repulsion = 22356.701474 eV Total energy + Delta-G solvation = -3763.748934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.85557 -40.48202 -39.89948 -37.79435 -37.45390 -33.43476 -32.76080 -32.19363 -31.91247 -29.45176 -28.28780 -28.27242 -28.18698 -26.89633 -24.02205 -23.89808 -23.51356 -22.15991 -21.84115 -19.29784 -18.72075 -18.17169 -17.65232 -17.31608 -16.91769 -16.28364 -16.11520 -16.00573 -15.80325 -15.63521 -15.11344 -14.74679 -14.43769 -14.40182 -14.26452 -14.16288 -14.04973 -13.85823 -13.72714 -13.64173 -13.48871 -13.38102 -13.15446 -13.10637 -12.96045 -12.73255 -12.46214 -12.31401 -12.14669 -12.13055 -11.78295 -11.77304 -11.64233 -10.92524 -10.79757 -10.75234 -10.48755 -10.17378 -10.08823 -9.83454 -9.72539 -0.56356 0.07048 0.21380 0.49397 1.15459 1.28759 1.47326 1.52946 1.54119 1.83432 1.93374 2.03112 2.12664 2.56462 2.66549 2.91279 3.36592 3.52300 3.57350 3.67533 3.73547 3.80845 3.84392 4.08912 4.18051 4.18481 4.24278 4.32923 4.51155 4.51238 4.68192 4.68220 4.84922 4.85206 4.86916 4.89274 4.90191 4.90625 4.91096 4.95499 4.99070 5.11451 5.13425 5.22000 5.28927 5.38114 5.54046 5.56639 5.59910 5.67053 5.68436 5.71451 6.08832 6.49313 6.67644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.129 2.871 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.101 4.101 7 C -0.120 4.120 8 C -0.105 4.105 9 C 0.109 3.891 10 O -0.347 6.347 11 C 0.510 3.490 12 O -0.534 6.534 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.141 4.141 16 C -0.079 4.079 17 C -0.084 4.084 18 O -0.549 6.549 19 Si 0.979 3.021 20 H -0.255 1.255 21 H -0.276 1.276 22 H -0.247 1.247 23 C -0.102 4.102 24 C -0.060 4.060 25 C -0.120 4.120 26 C -0.101 4.101 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.142 0.858 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.132 0.868 43 H 0.391 0.609 44 H 0.152 0.848 45 H 0.138 0.862 46 H 0.127 0.873 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 2.417 -4.347 5.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.316 2.684 3 C -0.570 4.570 4 C -0.569 4.569 5 C -0.410 4.410 6 C -0.119 4.119 7 C -0.138 4.138 8 C -0.105 4.105 9 C 0.036 3.964 10 O -0.264 6.264 11 C 0.356 3.644 12 O -0.426 6.426 13 C -0.141 4.141 14 C -0.071 4.071 15 C -0.158 4.158 16 C -0.080 4.080 17 C -0.194 4.194 18 O -0.356 6.356 19 Si 0.803 3.197 20 H -0.179 1.179 21 H -0.201 1.201 22 H -0.171 1.171 23 C -0.120 4.120 24 C -0.078 4.078 25 C -0.138 4.138 26 C -0.119 4.119 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.150 0.850 43 H 0.240 0.760 44 H 0.169 0.831 45 H 0.156 0.844 46 H 0.145 0.855 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.266 2.850 -4.143 5.186 hybrid contribution -0.723 -0.654 0.435 1.068 sum 0.542 2.197 -3.708 4.344 Atomic orbital electron populations 1.26304 1.21696 1.04459 1.04575 0.77143 0.65075 0.64627 0.61539 1.26277 1.06456 1.19341 1.04886 1.26274 1.06458 1.08490 1.15724 1.28102 1.02062 0.99597 1.11221 1.21402 0.97175 0.95201 0.98119 1.21375 0.99105 1.00458 0.92824 1.19533 1.01911 0.94627 0.94416 1.21952 0.75745 1.01525 0.97199 1.86605 1.23869 1.70849 1.45028 1.21518 0.89687 0.74248 0.78898 1.90834 1.67386 1.44740 1.39591 1.19211 0.88214 1.07062 0.99602 1.21545 0.93782 0.94772 0.97048 1.21275 0.94692 1.00983 0.98884 1.20837 0.97314 0.95762 0.94076 1.25144 0.90916 0.90395 1.12950 1.86520 1.78595 1.24361 1.46135 0.85245 0.78791 0.78787 0.76849 1.17872 1.20086 1.17100 1.21162 0.92185 0.99132 0.99547 1.21438 0.95288 0.94960 0.96097 1.21377 0.99126 0.93555 0.99726 1.21399 0.97209 1.00834 0.92461 0.91432 0.90654 0.91422 0.91239 0.90644 0.90918 0.90901 0.90648 0.91233 0.84037 0.85455 0.90064 0.90049 0.83156 0.83684 0.84999 0.76002 0.83079 0.84427 0.85471 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.88 8.65 113.37 0.98 2.86 16 2 Si 1.13 -7.25 12.32 68.60 0.85 -6.40 16 3 C -0.46 2.32 8.53 113.37 0.97 3.29 16 4 C -0.46 2.34 8.53 113.37 0.97 3.31 16 5 C -0.37 0.45 4.59 22.27 0.10 0.55 16 6 C -0.10 -0.01 9.29 22.27 0.21 0.20 16 7 C -0.12 -0.31 9.70 22.27 0.22 -0.09 16 8 C -0.10 -0.41 5.52 -19.86 -0.11 -0.52 16 9 C 0.11 0.52 5.60 71.24 0.40 0.92 16 10 O -0.35 -2.29 9.46 -56.28 -0.53 -2.83 16 11 C 0.51 4.30 7.90 70.33 0.56 4.85 16 12 O -0.53 -7.26 16.14 19.96 0.32 -6.93 16 13 C -0.14 -0.64 5.87 -20.10 -0.12 -0.76 16 14 C -0.05 -0.05 9.62 22.54 0.22 0.17 16 15 C -0.14 0.22 8.65 22.23 0.19 0.41 16 16 C -0.08 0.13 5.36 -19.80 -0.11 0.03 16 17 C -0.08 0.32 2.80 71.24 0.20 0.52 16 18 O -0.55 1.22 12.83 -148.98 -1.91 -0.70 16 19 Si 0.98 -3.71 25.13 68.60 1.72 -1.99 16 20 H -0.25 0.68 7.11 99.48 0.71 1.38 16 21 H -0.28 -0.08 7.11 99.48 0.71 0.63 16 22 H -0.25 1.04 7.04 99.48 0.70 1.74 16 23 C -0.10 0.03 9.66 22.23 0.21 0.24 16 24 C -0.06 -0.18 9.60 22.54 0.22 0.04 16 25 C -0.12 -0.31 9.70 22.27 0.22 -0.10 16 26 C -0.10 -0.01 9.29 22.27 0.21 0.19 16 27 H 0.07 -0.22 7.96 -2.39 -0.02 -0.24 16 28 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 29 H 0.07 -0.23 7.96 -2.39 -0.02 -0.24 16 30 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 31 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 32 H 0.07 -0.39 7.69 -2.39 -0.02 -0.41 16 33 H 0.07 -0.39 7.68 -2.39 -0.02 -0.41 16 34 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 35 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 36 H 0.14 -0.61 7.43 -2.91 -0.02 -0.63 16 37 H 0.13 0.03 8.06 -2.92 -0.02 0.01 16 38 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 39 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 40 H 0.15 -0.20 7.61 -2.91 -0.02 -0.22 16 41 H 0.15 -0.74 4.84 -2.91 -0.01 -0.75 16 42 H 0.13 -0.76 7.96 -2.38 -0.02 -0.78 16 43 H 0.39 -3.32 8.70 -74.05 -0.64 -3.97 16 44 H 0.15 -0.45 8.06 -2.92 -0.02 -0.47 16 45 H 0.14 0.44 7.65 -2.91 -0.02 0.42 16 46 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 47 H 0.14 -0.60 7.43 -2.91 -0.02 -0.62 16 Total: 0.00 -15.50 399.05 7.04 -8.46 By element: Atomic # 1 Polarization: -6.80 SS G_CDS: 1.07 Total: -5.73 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: 5.52 Total: 16.12 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -2.12 Total: -10.46 kcal Atomic # 14 Polarization: -10.96 SS G_CDS: 2.57 Total: -8.39 kcal Total: -15.50 7.04 -8.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479212_9435856.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.089 kcal (2) G-P(sol) polarization free energy of solvation -15.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds