Wall clock time and date at job start Sat Mar 6 2021 10:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86299 * 109.46916 * 2 1 4 4 C 1.50698 * 109.46950 * 119.99899 * 2 1 3 5 5 C 1.38266 * 119.94594 * 65.00631 * 4 2 1 6 6 C 1.38142 * 120.05701 * 179.97438 * 5 4 2 7 7 C 1.38737 * 119.94530 * 0.02562 * 6 5 4 8 8 O 1.35902 * 120.05555 * 180.02562 * 7 6 5 9 9 C 1.42901 * 116.99739 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46875 * 179.97438 * 9 8 7 11 11 O 1.20826 * 120.00181 * 0.02562 * 10 9 8 12 12 O 1.34229 * 119.99678 * 179.97438 * 10 9 8 13 13 C 1.45199 * 116.99965 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47279 * 179.97438 * 13 12 10 15 15 H 1.08993 * 112.90825 * 316.24965 * 14 13 12 16 16 C 1.53962 * 113.66529 * 87.55212 * 14 13 12 17 17 C 1.53782 * 87.11063 * 139.88900 * 16 14 13 18 18 H 1.08996 * 113.68722 * 89.19879 * 17 16 14 19 19 O 1.42901 * 113.61110 * 220.08969 * 17 16 14 20 20 C 1.53781 * 87.08260 * 334.63747 * 17 16 14 21 21 C 1.38732 * 119.88445 * 0.27004 * 7 6 5 22 22 C 1.38139 * 119.94764 * 359.47672 * 21 7 6 23 23 H 0.96698 * 113.99996 * 299.99980 * 1 2 3 24 24 H 1.08999 * 109.46877 * 240.00079 * 2 1 3 25 25 H 1.48495 * 110.00223 * 178.67981 * 3 2 1 26 26 H 1.48503 * 110.00216 * 300.00118 * 3 2 1 27 27 H 1.08001 * 119.97165 * 359.97419 * 5 4 2 28 28 H 1.08003 * 120.02958 * 179.97438 * 6 5 4 29 29 H 1.09004 * 109.46992 * 59.99386 * 9 8 7 30 30 H 1.09002 * 109.47009 * 299.99865 * 9 8 7 31 31 H 1.09002 * 109.47484 * 59.99677 * 13 12 10 32 32 H 1.09004 * 109.46936 * 299.99889 * 13 12 10 33 33 H 1.08997 * 113.53543 * 25.33574 * 16 14 13 34 34 H 1.08994 * 113.66446 * 254.45777 * 16 14 13 35 35 H 0.96705 * 113.99992 * 277.49360 * 19 17 16 36 36 H 1.09002 * 113.61445 * 139.98212 * 20 17 16 37 37 H 1.09002 * 113.61408 * 270.79943 * 20 17 16 38 38 H 1.07998 * 120.02562 * 179.72363 * 21 7 6 39 39 H 1.08005 * 119.97547 * 180.23045 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 1.6841 -2.0605 1.3972 6 6 2.1439 -2.7141 2.5240 7 6 2.8539 -2.0145 3.4891 8 8 3.3077 -2.6554 4.5983 9 6 4.0316 -1.8722 5.5494 10 6 4.4513 -2.7455 6.7036 11 8 4.1609 -3.9183 6.7108 12 8 5.1488 -2.2206 7.7233 13 6 5.5198 -3.1207 8.8006 14 6 6.3041 -2.3483 9.8632 15 1 7.0493 -1.6772 9.4363 16 6 5.4125 -1.6829 10.9275 17 6 6.4656 -2.1088 11.9640 18 1 7.2555 -1.3728 12.1135 19 8 5.9036 -2.5771 13.1916 20 6 6.8507 -3.2373 10.9929 21 6 3.0953 -0.6586 3.3223 22 6 2.6379 -0.0107 2.1913 23 1 -0.3933 0.4417 0.7650 24 1 1.7923 -0.5138 -0.8900 25 1 3.5345 1.7704 0.0321 26 1 1.5614 2.4679 -1.2085 27 1 1.1310 -2.6046 0.6459 28 1 1.9502 -3.7686 2.6540 29 1 3.3954 -1.0667 5.9162 30 1 4.9160 -1.4486 5.0734 31 1 6.1400 -3.9250 8.4048 32 1 4.6197 -3.5425 9.2479 33 1 4.4484 -2.1747 11.0569 34 1 5.3255 -0.6026 10.8120 35 1 5.6594 -1.8719 13.8067 36 1 7.9249 -3.4117 10.9302 37 1 6.2809 -4.1545 11.1413 38 1 3.6438 -0.1109 4.0743 39 1 2.8288 1.0441 2.0592 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_479556_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:16:12 Heat of formation + Delta-G solvation = -141.934486 kcal Electronic energy + Delta-G solvation = -22549.676145 eV Core-core repulsion = 18811.783546 eV Total energy + Delta-G solvation = -3737.892599 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89539 -41.18873 -40.32463 -39.22509 -37.60968 -37.11816 -36.05986 -32.54647 -31.86036 -30.76385 -29.03586 -26.88508 -26.30432 -24.37067 -23.58200 -22.59229 -21.97813 -20.70400 -19.72922 -18.77743 -18.44742 -18.33886 -18.09111 -17.66506 -16.84111 -16.79678 -16.45833 -16.36058 -15.95589 -15.63840 -15.36309 -15.07627 -14.73560 -14.42268 -14.28570 -13.98237 -13.72255 -13.58999 -13.56727 -13.45995 -12.90136 -12.53713 -12.31146 -12.25627 -12.19499 -12.09282 -11.82804 -11.76914 -11.50192 -11.33681 -10.86742 -10.44684 -10.10937 -9.30986 -5.07773 0.21568 0.23560 0.90437 1.01575 1.26797 1.59779 1.94907 2.32484 2.59279 3.04781 3.26303 3.36157 3.43639 3.46176 3.58750 3.66851 3.73329 3.74721 3.78226 3.80839 3.82365 4.04158 4.11426 4.19991 4.31793 4.37150 4.45817 4.50716 4.59095 4.63641 4.64267 4.82548 4.88797 4.96745 5.07641 5.16713 5.17686 5.29105 5.44658 5.59988 6.15365 6.56033 6.58605 6.60994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.064 4.064 3 Si 0.685 3.315 4 C -0.155 4.155 5 C -0.051 4.051 6 C -0.143 4.143 7 C 0.134 3.866 8 O -0.294 6.294 9 C 0.068 3.932 10 C 0.464 3.536 11 O -0.481 6.481 12 O -0.352 6.352 13 C 0.081 3.919 14 C -0.111 4.111 15 H 0.108 0.892 16 C -0.165 4.165 17 C 0.076 3.924 18 H 0.086 0.914 19 O -0.560 6.560 20 C -0.120 4.120 21 C -0.205 4.205 22 C -0.074 4.074 23 H 0.379 0.621 24 H 0.113 0.887 25 H -0.258 1.258 26 H -0.255 1.255 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.381 0.619 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 5.636 3.026 6.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.175 4.175 3 Si 0.587 3.413 4 C -0.156 4.156 5 C -0.069 4.069 6 C -0.162 4.162 7 C 0.089 3.911 8 O -0.207 6.207 9 C -0.008 4.008 10 C 0.304 3.696 11 O -0.366 6.366 12 O -0.269 6.269 13 C 0.008 3.992 14 C -0.130 4.130 15 H 0.126 0.874 16 C -0.202 4.202 17 C 0.017 3.983 18 H 0.104 0.896 19 O -0.365 6.365 20 C -0.158 4.158 21 C -0.224 4.224 22 C -0.091 4.091 23 H 0.226 0.774 24 H 0.130 0.870 25 H -0.183 1.183 26 H -0.180 1.180 27 H 0.153 0.847 28 H 0.154 0.846 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.229 0.771 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.028 4.759 1.862 5.498 hybrid contribution 0.146 -0.006 0.180 0.232 sum 2.174 4.753 2.042 5.611 Atomic orbital electron populations 1.86510 1.17136 1.81698 1.49245 1.24986 0.85211 1.09911 0.97368 0.94862 0.80981 0.78126 0.87363 1.20280 1.02329 0.95179 0.97778 1.20870 0.96359 0.93482 0.96184 1.20539 1.01076 1.01107 0.93478 1.19005 0.94674 0.91023 0.86410 1.86100 1.68698 1.36846 1.29053 1.21891 0.98795 0.92521 0.87593 1.22854 0.76051 0.87558 0.83121 1.90756 1.50841 1.17351 1.77693 1.86416 1.66539 1.43815 1.30135 1.23168 0.99711 0.91486 0.84847 1.22413 0.98887 0.99044 0.92623 0.87391 1.23836 0.99089 1.01625 0.95688 1.23272 0.95173 0.96667 0.83146 0.89642 1.86534 1.83554 1.37566 1.28876 1.23076 1.02135 0.98206 0.92375 1.21203 1.06750 0.93555 1.00846 1.20779 0.96362 0.99078 0.92923 0.77378 0.86968 1.18286 1.17964 0.84707 0.84570 0.87264 0.87344 0.90436 0.90451 0.88993 0.90612 0.77142 0.89957 0.88653 0.84787 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.02 12.83 -35.23 -0.45 -0.47 16 2 C -0.06 0.03 2.80 36.00 0.10 0.13 16 3 Si 0.68 -0.98 29.80 -169.99 -5.07 -6.04 16 4 C -0.16 0.03 5.35 -104.60 -0.56 -0.53 16 5 C -0.05 -0.02 9.68 -39.61 -0.38 -0.41 16 6 C -0.14 -0.17 9.99 -39.43 -0.39 -0.56 16 7 C 0.13 0.14 6.69 -39.21 -0.26 -0.12 16 8 O -0.29 -0.60 9.67 -39.38 -0.38 -0.98 16 9 C 0.07 -0.08 5.33 36.01 0.19 0.11 16 10 C 0.46 0.74 8.03 36.01 0.29 1.03 16 11 O -0.48 -2.66 16.25 -25.48 -0.41 -3.07 16 12 O -0.35 -0.12 10.22 -39.26 -0.40 -0.52 16 13 C 0.08 -0.02 5.30 37.16 0.20 0.18 16 14 C -0.11 0.20 4.03 -89.71 -0.36 -0.16 16 15 H 0.11 -0.28 8.14 -51.93 -0.42 -0.70 16 16 C -0.16 0.28 7.47 -25.82 -0.19 0.09 16 17 C 0.08 -0.11 5.22 -25.92 -0.14 -0.24 16 18 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 19 O -0.56 -0.06 13.67 -35.23 -0.48 -0.54 16 20 C -0.12 0.16 7.47 -25.92 -0.19 -0.03 16 21 C -0.20 0.20 9.04 -39.43 -0.36 -0.16 16 22 C -0.07 0.08 8.66 -39.60 -0.34 -0.26 16 23 H 0.38 -1.45 8.70 45.56 0.40 -1.05 16 24 H 0.11 -0.01 7.96 -51.93 -0.41 -0.42 16 25 H -0.26 -0.23 7.11 56.52 0.40 0.18 16 26 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 27 H 0.14 -0.04 8.06 -52.49 -0.42 -0.46 16 28 H 0.14 0.09 8.06 -52.48 -0.42 -0.33 16 29 H 0.11 -0.42 7.65 -51.93 -0.40 -0.81 16 30 H 0.11 -0.39 7.67 -51.93 -0.40 -0.79 16 31 H 0.08 -0.01 8.13 -51.93 -0.42 -0.43 16 32 H 0.08 0.02 7.84 -51.93 -0.41 -0.39 16 33 H 0.09 -0.08 7.90 -51.93 -0.41 -0.49 16 34 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 35 H 0.38 -1.50 9.12 45.56 0.42 -1.08 16 36 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 37 H 0.09 -0.05 8.10 -51.93 -0.42 -0.47 16 38 H 0.13 -0.49 6.30 -52.49 -0.33 -0.82 16 39 H 0.13 -0.43 4.90 -52.48 -0.26 -0.69 16 LS Contribution 334.67 15.07 5.04 5.04 Total: 0.00 -9.33 334.67 -8.93 -18.26 By element: Atomic # 1 Polarization: -6.36 SS G_CDS: -4.38 Total: -10.74 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.40 Total: -0.94 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: -2.13 Total: -5.59 kcal Atomic # 14 Polarization: -0.98 SS G_CDS: -5.07 Total: -6.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -9.33 -8.93 -18.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.670 kcal (2) G-P(sol) polarization free energy of solvation -9.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds