Wall clock time and date at job start Sat Mar 6 2021 07:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47256 * 2 1 4 4 C 1.50699 * 109.47093 * 239.99932 * 2 1 3 5 5 C 1.38264 * 119.94736 * 300.00039 * 4 2 1 6 6 C 1.38142 * 120.05865 * 179.97438 * 5 4 2 7 7 C 1.38732 * 119.94368 * 0.02562 * 6 5 4 8 8 O 1.35900 * 120.05724 * 180.02562 * 7 6 5 9 9 C 1.42898 * 117.00172 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47171 * 179.97438 * 9 8 7 11 11 O 1.20824 * 120.00141 * 0.02562 * 10 9 8 12 12 O 1.34226 * 119.99900 * 180.02562 * 10 9 8 13 13 C 1.45203 * 116.99798 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46837 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.46790 * 179.97438 * 14 13 12 16 16 O 1.42966 * 109.46860 * 299.99701 * 14 13 12 17 17 C 1.43100 * 113.76421 * 178.79439 * 16 14 13 18 18 C 1.53248 * 108.94457 * 302.02872 * 17 16 14 19 19 H 1.08994 * 109.58074 * 294.71968 * 18 17 16 20 20 N 1.46502 * 109.57753 * 174.33220 * 18 17 16 21 21 C 1.34528 * 124.45777 * 299.70749 * 20 18 17 22 22 O 1.21437 * 125.71266 * 0.02646 * 21 20 18 23 23 C 1.47818 * 108.57718 * 179.89977 * 21 20 18 24 24 C 1.40947 * 105.88242 * 0.34499 * 23 21 20 25 25 C 1.38560 * 119.82310 * 179.79430 * 24 23 21 26 26 C 1.38611 * 119.71991 * 0.02562 * 25 24 23 27 27 C 1.38232 * 120.45897 * 359.97438 * 26 25 24 28 28 C 1.38562 * 134.29735 * 180.09617 * 23 21 20 29 29 C 1.34523 * 124.46034 * 120.00000 * 20 18 17 30 30 O 1.21449 * 125.71084 * 359.96573 * 29 20 18 31 31 C 1.53267 * 108.84529 * 54.52777 * 18 17 16 32 32 O 1.42961 * 109.47131 * 59.99672 * 14 13 12 33 33 C 1.38732 * 119.88726 * 0.26951 * 7 6 5 34 34 C 1.38138 * 119.94426 * 359.47443 * 33 7 6 35 35 H 0.96693 * 113.99949 * 60.00152 * 1 2 3 36 36 H 1.09003 * 109.47485 * 120.00453 * 2 1 3 37 37 H 1.48501 * 109.99441 * 60.00073 * 3 2 1 38 38 H 1.48498 * 110.00164 * 181.31804 * 3 2 1 39 39 H 1.08009 * 119.97297 * 359.97438 * 5 4 2 40 40 H 1.08005 * 120.03049 * 179.97438 * 6 5 4 41 41 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 42 42 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 43 43 H 1.08993 * 109.47391 * 299.99599 * 13 12 10 44 44 H 1.09000 * 109.47246 * 59.99772 * 13 12 10 45 45 H 1.09002 * 109.55727 * 61.87702 * 17 16 14 46 46 H 1.09004 * 109.55139 * 182.08171 * 17 16 14 47 47 H 1.08004 * 120.13909 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.77280 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.77035 * 180.02562 * 27 26 25 50 50 H 1.08004 * 120.14523 * 0.30062 * 28 23 21 51 51 H 1.09001 * 109.55834 * 65.30782 * 31 18 17 52 52 H 1.08999 * 109.55982 * 185.63429 * 31 18 17 53 53 H 1.08003 * 120.02290 * 179.72651 * 33 7 6 54 54 H 1.07998 * 119.97745 * 180.27927 * 34 33 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.5966 -2.0342 -1.4482 6 6 2.0554 -2.6875 -2.5756 7 6 2.8531 -2.0144 -3.4895 8 8 3.3052 -2.6547 -4.5997 9 6 4.1213 -1.8993 -5.4972 10 6 4.5258 -2.7680 -6.6603 11 8 4.1531 -3.9160 -6.7153 12 8 5.3001 -2.2663 -7.6352 13 6 5.6510 -3.1605 -8.7242 14 6 6.5301 -2.4166 -9.7316 15 1 6.7938 -3.0879 -10.5489 16 8 5.8146 -1.2925 -10.2497 17 6 6.5656 -0.5122 -11.1850 18 6 7.8494 -0.0222 -10.5066 19 1 7.5965 0.6633 -9.6979 20 7 8.6927 0.6635 -11.4889 21 6 9.1857 0.0898 -12.6014 22 8 9.0047 -1.0606 -12.9455 23 6 9.9821 1.0951 -13.3364 24 6 9.9180 2.2749 -12.5679 25 6 10.5792 3.4141 -12.9979 26 6 11.2990 3.3852 -14.1821 27 6 11.3619 2.2281 -14.9358 28 6 10.7060 1.0808 -14.5178 29 6 9.0807 1.9481 -11.3944 30 8 8.7914 2.7116 -10.4953 31 6 8.6017 -1.2309 -9.9389 32 8 7.7214 -1.9655 -9.0827 33 6 3.1925 -0.6880 -3.2657 34 6 2.7269 -0.0376 -2.1395 35 1 -0.3933 0.4416 -0.7650 36 1 1.7924 -0.5139 0.8899 37 1 1.5615 2.4678 1.2085 38 1 3.5346 1.7703 -0.0321 39 1 0.9759 -2.5579 -0.7361 40 1 1.7940 -3.7216 -2.7450 41 1 3.5595 -1.0399 -5.8632 42 1 5.0133 -1.5544 -4.9743 43 1 6.1960 -4.0177 -8.3292 44 1 4.7426 -3.5041 -9.2192 45 1 6.8206 -1.1249 -12.0497 46 1 5.9714 0.3433 -11.5065 47 1 10.5331 4.3211 -12.4133 48 1 11.8149 4.2726 -14.5179 49 1 11.9263 2.2179 -15.8565 50 1 10.7583 0.1797 -15.1110 51 1 8.9338 -1.8709 -10.7563 52 1 9.4645 -0.8883 -9.3677 53 1 3.8170 -0.1632 -3.9736 54 1 2.9871 0.9963 -1.9670 There are 83 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 83 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479556_13594054.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:22:10 Heat of formation + Delta-G solvation = -193.894848 kcal Electronic energy + Delta-G solvation = -44087.941403 eV Core-core repulsion = 38117.664925 eV Total energy + Delta-G solvation = -5970.276478 eV No. of doubly occupied orbitals = 83 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 456.148 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.70727 -41.99033 -41.34744 -40.95754 -39.95051 -39.48825 -39.21895 -37.76049 -37.19790 -37.11024 -37.09729 -34.56702 -32.55381 -32.16147 -31.94751 -31.71662 -30.46528 -29.37186 -27.50441 -26.34951 -26.29520 -25.43185 -24.46445 -23.82169 -23.48577 -22.75614 -22.31249 -21.93564 -20.99790 -19.74086 -19.19222 -18.98662 -18.88595 -18.63222 -18.42158 -18.04429 -18.02453 -17.60156 -17.58749 -17.09514 -16.91438 -16.66063 -16.57713 -16.47333 -16.17744 -16.11500 -15.91157 -15.84870 -15.51463 -15.48455 -15.32763 -15.06387 -14.79411 -14.77604 -14.67877 -14.55982 -14.51926 -14.33666 -13.93404 -13.80310 -13.59192 -13.47287 -13.39278 -13.28022 -12.84133 -12.69258 -12.49074 -12.28599 -12.25356 -12.16627 -12.07575 -11.94068 -11.83313 -11.70455 -11.66294 -11.57190 -10.98081 -10.86474 -10.41318 -10.25779 -10.24462 -10.06266 -9.27410 -4.98823 -1.11097 -0.05981 0.24278 0.28845 0.86246 0.88883 0.89286 0.91742 1.34045 1.61788 1.64304 1.98221 2.16270 2.21725 2.35829 2.44585 2.57355 2.63540 3.07242 3.14453 3.22432 3.28628 3.44089 3.53747 3.55788 3.67770 3.69968 3.77456 3.81758 3.92590 3.93122 3.93824 3.97429 4.04277 4.04683 4.06087 4.14853 4.15907 4.20771 4.25877 4.28626 4.40304 4.42645 4.45415 4.50290 4.54521 4.64854 4.80457 4.87838 4.95546 5.06597 5.12857 5.18361 5.22910 5.25339 5.33718 5.40594 5.48097 5.65331 5.65415 5.69379 5.92258 6.19642 6.34881 6.48896 6.79835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.071 4.071 3 Si 0.778 3.222 4 C -0.158 4.158 5 C -0.060 4.060 6 C -0.160 4.160 7 C 0.121 3.879 8 O -0.319 6.319 9 C 0.066 3.934 10 C 0.468 3.532 11 O -0.524 6.524 12 O -0.336 6.336 13 C 0.082 3.918 14 C 0.241 3.759 15 H 0.108 0.892 16 O -0.382 6.382 17 C 0.051 3.949 18 C 0.076 3.924 19 H 0.122 0.878 20 N -0.569 5.569 21 C 0.576 3.424 22 O -0.481 6.481 23 C -0.160 4.160 24 C -0.159 4.159 25 C -0.044 4.044 26 C -0.084 4.084 27 C -0.085 4.085 28 C -0.043 4.043 29 C 0.577 3.423 30 O -0.487 6.487 31 C 0.050 3.950 32 O -0.383 6.383 33 C -0.200 4.200 34 C -0.077 4.077 35 H 0.395 0.605 36 H 0.105 0.895 37 H -0.302 1.302 38 H -0.283 1.283 39 H 0.136 0.864 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.074 0.926 46 H 0.117 0.883 47 H 0.154 0.846 48 H 0.175 0.825 49 H 0.175 0.825 50 H 0.155 0.845 51 H 0.074 0.926 52 H 0.115 0.885 53 H 0.162 0.838 54 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 7.515 -9.155 13.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.181 4.181 3 Si 0.684 3.316 4 C -0.159 4.159 5 C -0.078 4.078 6 C -0.179 4.179 7 C 0.076 3.924 8 O -0.233 6.233 9 C -0.009 4.009 10 C 0.311 3.689 11 O -0.413 6.413 12 O -0.252 6.252 13 C 0.009 3.991 14 C 0.147 3.853 15 H 0.125 0.875 16 O -0.302 6.302 17 C -0.026 4.026 18 C -0.026 4.026 19 H 0.140 0.860 20 N -0.313 5.313 21 C 0.368 3.632 22 O -0.354 6.354 23 C -0.163 4.163 24 C -0.163 4.163 25 C -0.063 4.063 26 C -0.102 4.102 27 C -0.102 4.102 28 C -0.062 4.062 29 C 0.368 3.632 30 O -0.359 6.359 31 C -0.027 4.027 32 O -0.303 6.303 33 C -0.219 4.219 34 C -0.094 4.094 35 H 0.245 0.755 36 H 0.122 0.878 37 H -0.230 1.230 38 H -0.210 1.210 39 H 0.154 0.846 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.092 0.908 46 H 0.135 0.865 47 H 0.171 0.829 48 H 0.193 0.807 49 H 0.193 0.807 50 H 0.173 0.827 51 H 0.093 0.907 52 H 0.133 0.867 53 H 0.179 0.821 54 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.911 6.955 -7.680 11.929 hybrid contribution 0.111 -1.069 0.155 1.086 sum 6.021 5.887 -7.525 11.293 Atomic orbital electron populations 1.86461 1.17393 1.82192 1.50517 1.25141 0.85192 1.10793 0.96966 0.93756 0.77804 0.75218 0.84829 1.20374 1.01794 0.95380 0.98327 1.20915 0.97160 0.93936 0.95750 1.20624 1.01132 1.01369 0.94781 1.19138 0.95013 0.91964 0.86262 1.86041 1.65142 1.40281 1.31861 1.22160 0.98477 0.92741 0.87516 1.23427 0.75262 0.86816 0.83419 1.90731 1.52827 1.20302 1.77436 1.86538 1.62614 1.44389 1.31703 1.23327 0.99693 0.91480 0.84644 1.23840 0.81510 0.87500 0.92480 0.87467 1.88225 1.39946 1.41502 1.60495 1.23032 0.91469 0.96911 0.91196 1.22585 0.91513 0.96608 0.91870 0.85968 1.46454 1.47953 1.13394 1.23528 1.18720 0.77919 0.86794 0.79787 1.90794 1.57620 1.17599 1.69379 1.20453 1.03265 0.93704 0.98898 1.20440 1.02939 0.97101 0.95780 1.21160 0.92498 0.96463 0.96186 1.21957 0.95821 1.00131 0.92278 1.21963 0.96463 0.91050 1.00767 1.21159 0.92130 1.00575 0.92310 1.18745 0.78360 0.80457 0.85617 1.90827 1.55387 1.52433 1.37287 1.23042 0.92759 0.91306 0.95560 1.88222 1.31372 1.72000 1.38663 1.21509 1.05603 0.93423 1.01328 1.21057 0.95512 1.00058 0.92792 0.75498 0.87801 1.23043 1.20986 0.84630 0.85141 0.84352 0.84752 0.87558 0.87460 0.90814 0.86535 0.82858 0.80724 0.80711 0.82714 0.90743 0.86651 0.82060 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.45 12.77 -148.98 -1.90 -2.35 16 2 C -0.07 0.01 2.82 71.24 0.20 0.21 16 3 Si 0.78 -1.82 29.78 68.60 2.04 0.23 16 4 C -0.16 -0.09 5.39 -19.85 -0.11 -0.20 16 5 C -0.06 -0.16 9.60 22.25 0.21 0.05 16 6 C -0.16 -0.72 9.99 22.37 0.22 -0.50 16 7 C 0.12 0.44 6.69 22.51 0.15 0.59 16 8 O -0.32 -1.88 9.67 -73.35 -0.71 -2.59 16 9 C 0.07 -0.05 5.33 71.24 0.38 0.33 16 10 C 0.47 2.56 8.03 71.24 0.57 3.13 16 11 O -0.52 -6.77 16.25 28.40 0.46 -6.31 16 12 O -0.34 -1.45 10.02 -45.12 -0.45 -1.90 16 13 C 0.08 0.15 5.55 71.98 0.40 0.55 16 14 C 0.24 0.38 3.59 71.98 0.26 0.64 16 15 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 16 O -0.38 -1.36 10.44 -122.14 -1.28 -2.63 16 17 C 0.05 0.06 6.33 72.07 0.46 0.52 16 18 C 0.08 0.13 3.07 45.16 0.14 0.27 16 19 H 0.12 0.40 7.60 -2.39 -0.02 0.38 16 20 N -0.57 -1.12 2.53 -739.56 -1.87 -2.99 16 21 C 0.58 1.21 7.35 86.82 0.64 1.85 16 22 O -0.48 -2.64 15.16 -3.52 -0.05 -2.69 16 23 C -0.16 0.23 6.40 -20.00 -0.13 0.10 16 24 C -0.16 0.15 6.41 -20.00 -0.13 0.02 16 25 C -0.04 0.27 10.09 22.44 0.23 0.50 16 26 C -0.08 0.92 10.04 22.36 0.22 1.15 16 27 C -0.08 0.94 10.04 22.36 0.22 1.17 16 28 C -0.04 0.28 10.09 22.44 0.23 0.51 16 29 C 0.58 1.99 8.02 86.82 0.70 2.69 16 30 O -0.49 -4.26 17.44 -3.56 -0.06 -4.32 16 31 C 0.05 0.07 6.32 72.07 0.46 0.53 16 32 O -0.38 -1.43 10.44 -122.14 -1.27 -2.71 16 33 C -0.20 0.28 9.04 22.36 0.20 0.49 16 34 C -0.08 0.14 8.66 22.25 0.19 0.34 16 35 H 0.40 -2.86 8.70 -74.06 -0.64 -3.51 16 36 H 0.10 0.14 7.96 -2.39 -0.02 0.12 16 37 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 38 H -0.28 -0.52 7.11 99.48 0.71 0.19 16 39 H 0.14 0.23 8.06 -2.91 -0.02 0.21 16 40 H 0.13 0.58 8.06 -2.91 -0.02 0.56 16 41 H 0.14 -0.91 7.67 -2.39 -0.02 -0.93 16 42 H 0.14 -0.81 7.65 -2.39 -0.02 -0.83 16 43 H 0.11 0.05 8.13 -2.39 -0.02 0.03 16 44 H 0.11 0.03 8.13 -2.39 -0.02 0.01 16 45 H 0.07 0.11 6.72 -2.39 -0.02 0.09 16 46 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 47 H 0.15 -1.28 8.06 -2.91 -0.02 -1.31 16 48 H 0.18 -2.94 8.06 -2.91 -0.02 -2.97 16 49 H 0.18 -2.98 8.06 -2.91 -0.02 -3.00 16 50 H 0.16 -1.42 8.06 -2.91 -0.02 -1.45 16 51 H 0.07 0.12 6.63 -2.39 -0.02 0.11 16 52 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 53 H 0.16 -1.22 6.30 -2.91 -0.02 -1.24 16 54 H 0.15 -1.00 4.87 -2.91 -0.01 -1.01 16 Total: 0.00 -30.30 460.71 1.01 -29.28 By element: Atomic # 1 Polarization: -16.31 SS G_CDS: 0.39 Total: -15.91 kcal Atomic # 6 Polarization: 9.20 SS G_CDS: 5.72 Total: 14.91 kcal Atomic # 7 Polarization: -1.12 SS G_CDS: -1.87 Total: -2.99 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -5.27 Total: -25.51 kcal Atomic # 14 Polarization: -1.82 SS G_CDS: 2.04 Total: 0.23 kcal Total: -30.30 1.01 -29.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_13594054.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.611 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds