Wall clock time and date at job start Sat Mar 6 2021 07:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.52997 * 109.47202 * 239.99470 * 2 1 3 5 5 O 1.42904 * 109.46790 * 119.99667 * 2 1 3 6 6 C 1.42895 * 113.99895 * 60.00170 * 5 2 1 7 7 H 1.08994 * 112.91148 * 18.74861 * 6 5 2 8 8 C 1.53787 * 113.61204 * 150.00156 * 6 5 2 9 9 C 1.53779 * 87.07963 * 139.97889 * 8 6 5 10 10 H 1.09001 * 113.61377 * 89.20020 * 9 8 6 11 11 C 1.52998 * 113.61250 * 220.01477 * 9 8 6 12 12 O 1.45197 * 109.47274 * 185.00131 * 11 9 8 13 13 C 1.34233 * 117.00226 * 180.02562 * 12 11 9 14 14 O 1.20829 * 119.99655 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99889 * 179.97438 * 13 12 11 16 16 O 1.42901 * 109.46642 * 180.02562 * 15 13 12 17 17 C 1.35902 * 116.99899 * 180.02562 * 16 15 13 18 18 C 1.38739 * 120.05441 * 359.72103 * 17 16 15 19 19 C 1.38148 * 119.94498 * 179.74437 * 18 17 16 20 20 C 1.38270 * 120.05152 * 0.51216 * 19 18 17 21 21 C 1.50702 * 119.94023 * 179.74413 * 20 19 18 22 22 O 1.42896 * 109.46751 * 245.02267 * 21 20 19 23 23 Si 1.86299 * 109.47286 * 5.02274 * 21 20 19 24 24 C 1.38264 * 120.11497 * 359.76549 * 20 19 18 25 25 C 1.38146 * 120.05492 * 359.97438 * 24 20 19 26 26 C 1.53779 * 87.08402 * 334.56577 * 9 8 6 27 27 H 1.08998 * 109.47657 * 300.00681 * 1 2 3 28 28 H 1.09010 * 109.46818 * 60.00243 * 1 2 3 29 29 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47375 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46932 * 300.00094 * 3 2 1 32 32 H 1.08998 * 109.47388 * 59.99154 * 3 2 1 33 33 H 1.08997 * 109.47278 * 300.00536 * 4 2 1 34 34 H 1.09001 * 109.47226 * 60.00508 * 4 2 1 35 35 H 1.08998 * 109.47119 * 179.97438 * 4 2 1 36 36 H 1.08997 * 113.61028 * 254.52849 * 8 6 5 37 37 H 1.08998 * 113.61447 * 25.34384 * 8 6 5 38 38 H 1.09007 * 109.47269 * 305.00322 * 11 9 8 39 39 H 1.08998 * 109.47235 * 64.99931 * 11 9 8 40 40 H 1.08999 * 109.47382 * 300.00244 * 15 13 12 41 41 H 1.08999 * 109.46924 * 60.00374 * 15 13 12 42 42 H 1.08001 * 120.02808 * 0.02562 * 18 17 16 43 43 H 1.07998 * 119.97216 * 180.23747 * 19 18 17 44 44 H 1.09002 * 109.46754 * 125.02536 * 21 20 19 45 45 H 0.96705 * 113.99903 * 179.97438 * 22 21 20 46 46 H 1.48491 * 109.99830 * 178.68178 * 23 21 20 47 47 H 1.48501 * 109.99842 * 300.00320 * 23 21 20 48 48 H 1.08000 * 119.97520 * 179.97438 * 24 20 19 49 49 H 1.07999 * 120.03297 * 179.97438 * 25 24 20 50 50 H 1.09002 * 113.61557 * 270.88569 * 26 9 8 51 51 H 1.09004 * 113.61501 * 139.97990 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0354 1.2646 7 1 1.2512 -2.4458 0.3115 8 6 2.5836 -2.9377 2.0081 9 6 1.3666 -3.6117 2.6634 10 1 0.9744 -4.4540 2.0933 11 6 1.5710 -3.9399 4.1437 12 8 0.4215 -4.6753 4.6396 13 6 0.4430 -5.0415 5.9309 14 8 1.3909 -4.7565 6.6239 15 6 -0.7155 -5.8070 6.5164 16 8 -0.4589 -6.0777 7.8959 17 6 -1.4121 -6.7663 8.5772 18 6 -2.5731 -7.1682 7.9327 19 6 -3.5382 -7.8727 8.6261 20 6 -3.3524 -8.1682 9.9640 21 6 -4.4094 -8.9318 10.7194 22 8 -4.9655 -8.0960 11.7363 23 14 -5.7551 -9.4581 9.5434 24 6 -2.1988 -7.7638 10.6101 25 6 -1.2284 -7.0637 9.9198 26 6 0.6075 -2.2961 2.4232 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6768 -0.2076 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 3.1476 -3.5992 1.3505 37 1 3.2180 -2.3993 2.7122 38 1 2.4688 -4.5470 4.2607 39 1 1.6819 -3.0147 4.7090 40 1 -1.6256 -5.2141 6.4260 41 1 -0.8391 -6.7468 5.9783 42 1 -2.7203 -6.9344 6.8887 43 1 -4.4404 -8.1890 8.1238 44 1 -3.9623 -9.8137 11.1782 45 1 -5.6546 -8.5233 12.2634 46 1 -6.7877 -10.2394 10.2702 47 1 -6.3726 -8.2646 8.9113 48 1 -2.0563 -7.9955 11.6553 49 1 -0.3276 -6.7477 10.4249 50 1 0.7007 -1.5825 3.2419 51 1 -0.4238 -2.4396 2.1007 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479556_14598394.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:52:34 Heat of formation + Delta-G solvation = -139.028196 kcal Electronic energy + Delta-G solvation = -29961.737342 eV Core-core repulsion = 25601.820293 eV Total energy + Delta-G solvation = -4359.917049 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 351.186 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94020 -41.19606 -40.74371 -39.19979 -38.52496 -37.48651 -37.22671 -33.91689 -32.54949 -31.87017 -30.77205 -29.12922 -28.34380 -28.23827 -26.64098 -26.22723 -24.34432 -23.64342 -22.54468 -21.88912 -20.86836 -20.60306 -19.68085 -18.58255 -18.45575 -18.21190 -18.08267 -17.62096 -16.84035 -16.80571 -16.73751 -16.44720 -15.93775 -15.73801 -15.67231 -15.37629 -14.83975 -14.63769 -14.52669 -14.46730 -14.13750 -14.01308 -13.95338 -13.59833 -13.49836 -13.45341 -13.31897 -13.15970 -12.99049 -12.79287 -12.65674 -12.49924 -12.43480 -12.27484 -12.20232 -11.98072 -11.89319 -11.83883 -11.70876 -11.49720 -11.34710 -11.18035 -10.46366 -10.35906 -10.04673 -9.27027 -4.90917 0.24335 0.29958 0.93397 0.94730 1.32788 1.62148 1.96538 2.37841 2.59748 2.73254 3.29287 3.43635 3.47633 3.55033 3.72854 3.75869 3.82121 3.83155 3.91994 3.94832 3.97315 3.98315 4.00534 4.08212 4.11926 4.18309 4.28335 4.34769 4.39560 4.45343 4.49070 4.63345 4.67136 4.68214 4.76841 4.77323 4.78889 4.84489 4.91661 4.94619 4.95848 5.00857 5.11761 5.13127 5.14468 5.21325 5.22958 5.32314 5.33896 5.39926 5.49765 5.65347 6.20979 6.42764 6.53006 6.60747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.140 4.140 4 C -0.176 4.176 5 O -0.383 6.383 6 C 0.060 3.940 7 H 0.106 0.894 8 C -0.127 4.127 9 C -0.099 4.099 10 H 0.123 0.877 11 C 0.078 3.922 12 O -0.344 6.344 13 C 0.465 3.535 14 O -0.530 6.530 15 C 0.065 3.935 16 O -0.321 6.321 17 C 0.121 3.879 18 C -0.199 4.199 19 C -0.079 4.079 20 C -0.121 4.121 21 C -0.085 4.085 22 O -0.560 6.560 23 Si 0.767 3.233 24 C -0.061 4.061 25 C -0.162 4.162 26 C -0.149 4.149 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.149 0.851 44 H 0.093 0.907 45 H 0.394 0.606 46 H -0.290 1.290 47 H -0.295 1.295 48 H 0.137 0.863 49 H 0.132 0.868 50 H 0.076 0.924 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.502 -4.100 -6.539 8.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.198 4.198 4 C -0.234 4.234 5 O -0.303 6.303 6 C 0.002 3.998 7 H 0.124 0.876 8 C -0.165 4.165 9 C -0.118 4.118 10 H 0.141 0.859 11 C 0.005 3.995 12 O -0.260 6.260 13 C 0.308 3.692 14 O -0.419 6.419 15 C -0.010 4.010 16 O -0.235 6.235 17 C 0.076 3.924 18 C -0.217 4.217 19 C -0.097 4.097 20 C -0.122 4.122 21 C -0.193 4.193 22 O -0.371 6.371 23 Si 0.673 3.327 24 C -0.079 4.079 25 C -0.180 4.180 26 C -0.187 4.187 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.154 0.846 41 H 0.161 0.839 42 H 0.184 0.816 43 H 0.166 0.834 44 H 0.111 0.889 45 H 0.244 0.756 46 H -0.217 1.217 47 H -0.223 1.223 48 H 0.155 0.845 49 H 0.150 0.850 50 H 0.095 0.905 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.296 -3.355 -6.609 8.112 hybrid contribution -0.238 0.504 1.366 1.475 sum -3.534 -2.852 -5.243 6.936 Atomic orbital electron populations 1.22440 0.94848 1.02857 1.02915 1.21683 0.93776 0.93288 0.85371 1.21801 1.01629 0.93444 1.02886 1.22444 1.01890 1.01240 0.97792 1.88023 1.74287 1.24228 1.43765 1.23686 0.95673 0.82302 0.98143 0.87597 1.23236 0.96378 0.97415 0.99449 1.22340 0.98608 0.98365 0.92449 0.85945 1.23238 0.86148 0.95373 0.94757 1.86428 1.46150 1.67599 1.25866 1.23497 0.87758 0.77177 0.80767 1.90736 1.36666 1.52833 1.61619 1.22227 0.94906 1.02824 0.81088 1.86048 1.43266 1.71153 1.23009 1.19117 0.88326 0.92980 0.91941 1.21496 0.93752 1.03943 1.02497 1.21054 0.99045 0.96149 0.93428 1.19455 0.95693 1.02644 0.94378 1.25013 1.02119 0.95516 0.96663 1.86554 1.58207 1.43457 1.48832 0.94176 0.76515 0.80151 0.81888 1.20948 0.91966 0.94966 1.00016 1.20628 1.01783 1.03452 0.92179 1.23613 0.99644 0.96182 0.99240 0.92589 0.90608 0.91741 0.92392 0.89728 0.92565 0.91541 0.90448 0.92288 0.89032 0.89846 0.90669 0.91645 0.84624 0.83901 0.81623 0.83357 0.88917 0.75580 1.21702 1.22252 0.84479 0.85045 0.90518 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.35 8.38 71.98 0.60 0.95 16 2 C 0.10 -0.01 1.11 -10.79 -0.01 -0.02 16 3 C -0.14 0.03 8.84 71.98 0.64 0.67 16 4 C -0.18 0.44 8.38 71.98 0.60 1.05 16 5 O -0.38 -1.34 10.00 -148.98 -1.49 -2.83 16 6 C 0.06 -0.07 2.82 31.12 0.09 0.02 16 7 H 0.11 -0.43 5.55 -2.39 -0.01 -0.45 16 8 C -0.13 0.27 7.47 31.12 0.23 0.50 16 9 C -0.10 0.30 4.02 -10.27 -0.04 0.25 16 10 H 0.12 -0.71 8.14 -2.39 -0.02 -0.73 16 11 C 0.08 0.08 5.30 71.98 0.38 0.46 16 12 O -0.34 -0.47 10.22 -51.45 -0.53 -1.00 16 13 C 0.46 2.06 8.03 71.24 0.57 2.63 16 14 O -0.53 -7.18 16.25 28.38 0.46 -6.72 16 15 C 0.06 -0.15 5.33 71.24 0.38 0.23 16 16 O -0.32 -1.78 9.67 -73.37 -0.71 -2.49 16 17 C 0.12 0.45 6.69 22.51 0.15 0.60 16 18 C -0.20 0.26 9.04 22.37 0.20 0.46 16 19 C -0.08 0.04 8.66 22.26 0.19 0.24 16 20 C -0.12 -0.25 5.38 -19.85 -0.11 -0.36 16 21 C -0.08 0.07 2.79 71.24 0.20 0.27 16 22 O -0.56 -1.33 12.81 -148.98 -1.91 -3.24 16 23 Si 0.77 -2.36 29.85 68.60 2.05 -0.32 16 24 C -0.06 -0.22 9.68 22.25 0.22 0.00 16 25 C -0.16 -0.81 9.99 22.37 0.22 -0.59 16 26 C -0.15 0.22 7.46 31.12 0.23 0.46 16 27 H 0.05 -0.01 8.14 -2.39 -0.02 -0.02 16 28 H 0.07 -0.30 8.14 -2.38 -0.02 -0.31 16 29 H 0.06 -0.20 7.02 -2.39 -0.02 -0.22 16 30 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.08 -0.28 8.14 -2.38 -0.02 -0.30 16 32 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 33 H 0.07 -0.26 6.25 -2.39 -0.01 -0.28 16 34 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 35 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 37 H 0.08 0.03 8.10 -2.39 -0.02 0.01 16 38 H 0.07 0.10 8.14 -2.38 -0.02 0.08 16 39 H 0.07 0.22 7.84 -2.39 -0.02 0.20 16 40 H 0.14 -1.07 7.65 -2.39 -0.02 -1.09 16 41 H 0.14 -1.30 7.67 -2.39 -0.02 -1.32 16 42 H 0.17 -1.42 6.30 -2.91 -0.02 -1.44 16 43 H 0.15 -0.72 4.86 -2.91 -0.01 -0.73 16 44 H 0.09 -0.42 7.96 -2.39 -0.02 -0.44 16 45 H 0.39 -2.22 8.74 -74.05 -0.65 -2.86 16 46 H -0.29 -0.43 7.11 99.48 0.71 0.27 16 47 H -0.29 -1.02 7.05 99.48 0.70 -0.32 16 48 H 0.14 0.22 8.06 -2.91 -0.02 0.20 16 49 H 0.13 0.61 8.06 -2.91 -0.02 0.59 16 50 H 0.08 0.13 7.90 -2.39 -0.02 0.11 16 51 H 0.08 -0.26 8.14 -2.39 -0.02 -0.28 16 Total: 0.00 -21.81 413.84 2.94 -18.87 By element: Atomic # 1 Polarization: -10.42 SS G_CDS: 0.31 Total: -10.11 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 4.75 Total: 7.82 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -4.17 Total: -16.27 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: 2.05 Total: -0.32 kcal Total: -21.81 2.94 -18.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_14598394.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.157 kcal (2) G-P(sol) polarization free energy of solvation -21.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds