Wall clock time and date at job start Sat Mar 6 2021 08:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45205 * 109.46911 * 119.99874 * 2 1 3 6 6 C 1.34636 * 116.99806 * 60.00322 * 5 2 1 7 7 O 1.21503 * 120.00147 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99531 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99665 * 179.72227 * 8 6 5 10 10 H 1.08998 * 112.85361 * 336.47110 * 9 8 6 11 11 C 1.53778 * 113.61557 * 107.77998 * 9 8 6 12 12 C 1.53780 * 87.08092 * 89.11527 * 11 9 8 13 13 H 1.09000 * 113.61877 * 270.88531 * 12 11 9 14 14 C 1.53008 * 113.69321 * 139.99401 * 12 11 9 15 15 O 1.45196 * 109.47009 * 87.46478 * 14 12 11 16 16 C 1.34231 * 116.99657 * 180.02562 * 15 14 12 17 17 O 1.20825 * 120.00379 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99895 * 180.02562 * 16 15 14 19 19 O 1.42895 * 109.47144 * 179.97438 * 18 16 15 20 20 C 1.35903 * 116.99853 * 179.97438 * 19 18 16 21 21 C 1.38726 * 120.05828 * 359.72762 * 20 19 18 22 22 C 1.38149 * 119.94628 * 179.74095 * 21 20 19 23 23 C 1.38261 * 120.05038 * 0.50746 * 22 21 20 24 24 C 1.50704 * 119.93955 * 179.74071 * 23 22 21 25 25 O 1.42906 * 109.46827 * 120.02716 * 24 23 22 26 26 Si 1.86293 * 109.47289 * 0.03011 * 24 23 22 27 27 C 1.38264 * 120.11903 * 359.76927 * 23 22 21 28 28 C 1.38148 * 120.05258 * 359.97438 * 27 23 22 29 29 C 1.53783 * 87.08328 * 25.43430 * 12 11 9 30 30 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 31 31 H 1.08996 * 109.47160 * 59.99677 * 1 2 3 32 32 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47127 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 35 35 H 1.08999 * 109.47210 * 60.00327 * 3 2 1 36 36 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 37 37 H 1.09001 * 109.46931 * 59.99857 * 4 2 1 38 38 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 40 40 H 1.08998 * 113.61596 * 203.65958 * 11 9 8 41 41 H 1.08998 * 113.61243 * 334.56847 * 11 9 8 42 42 H 1.08992 * 109.47046 * 207.46996 * 14 12 11 43 43 H 1.09007 * 109.46586 * 327.46200 * 14 12 11 44 44 H 1.09001 * 109.46573 * 299.99754 * 18 16 15 45 45 H 1.09000 * 109.47497 * 59.99170 * 18 16 15 46 46 H 1.08000 * 120.02834 * 359.97438 * 21 20 19 47 47 H 1.07996 * 119.97036 * 180.23571 * 22 21 20 48 48 H 1.08997 * 109.47649 * 240.02293 * 24 23 22 49 49 H 0.96697 * 114.00156 * 180.02562 * 25 24 23 50 50 H 1.48504 * 109.99847 * 298.67313 * 26 24 23 51 51 H 1.48495 * 110.00217 * 59.99440 * 26 24 23 52 52 H 1.07997 * 119.97783 * 179.97438 * 27 23 22 53 53 H 1.07998 * 120.03246 * 180.02562 * 28 27 23 54 54 H 1.09000 * 113.61551 * 220.02042 * 29 12 11 55 55 H 1.09004 * 113.69000 * 89.12178 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6694 -4.0652 2.5860 10 1 0.7552 -4.3131 2.0468 11 6 2.8147 -5.0645 2.3525 12 6 3.1400 -4.9206 3.8486 13 1 3.8387 -4.1132 4.0679 14 6 3.5247 -6.2387 4.5237 15 8 4.9523 -6.4589 4.3773 16 6 5.4545 -7.5803 4.9178 17 8 4.7254 -8.3521 5.4945 18 6 6.9280 -7.8761 4.8062 19 8 7.2153 -9.1163 5.4554 20 6 8.5090 -9.5325 5.4457 21 6 9.4808 -8.7661 4.8192 22 6 10.7961 -9.1888 4.8154 23 6 11.1423 -10.3799 5.4261 24 6 12.5769 -10.8415 5.4153 25 8 13.0459 -10.9702 6.7591 26 14 13.6236 -9.5950 4.5091 27 6 10.1747 -11.1485 6.0462 28 6 8.8589 -10.7276 6.0574 29 6 1.6660 -4.5318 4.0513 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6766 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 2.6276 -2.2368 3.0830 40 1 2.4741 -6.0616 2.0738 41 1 3.5983 -4.6850 1.6968 42 1 3.2709 -6.1921 5.5826 43 1 2.9805 -7.0590 4.0555 44 1 7.2064 -7.9431 3.7545 45 1 7.4961 -7.0770 5.2823 46 1 9.2101 -7.8378 4.3382 47 1 11.5536 -8.5905 4.3311 48 1 12.6444 -11.8064 4.9130 49 1 13.9645 -11.2641 6.8286 50 1 13.1662 -9.4753 3.1013 51 1 13.5401 -8.2750 5.1842 52 1 10.4476 -12.0787 6.5222 53 1 8.1035 -11.3281 6.5423 54 1 1.5224 -3.7223 4.7670 55 1 1.0103 -5.3825 4.2372 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479556_15734084.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:17:23 Heat of formation + Delta-G solvation = -170.666606 kcal Electronic energy + Delta-G solvation = -35521.518560 eV Core-core repulsion = 30492.357705 eV Total energy + Delta-G solvation = -5029.160856 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.08813 -41.89738 -41.23565 -40.38395 -39.20983 -38.07051 -37.53095 -37.17685 -35.40076 -34.15053 -32.67880 -31.97424 -30.80211 -29.10454 -28.40094 -28.33155 -26.79825 -26.27518 -24.84556 -24.20891 -23.21595 -22.62240 -21.96188 -21.20190 -20.35226 -19.81338 -19.36807 -18.59390 -18.36529 -18.20951 -18.08194 -17.63044 -17.24928 -16.98669 -16.79303 -16.76976 -16.54074 -15.94285 -15.76219 -15.58880 -15.46418 -15.28161 -15.21697 -14.79152 -14.57659 -14.50894 -14.20683 -13.98115 -13.84739 -13.68833 -13.57056 -13.49219 -13.39572 -13.30794 -13.09594 -12.95240 -12.90068 -12.56445 -12.54802 -12.36966 -12.30471 -12.21869 -12.06736 -11.99978 -11.89600 -11.84534 -11.52738 -11.43057 -11.25723 -11.16071 -10.30185 -10.24028 -10.19827 -9.37149 -4.92533 0.09379 0.14866 0.87820 0.88894 1.08587 1.32400 1.65216 1.68263 1.97107 2.30484 2.48515 3.06398 3.22187 3.33533 3.40478 3.46853 3.55936 3.70276 3.71084 3.71541 3.77044 3.80583 3.85986 3.86184 3.91159 3.94626 4.11774 4.14072 4.28448 4.30378 4.35213 4.40493 4.44027 4.57359 4.58095 4.58211 4.68757 4.70268 4.73374 4.79355 4.79516 4.84602 4.85522 4.90442 4.97770 5.00789 5.01481 5.06154 5.11360 5.20287 5.23886 5.28833 5.35352 5.43476 5.52266 5.57356 6.07820 6.33553 6.48357 6.92830 7.28938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.683 5.683 9 C 0.131 3.869 10 H 0.096 0.904 11 C -0.146 4.146 12 C -0.102 4.102 13 H 0.114 0.886 14 C 0.073 3.927 15 O -0.347 6.347 16 C 0.468 3.532 17 O -0.525 6.525 18 C 0.062 3.938 19 O -0.315 6.315 20 C 0.122 3.878 21 C -0.201 4.201 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.076 4.076 25 O -0.565 6.565 26 Si 0.771 3.229 27 C -0.055 4.055 28 C -0.155 4.155 29 C -0.121 4.121 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.417 0.583 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.160 0.840 47 H 0.125 0.875 48 H 0.094 0.906 49 H 0.403 0.597 50 H -0.286 1.286 51 H -0.297 1.297 52 H 0.148 0.852 53 H 0.140 0.860 54 H 0.096 0.904 55 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.606 2.559 -0.884 6.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.283 6.283 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.342 5.342 9 C 0.027 3.973 10 H 0.114 0.886 11 C -0.184 4.184 12 C -0.120 4.120 13 H 0.132 0.868 14 C 0.000 4.000 15 O -0.263 6.263 16 C 0.311 3.689 17 O -0.414 6.414 18 C -0.013 4.013 19 O -0.230 6.230 20 C 0.077 3.923 21 C -0.219 4.219 22 C -0.117 4.117 23 C -0.127 4.127 24 C -0.186 4.186 25 O -0.375 6.375 26 Si 0.677 3.323 27 C -0.073 4.073 28 C -0.174 4.174 29 C -0.159 4.159 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.178 0.822 47 H 0.143 0.857 48 H 0.112 0.888 49 H 0.254 0.746 50 H -0.213 1.213 51 H -0.224 1.224 52 H 0.166 0.834 53 H 0.158 0.842 54 H 0.114 0.886 55 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.238 3.023 -1.402 5.391 hybrid contribution -0.610 -0.074 0.269 0.671 sum 3.628 2.949 -1.133 4.811 Atomic orbital electron populations 1.22480 0.94029 1.03712 1.03564 1.22355 0.94466 0.92571 0.81454 1.21896 1.02474 0.90849 1.04281 1.22475 1.01639 1.02239 0.97392 1.86312 1.71514 1.23207 1.47304 1.18314 0.78537 0.80733 0.82457 1.90909 1.42221 1.71052 1.44161 1.44350 1.54849 1.11861 1.23187 1.21810 0.98620 0.78259 0.98640 0.88565 1.23575 0.98392 1.00217 0.96261 1.22684 0.97868 0.95997 0.95471 0.86826 1.23371 0.75832 0.98599 1.02196 1.86440 1.28624 1.40106 1.71147 1.23284 0.91334 0.79160 0.75141 1.90734 1.61690 1.48566 1.40383 1.22201 0.89524 0.87355 1.02238 1.86051 1.24680 1.38410 1.73810 1.19073 0.82130 0.94465 0.96604 1.21407 0.92761 1.02671 1.05062 1.20863 0.96286 0.95405 0.99147 1.19700 0.95592 0.95827 1.01562 1.24783 0.94809 1.08845 0.90147 1.86440 1.35193 1.91434 1.24456 0.94323 0.87123 0.75965 0.74846 1.21013 0.90620 0.99885 0.95787 1.20739 0.97544 0.95767 1.03304 1.23341 0.94822 1.02838 0.94920 0.91879 0.89462 0.91781 0.91161 0.88310 0.91134 0.91813 0.89465 0.91933 0.74534 0.88206 0.91267 0.90378 0.90630 0.84742 0.84766 0.82233 0.85747 0.88848 0.74579 1.21336 1.22435 0.83437 0.84171 0.88589 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 3 C -0.14 0.34 8.85 71.98 0.64 0.97 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 5 O -0.37 -1.80 9.94 -55.45 -0.55 -2.36 16 6 C 0.65 3.89 8.06 129.79 1.05 4.93 16 7 O -0.59 -6.87 11.48 19.83 0.23 -6.64 16 8 N -0.68 0.48 5.27 -567.62 -2.99 -2.51 16 9 C 0.13 -0.31 4.33 45.52 0.20 -0.11 16 10 H 0.10 0.13 7.46 -2.39 -0.02 0.11 16 11 C -0.15 0.48 7.43 31.12 0.23 0.71 16 12 C -0.10 0.59 3.89 -10.26 -0.04 0.55 16 13 H 0.11 -0.81 8.14 -2.39 -0.02 -0.83 16 14 C 0.07 -0.15 5.31 71.98 0.38 0.23 16 15 O -0.35 -0.13 10.22 -51.43 -0.53 -0.65 16 16 C 0.47 1.82 8.03 71.24 0.57 2.39 16 17 O -0.53 -6.39 16.25 28.40 0.46 -5.93 16 18 C 0.06 -0.07 5.33 71.24 0.38 0.31 16 19 O -0.32 -1.98 9.67 -73.38 -0.71 -2.69 16 20 C 0.12 0.65 6.69 22.51 0.15 0.80 16 21 C -0.20 -0.45 9.04 22.37 0.20 -0.25 16 22 C -0.10 -0.40 8.66 22.25 0.19 -0.21 16 23 C -0.13 -0.54 5.42 -19.85 -0.11 -0.65 16 24 C -0.08 0.08 2.81 71.24 0.20 0.28 16 25 O -0.57 0.39 12.74 -148.98 -1.90 -1.51 16 26 Si 0.77 -2.21 29.78 68.60 2.04 -0.16 16 27 C -0.06 -0.24 9.60 22.25 0.21 -0.02 16 28 C -0.16 -0.86 9.99 22.37 0.22 -0.63 16 29 C -0.12 0.88 7.39 31.12 0.23 1.11 16 30 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 33 H 0.07 -0.19 8.14 -2.38 -0.02 -0.21 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 37 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 39 H 0.42 -2.21 8.81 -92.71 -0.82 -3.03 16 40 H 0.10 -0.37 7.90 -2.39 -0.02 -0.39 16 41 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.08 -0.15 8.13 -2.39 -0.02 -0.17 16 43 H 0.08 -0.10 7.84 -2.38 -0.02 -0.12 16 44 H 0.14 -0.90 7.65 -2.39 -0.02 -0.92 16 45 H 0.13 -0.89 7.68 -2.39 -0.02 -0.91 16 46 H 0.16 -0.70 6.30 -2.91 -0.02 -0.72 16 47 H 0.13 0.32 4.87 -2.91 -0.01 0.30 16 48 H 0.09 -0.47 7.96 -2.39 -0.02 -0.49 16 49 H 0.40 -4.51 8.74 -74.06 -0.65 -5.16 16 50 H -0.29 -0.59 7.11 99.48 0.71 0.12 16 51 H -0.30 -1.36 7.11 99.48 0.71 -0.65 16 52 H 0.15 0.18 8.06 -2.91 -0.02 0.15 16 53 H 0.14 0.57 8.06 -2.91 -0.02 0.54 16 54 H 0.10 -0.85 8.14 -2.39 -0.02 -0.87 16 55 H 0.11 -0.98 8.10 -2.38 -0.02 -1.00 16 Total: 0.00 -26.99 449.01 1.46 -25.53 By element: Atomic # 1 Polarization: -13.44 SS G_CDS: -0.50 Total: -13.95 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 5.90 Total: 10.86 kcal Atomic # 7 Polarization: 0.48 SS G_CDS: -2.99 Total: -2.51 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -3.00 Total: -19.77 kcal Atomic # 14 Polarization: -2.21 SS G_CDS: 2.04 Total: -0.16 kcal Total: -26.99 1.46 -25.53 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_15734084.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.136 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds