Wall clock time and date at job start Sat Mar 6 2021 08:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47103 * 2 1 4 4 C 1.53002 * 109.47497 * 240.00350 * 2 1 3 5 5 O 1.45195 * 109.47224 * 120.00099 * 2 1 3 6 6 C 1.34638 * 117.00135 * 60.00489 * 5 2 1 7 7 O 1.21513 * 119.99867 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00235 * 180.02562 * 6 5 2 9 9 C 1.46498 * 119.99828 * 180.27525 * 8 6 5 10 10 H 1.09002 * 112.85022 * 335.91707 * 9 8 6 11 11 C 1.53782 * 113.61718 * 107.22525 * 9 8 6 12 12 C 1.53783 * 87.08212 * 139.98032 * 11 9 8 13 13 H 1.08997 * 113.69029 * 89.12922 * 12 11 9 14 14 C 1.53003 * 113.61122 * 220.02111 * 12 11 9 15 15 O 1.45200 * 109.46763 * 272.49448 * 14 12 11 16 16 C 1.34227 * 116.99652 * 180.02562 * 15 14 12 17 17 O 1.20825 * 120.00344 * 0.02562 * 16 15 14 18 18 C 1.50704 * 120.00334 * 180.02562 * 16 15 14 19 19 O 1.42894 * 109.47467 * 179.97438 * 18 16 15 20 20 C 1.35900 * 117.00033 * 179.97438 * 19 18 16 21 21 C 1.38735 * 120.05500 * 359.73007 * 20 19 18 22 22 C 1.38145 * 119.94561 * 179.74064 * 21 20 19 23 23 C 1.38267 * 120.05058 * 0.50983 * 22 21 20 24 24 C 1.50709 * 119.93980 * 179.74293 * 23 22 21 25 25 O 1.42894 * 109.46934 * 245.02247 * 24 23 22 26 26 Si 1.86301 * 109.47297 * 5.02422 * 24 23 22 27 27 C 1.38261 * 120.11405 * 359.76715 * 23 22 21 28 28 C 1.38135 * 120.05528 * 359.97438 * 27 23 22 29 29 C 1.53781 * 113.61158 * 204.72374 * 9 8 6 30 30 H 1.09001 * 109.47095 * 299.99865 * 1 2 3 31 31 H 1.09006 * 109.47298 * 59.99979 * 1 2 3 32 32 H 1.09003 * 109.46856 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47042 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.47205 * 300.00164 * 3 2 1 35 35 H 1.09001 * 109.46587 * 60.00389 * 3 2 1 36 36 H 1.09003 * 109.46840 * 300.00288 * 4 2 1 37 37 H 1.09006 * 109.47115 * 59.99560 * 4 2 1 38 38 H 1.08995 * 109.47291 * 179.97438 * 4 2 1 39 39 H 0.97001 * 119.99727 * 359.97438 * 8 6 5 40 40 H 1.09002 * 113.61513 * 254.52730 * 11 9 8 41 41 H 1.08999 * 113.61337 * 25.42719 * 11 9 8 42 42 H 1.09002 * 109.47288 * 32.49672 * 14 12 11 43 43 H 1.08999 * 109.46924 * 152.49697 * 14 12 11 44 44 H 1.08996 * 109.46717 * 300.00499 * 18 16 15 45 45 H 1.09004 * 109.47070 * 59.99379 * 18 16 15 46 46 H 1.08004 * 120.02696 * 359.97438 * 21 20 19 47 47 H 1.07994 * 119.97298 * 180.23320 * 22 21 20 48 48 H 1.09003 * 109.46757 * 125.02195 * 24 23 22 49 49 H 0.96696 * 114.00375 * 60.00251 * 25 24 23 50 50 H 1.48493 * 109.99820 * 180.02562 * 26 24 23 51 51 H 1.48500 * 109.99789 * 301.31587 * 26 24 23 52 52 H 1.08008 * 119.97241 * 179.97438 * 27 23 22 53 53 H 1.08010 * 120.03031 * 179.97438 * 28 27 23 54 54 H 1.09001 * 113.61403 * 334.56380 * 29 9 8 55 55 H 1.09001 * 113.61847 * 105.47026 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0673 -2.6655 2.4170 9 6 1.6788 -4.0686 2.5801 10 1 0.7643 -4.3197 2.0427 11 6 2.8299 -5.0589 2.3373 12 6 2.2861 -5.8620 3.5306 13 1 1.5384 -6.6053 3.2540 14 6 3.3804 -6.4290 4.4374 15 8 3.8009 -7.7252 3.9360 16 6 4.7617 -8.3620 4.6237 17 8 5.2354 -7.8534 5.6121 18 6 5.2499 -9.7113 4.1631 19 8 6.2662 -10.1792 5.0519 20 6 6.8161 -11.3912 4.7771 21 6 6.3823 -12.1178 3.6778 22 6 6.9466 -13.3472 3.3974 23 6 7.9356 -13.8583 4.2175 24 6 8.5454 -15.2023 3.9126 25 8 8.2243 -16.1197 4.9601 26 14 7.8674 -15.8403 2.2989 27 6 8.3656 -13.1386 5.3170 28 6 7.8083 -11.9065 5.5985 29 6 1.6837 -4.5430 4.0429 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2073 -2.1393 38 1 3.1300 -0.7207 -1.2495 39 1 2.6269 -2.2366 3.0832 40 1 2.7583 -5.5871 1.3865 41 1 3.8174 -4.6318 2.5120 42 1 4.2324 -5.7493 4.4472 43 1 2.9920 -6.5396 5.4498 44 1 4.4184 -10.4161 4.1581 45 1 5.6592 -9.6254 3.1565 46 1 5.6067 -11.7210 3.0395 47 1 6.6119 -13.9115 2.5397 48 1 9.6281 -15.1013 3.8373 49 1 7.2754 -16.2585 5.0843 50 1 8.4606 -17.1655 1.9873 51 1 6.3888 -15.9522 2.3781 52 1 9.1380 -13.5402 5.9563 53 1 8.1442 -11.3448 6.4577 54 1 2.3579 -3.9750 4.6839 55 1 0.6867 -4.6549 4.4690 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479556_15734238.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:17:27 Heat of formation + Delta-G solvation = -173.916563 kcal Electronic energy + Delta-G solvation = -35339.790956 eV Core-core repulsion = 30310.489171 eV Total energy + Delta-G solvation = -5029.301784 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.99827 -41.82376 -41.14536 -40.27745 -39.22986 -38.06952 -37.51420 -37.18651 -35.41429 -34.25025 -32.49055 -31.80584 -30.70369 -29.00435 -28.38015 -28.31606 -26.76292 -26.27992 -24.90160 -24.09702 -22.78486 -22.37455 -21.95720 -21.41459 -20.54259 -19.69443 -19.13619 -18.52943 -18.46167 -18.12607 -18.01086 -17.56253 -17.19514 -16.90355 -16.75483 -16.52782 -16.25786 -16.17010 -15.96621 -15.57639 -15.50392 -15.39892 -14.79015 -14.72525 -14.59878 -14.44898 -14.34412 -13.83206 -13.71079 -13.52859 -13.49522 -13.42920 -13.37457 -13.18421 -13.00902 -12.90636 -12.88070 -12.55145 -12.47182 -12.33717 -12.26179 -12.15313 -12.13361 -12.00074 -11.84119 -11.63961 -11.47660 -11.40625 -11.29634 -11.11519 -10.57640 -10.16723 -10.04274 -9.27937 -4.89948 0.25395 0.30407 0.94683 0.96490 1.18791 1.34230 1.61012 1.72038 1.98911 2.40876 2.63620 3.12065 3.29342 3.38406 3.45846 3.52847 3.70879 3.72450 3.73125 3.78125 3.79082 3.84743 3.92754 3.93135 3.98174 4.00208 4.14951 4.23493 4.29962 4.37673 4.42591 4.49724 4.55094 4.59909 4.61567 4.69025 4.69726 4.75138 4.76290 4.78232 4.84955 4.86212 4.94430 4.97065 5.01668 5.06079 5.14189 5.16026 5.23950 5.25277 5.25742 5.31695 5.49068 5.49434 5.58467 5.66873 6.22006 6.38341 6.51527 6.55711 7.32512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.691 5.691 9 C 0.135 3.865 10 H 0.109 0.891 11 C -0.146 4.146 12 C -0.098 4.098 13 H 0.118 0.882 14 C 0.077 3.923 15 O -0.346 6.346 16 C 0.466 3.534 17 O -0.528 6.528 18 C 0.063 3.937 19 O -0.321 6.321 20 C 0.122 3.878 21 C -0.200 4.200 22 C -0.078 4.078 23 C -0.155 4.155 24 C -0.081 4.081 25 O -0.551 6.551 26 Si 0.769 3.231 27 C -0.059 4.059 28 C -0.162 4.162 29 C -0.123 4.123 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.417 0.583 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.164 0.836 47 H 0.151 0.849 48 H 0.122 0.878 49 H 0.386 0.614 50 H -0.308 1.308 51 H -0.277 1.277 52 H 0.136 0.864 53 H 0.130 0.870 54 H 0.105 0.895 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 2.165 -3.447 4.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.350 5.350 9 C 0.031 3.969 10 H 0.127 0.873 11 C -0.185 4.185 12 C -0.117 4.117 13 H 0.136 0.864 14 C 0.003 3.997 15 O -0.262 6.262 16 C 0.309 3.691 17 O -0.417 6.417 18 C -0.012 4.012 19 O -0.235 6.235 20 C 0.077 3.923 21 C -0.218 4.218 22 C -0.095 4.095 23 C -0.156 4.156 24 C -0.190 4.190 25 O -0.359 6.359 26 Si 0.674 3.326 27 C -0.078 4.078 28 C -0.180 4.180 29 C -0.161 4.161 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.254 0.746 40 H 0.092 0.908 41 H 0.109 0.891 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.182 0.818 47 H 0.168 0.832 48 H 0.140 0.860 49 H 0.235 0.765 50 H -0.236 1.236 51 H -0.204 1.204 52 H 0.153 0.847 53 H 0.148 0.852 54 H 0.124 0.876 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.600 1.689 -3.796 4.453 hybrid contribution -0.316 -0.122 1.458 1.497 sum -1.916 1.567 -2.339 3.405 Atomic orbital electron populations 1.22478 0.94019 1.03737 1.03508 1.22341 0.94467 0.92542 0.81534 1.21896 1.02438 0.90969 1.04240 1.22473 1.01603 1.02286 0.97353 1.86314 1.71547 1.23417 1.47263 1.18435 0.78582 0.80685 0.82647 1.90901 1.42286 1.71040 1.44232 1.44788 1.54930 1.12262 1.23004 1.22571 0.99025 0.77037 0.98276 0.87265 1.23626 0.98964 0.96704 0.99195 1.22337 0.97153 0.96478 0.95716 0.86436 1.23285 0.97745 0.80227 0.98402 1.86439 1.51243 1.34455 1.54113 1.23418 0.77068 0.87581 0.81006 1.90735 1.56291 1.67672 1.27000 1.22221 0.93200 0.90690 0.95059 1.86046 1.52272 1.33237 1.51930 1.19130 0.93827 0.84151 0.95144 1.21512 1.04646 0.96843 0.98790 1.21096 0.94509 0.95310 0.98619 1.20286 0.99762 0.97901 0.97645 1.25208 1.05538 0.87450 1.00760 1.86574 1.30514 1.64299 1.54519 0.94113 0.77415 0.81538 0.79508 1.20933 0.98317 0.92294 0.96208 1.20625 0.98446 0.97463 1.01504 1.23373 1.03438 0.94268 0.95045 0.91951 0.89492 0.91700 0.91226 0.88325 0.91201 0.91710 0.89489 0.91996 0.74602 0.90757 0.89064 0.90711 0.90420 0.84509 0.84307 0.81849 0.83191 0.86028 0.76517 1.23634 1.20381 0.84654 0.85228 0.87639 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.11 16 2 C 0.13 0.32 1.13 -10.79 -0.01 0.31 16 3 C -0.14 0.32 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.83 9.94 -55.48 -0.55 -2.38 16 6 C 0.64 3.70 8.06 129.79 1.05 4.74 16 7 O -0.59 -6.50 11.48 19.80 0.23 -6.28 16 8 N -0.69 0.69 5.36 -567.60 -3.04 -2.35 16 9 C 0.13 -0.44 4.24 45.52 0.19 -0.25 16 10 H 0.11 -0.01 7.47 -2.39 -0.02 -0.02 16 11 C -0.15 0.65 7.43 31.12 0.23 0.88 16 12 C -0.10 0.64 4.02 -10.26 -0.04 0.60 16 13 H 0.12 -0.87 8.14 -2.39 -0.02 -0.89 16 14 C 0.08 -0.25 5.30 71.98 0.38 0.13 16 15 O -0.35 0.45 10.22 -51.39 -0.53 -0.08 16 16 C 0.47 0.90 8.03 71.24 0.57 1.47 16 17 O -0.53 -5.61 16.25 28.40 0.46 -5.15 16 18 C 0.06 -0.26 5.33 71.24 0.38 0.12 16 19 O -0.32 -1.14 9.67 -73.34 -0.71 -1.85 16 20 C 0.12 0.19 6.69 22.51 0.15 0.34 16 21 C -0.20 0.73 9.04 22.37 0.20 0.93 16 22 C -0.08 0.28 8.66 22.25 0.19 0.47 16 23 C -0.16 0.15 5.35 -19.85 -0.11 0.04 16 24 C -0.08 0.12 2.80 71.24 0.20 0.32 16 25 O -0.55 -1.20 12.83 -148.98 -1.91 -3.11 16 26 Si 0.77 -2.61 29.88 68.60 2.05 -0.56 16 27 C -0.06 -0.07 9.68 22.25 0.22 0.14 16 28 C -0.16 -0.46 9.99 22.36 0.22 -0.24 16 29 C -0.12 0.98 7.39 31.12 0.23 1.21 16 30 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.09 -0.06 8.14 -2.38 -0.02 -0.07 16 32 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 37 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 38 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.42 -2.25 8.84 -92.71 -0.82 -3.07 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.09 -0.42 7.90 -2.39 -0.02 -0.44 16 42 H 0.07 -0.21 7.84 -2.39 -0.02 -0.22 16 43 H 0.08 -0.23 8.13 -2.39 -0.02 -0.25 16 44 H 0.14 -1.37 7.65 -2.39 -0.02 -1.39 16 45 H 0.14 -1.41 7.68 -2.39 -0.02 -1.43 16 46 H 0.16 -1.69 6.30 -2.91 -0.02 -1.71 16 47 H 0.15 -1.18 4.83 -2.91 -0.01 -1.19 16 48 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 49 H 0.39 -1.34 8.70 -74.06 -0.64 -1.99 16 50 H -0.31 -1.58 7.11 99.48 0.71 -0.87 16 51 H -0.28 0.17 7.00 99.48 0.70 0.87 16 52 H 0.14 0.02 8.06 -2.91 -0.02 -0.01 16 53 H 0.13 0.38 8.06 -2.91 -0.02 0.36 16 54 H 0.11 -1.05 8.08 -2.39 -0.02 -1.07 16 55 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 Total: 0.00 -25.39 449.14 1.39 -24.00 By element: Atomic # 1 Polarization: -14.13 SS G_CDS: -0.51 Total: -14.64 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.90 Total: 12.39 kcal Atomic # 7 Polarization: 0.69 SS G_CDS: -3.04 Total: -2.35 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -3.01 Total: -18.85 kcal Atomic # 14 Polarization: -2.61 SS G_CDS: 2.05 Total: -0.56 kcal Total: -25.39 1.39 -24.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_15734238.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.914 kcal (2) G-P(sol) polarization free energy of solvation -25.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds