Wall clock time and date at job start Sat Mar 6 2021 08:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86289 * 109.47570 * 2 1 4 4 C 1.50705 * 109.46728 * 120.00313 * 2 1 3 5 5 C 1.38270 * 119.93813 * 245.27253 * 4 2 1 6 6 C 1.38147 * 120.05177 * 180.24023 * 5 4 2 7 7 C 1.38736 * 119.94540 * 359.46077 * 6 5 4 8 8 O 1.35892 * 120.05957 * 180.26040 * 7 6 5 9 9 C 1.42899 * 117.00396 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.47210 * 179.97438 * 9 8 7 11 11 O 1.20818 * 120.00045 * 359.97438 * 10 9 8 12 12 O 1.34233 * 119.99830 * 180.02562 * 10 9 8 13 13 C 1.45197 * 116.99870 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46905 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47258 * 304.99400 * 14 13 12 16 16 C 1.53003 * 109.47504 * 65.00000 * 14 13 12 17 17 C 1.52995 * 109.47029 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47503 * 299.99609 * 17 16 14 19 19 H 1.08996 * 109.47006 * 300.00646 * 18 17 16 20 20 O 1.42900 * 109.47109 * 180.02562 * 18 17 16 21 21 C 1.53003 * 109.46659 * 60.00164 * 18 17 16 22 22 C 1.52995 * 109.47370 * 300.00291 * 21 18 17 23 23 C 1.38740 * 119.88595 * 0.28283 * 7 6 5 24 24 C 1.38146 * 119.94197 * 359.97438 * 23 7 6 25 25 H 0.96703 * 113.99810 * 299.99988 * 1 2 3 26 26 H 1.08997 * 109.46673 * 239.99524 * 2 1 3 27 27 H 1.48495 * 110.00197 * 178.67982 * 3 2 1 28 28 H 1.48498 * 110.00176 * 300.00193 * 3 2 1 29 29 H 1.07995 * 119.98059 * 359.97438 * 5 4 2 30 30 H 1.08002 * 120.03108 * 179.74549 * 6 5 4 31 31 H 1.08997 * 109.47463 * 300.00468 * 9 8 7 32 32 H 1.09002 * 109.46662 * 59.99805 * 9 8 7 33 33 H 1.08996 * 109.47264 * 299.99179 * 13 12 10 34 34 H 1.09001 * 109.47362 * 60.00116 * 13 12 10 35 35 H 1.09002 * 109.46690 * 300.00142 * 16 14 13 36 36 H 1.08996 * 109.47019 * 59.99492 * 16 14 13 37 37 H 1.09008 * 109.46579 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.47205 * 60.00564 * 17 16 14 39 39 H 0.96699 * 113.99686 * 60.00748 * 20 18 17 40 40 H 1.09002 * 109.46690 * 179.97438 * 21 18 17 41 41 H 1.09002 * 109.46616 * 60.00447 * 21 18 17 42 42 H 1.09010 * 109.46761 * 299.99782 * 22 21 18 43 43 H 1.08999 * 109.47082 * 180.02562 * 22 21 18 44 44 H 1.07993 * 120.02463 * 180.02562 * 23 7 6 45 45 H 1.08006 * 119.96944 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7563 0.0000 4 6 1.9312 -0.7105 1.2305 5 6 2.6338 -0.0098 2.1935 6 6 3.0995 -0.6598 3.3200 7 6 2.8522 -2.0144 3.4899 8 8 3.3047 -2.6549 4.5997 9 6 3.0137 -4.0498 4.7078 10 6 3.5904 -4.5852 5.9930 11 8 4.1896 -3.8481 6.7395 12 8 3.4392 -5.8813 6.3078 13 6 4.0203 -6.3272 7.5615 14 6 3.7474 -7.8211 7.7472 15 1 2.6757 -8.0065 7.6747 16 6 4.4766 -8.6120 6.6592 17 6 4.2041 -10.1060 6.8454 18 6 4.7067 -10.5486 8.2210 19 1 5.7783 -10.3628 8.2933 20 8 4.4528 -11.9441 8.3946 21 6 3.9776 -9.7577 9.3090 22 6 4.2500 -8.2637 9.1229 23 6 2.1425 -2.7139 2.5247 24 6 1.6835 -2.0604 1.3975 25 1 -0.3933 0.4417 0.7651 26 1 1.7922 -0.5139 -0.8899 27 1 3.5346 1.7701 0.0321 28 1 1.5616 2.4678 -1.2084 29 1 2.8223 1.0455 2.0629 30 1 3.6518 -0.1131 4.0700 31 1 1.9337 -4.1969 4.7046 32 1 3.4549 -4.5794 3.8634 33 1 5.0962 -6.1534 7.5455 34 1 3.5747 -5.7715 8.3866 35 1 4.1188 -8.2964 5.6792 36 1 5.5482 -8.4266 6.7317 37 1 4.7232 -10.6693 6.0699 38 1 3.1324 -10.2916 6.7730 39 1 4.8852 -12.5071 7.7381 40 1 4.3354 -10.0733 10.2891 41 1 2.9059 -9.9434 9.2367 42 1 5.3217 -8.0781 9.1952 43 1 3.7309 -7.7004 9.8983 44 1 1.9483 -3.7683 2.6549 45 1 1.1312 -2.6047 0.6456 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_479556_16737258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:42:09 Heat of formation + Delta-G solvation = -185.087579 kcal Electronic energy + Delta-G solvation = -26391.749044 eV Core-core repulsion = 22340.909949 eV Total energy + Delta-G solvation = -4050.839096 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.154 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90354 -41.17863 -40.15360 -39.24247 -37.79733 -37.15792 -36.61033 -32.49169 -32.15480 -31.95802 -31.93174 -30.04593 -26.77617 -26.20087 -24.23955 -23.92799 -22.82287 -22.32059 -21.89686 -20.98869 -19.70475 -18.65437 -18.27282 -18.13166 -18.11650 -17.93216 -16.90452 -16.74198 -16.46696 -16.37700 -15.95010 -15.60041 -15.51358 -15.29523 -15.02768 -14.74145 -14.54905 -14.33157 -14.19454 -13.93949 -13.76157 -13.50196 -13.40773 -13.34545 -13.17602 -12.64558 -12.33750 -12.27671 -12.24932 -12.08777 -11.98808 -11.81380 -11.76077 -11.65451 -11.46705 -11.21972 -10.80181 -10.45261 -10.12464 -9.31102 -5.05360 0.17168 0.26823 0.89994 1.00556 1.27933 1.62063 1.96367 2.32568 2.58381 3.06222 3.28964 3.45400 3.48680 3.58732 3.61451 3.65092 3.69850 3.73059 3.81035 3.82013 3.94266 4.03558 4.15654 4.17972 4.22409 4.23994 4.30383 4.33631 4.36073 4.46319 4.50150 4.53290 4.66291 4.81720 4.91065 4.92756 4.94349 5.03261 5.03392 5.08855 5.17975 5.20636 5.22512 5.32874 5.41633 5.55751 6.14686 6.55278 6.57855 6.64635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.063 4.063 3 Si 0.684 3.316 4 C -0.155 4.155 5 C -0.074 4.074 6 C -0.139 4.139 7 C 0.133 3.867 8 O -0.293 6.293 9 C 0.068 3.932 10 C 0.464 3.536 11 O -0.481 6.481 12 O -0.351 6.351 13 C 0.073 3.927 14 C -0.089 4.089 15 H 0.087 0.913 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.102 3.898 19 H 0.055 0.945 20 O -0.569 6.569 21 C -0.111 4.111 22 C -0.111 4.111 23 C -0.209 4.209 24 C -0.050 4.050 25 H 0.379 0.621 26 H 0.113 0.887 27 H -0.257 1.257 28 H -0.255 1.255 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.379 0.621 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.132 0.868 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -1.127 -0.080 1.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.174 4.174 3 Si 0.586 3.414 4 C -0.156 4.156 5 C -0.092 4.092 6 C -0.158 4.158 7 C 0.088 3.912 8 O -0.207 6.207 9 C -0.008 4.008 10 C 0.305 3.695 11 O -0.366 6.366 12 O -0.269 6.269 13 C 0.000 4.000 14 C -0.108 4.108 15 H 0.106 0.894 16 C -0.150 4.150 17 C -0.190 4.190 18 C 0.043 3.957 19 H 0.073 0.927 20 O -0.375 6.375 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.227 4.227 24 C -0.068 4.068 25 H 0.226 0.774 26 H 0.130 0.870 27 H -0.182 1.182 28 H -0.179 1.179 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.226 0.774 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.150 0.850 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.222 -0.336 -0.124 0.421 hybrid contribution 0.452 -1.000 -0.652 1.277 sum 0.230 -1.336 -0.776 1.562 Atomic orbital electron populations 1.86504 1.17168 1.81698 1.49287 1.24976 0.85178 1.09957 0.97323 0.94797 0.81140 0.78101 0.87351 1.20277 1.02424 0.95129 0.97754 1.20823 0.96452 0.99154 0.92741 1.20407 1.04157 0.91554 0.99655 1.19000 0.94308 0.92238 0.85615 1.86085 1.74006 1.20965 1.39625 1.21883 1.02284 0.81993 0.94630 1.22836 0.78182 0.80966 0.87535 1.90749 1.37377 1.58164 1.50360 1.86409 1.72322 1.26277 1.41850 1.23254 0.98838 0.95158 0.82782 1.21290 1.02160 0.91321 0.95980 0.89443 1.21540 1.00474 0.94035 0.98978 1.22277 1.02733 0.96488 0.97487 1.21849 0.98188 0.81227 0.94392 0.92690 1.86521 1.76552 1.17021 1.57382 1.21439 1.01525 0.93252 0.98653 1.21479 1.02062 0.95655 0.95631 1.21324 1.04300 1.00793 0.96298 1.20815 0.96178 0.93551 0.96302 0.77350 0.87010 1.18185 1.17948 0.84767 0.84341 0.87312 0.87416 0.90648 0.90553 0.90719 0.91648 0.91456 0.90864 0.77360 0.90712 0.90875 0.91119 0.90574 0.85004 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.04 12.83 -35.23 -0.45 -0.41 16 2 C -0.06 0.03 2.80 36.01 0.10 0.14 16 3 Si 0.68 -0.83 29.80 -169.99 -5.07 -5.90 16 4 C -0.16 0.04 5.35 -104.60 -0.56 -0.52 16 5 C -0.07 0.05 8.66 -39.60 -0.34 -0.30 16 6 C -0.14 -0.06 9.99 -39.43 -0.39 -0.46 16 7 C 0.13 0.12 6.69 -39.21 -0.26 -0.14 16 8 O -0.29 -0.54 9.67 -39.35 -0.38 -0.92 16 9 C 0.07 -0.08 5.33 36.01 0.19 0.11 16 10 C 0.46 0.63 8.03 36.01 0.29 0.92 16 11 O -0.48 -2.47 16.25 -25.47 -0.41 -2.88 16 12 O -0.35 -0.03 9.76 -39.26 -0.38 -0.41 16 13 C 0.07 -0.05 4.84 37.16 0.18 0.13 16 14 C -0.09 0.16 2.44 -90.62 -0.22 -0.06 16 15 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 16 C -0.11 0.21 5.10 -26.73 -0.14 0.08 16 17 C -0.15 0.26 5.54 -26.73 -0.15 0.11 16 18 C 0.10 -0.08 3.47 -26.73 -0.09 -0.17 16 19 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 20 O -0.57 -0.34 13.32 -35.23 -0.47 -0.81 16 21 C -0.11 0.10 5.57 -26.73 -0.15 -0.05 16 22 C -0.11 0.23 5.20 -26.73 -0.14 0.10 16 23 C -0.21 0.10 9.04 -39.43 -0.36 -0.26 16 24 C -0.05 0.01 9.68 -39.61 -0.38 -0.37 16 25 H 0.38 -1.46 8.70 45.56 0.40 -1.07 16 26 H 0.11 -0.02 7.96 -51.93 -0.41 -0.43 16 27 H -0.26 -0.31 7.11 56.52 0.40 0.09 16 28 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 29 H 0.14 -0.36 4.91 -52.49 -0.26 -0.62 16 30 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 31 H 0.11 -0.38 7.66 -51.93 -0.40 -0.78 16 32 H 0.11 -0.37 7.66 -51.93 -0.40 -0.77 16 33 H 0.08 -0.04 8.13 -51.93 -0.42 -0.46 16 34 H 0.08 -0.05 8.13 -51.93 -0.42 -0.47 16 35 H 0.07 -0.12 7.82 -51.93 -0.41 -0.53 16 36 H 0.06 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.07 -0.16 8.14 -51.92 -0.42 -0.58 16 38 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 39 H 0.38 -1.22 9.08 45.56 0.41 -0.80 16 40 H 0.07 -0.03 8.14 -51.93 -0.42 -0.46 16 41 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 42 H 0.07 -0.17 8.14 -51.92 -0.42 -0.59 16 43 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 44 H 0.13 -0.37 6.30 -52.49 -0.33 -0.70 16 45 H 0.13 -0.13 8.06 -52.48 -0.42 -0.55 16 LS Contribution 369.33 15.07 5.57 5.57 Total: 0.00 -8.91 369.33 -10.11 -19.02 By element: Atomic # 1 Polarization: -6.41 SS G_CDS: -6.09 Total: -12.50 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -2.42 Total: -0.75 kcal Atomic # 8 Polarization: -3.34 SS G_CDS: -2.10 Total: -5.44 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -5.07 Total: -5.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -8.91 -10.11 -19.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_16737258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.069 kcal (2) G-P(sol) polarization free energy of solvation -8.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds