Wall clock time and date at job start Sat Mar 6 2021 09:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00377 * 2 1 4 4 C 1.53005 * 112.84849 * 65.98917 * 3 2 1 5 5 F 1.39899 * 109.47139 * 283.52256 * 4 3 2 6 6 F 1.39899 * 109.46930 * 43.52269 * 4 3 2 7 7 F 1.39900 * 109.46975 * 163.51933 * 4 3 2 8 8 C 1.53776 * 113.61620 * 294.79297 * 3 2 1 9 9 C 1.53779 * 87.08300 * 270.79802 * 8 3 2 10 10 H 1.08999 * 113.61286 * 219.93487 * 9 8 3 11 11 C 1.52995 * 113.61398 * 89.11722 * 9 8 3 12 12 O 1.45199 * 109.47521 * 176.53154 * 11 9 8 13 13 C 1.34223 * 117.00610 * 180.02562 * 12 11 9 14 14 O 1.20833 * 119.99841 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00462 * 179.97438 * 13 12 11 16 16 O 1.42893 * 109.47353 * 180.02562 * 15 13 12 17 17 C 1.35900 * 117.00034 * 180.02562 * 16 15 13 18 18 C 1.38731 * 120.05395 * 179.97438 * 17 16 15 19 19 C 1.38146 * 119.94246 * 179.97438 * 18 17 16 20 20 C 1.38267 * 120.05630 * 0.26173 * 19 18 17 21 21 C 1.50697 * 119.94625 * 179.71927 * 20 19 18 22 22 O 1.42902 * 109.47056 * 300.00027 * 21 20 19 23 23 Si 1.86301 * 109.47196 * 179.97438 * 21 20 19 24 24 C 1.38264 * 120.10930 * 359.48750 * 20 19 18 25 25 C 1.38149 * 120.05633 * 0.50660 * 24 20 19 26 26 C 1.53781 * 87.17405 * 334.52551 * 9 8 3 27 27 H 1.09001 * 109.47182 * 62.52804 * 1 2 3 28 28 H 1.09000 * 109.47345 * 182.52789 * 1 2 3 29 29 H 1.09000 * 109.47146 * 302.53347 * 1 2 3 30 30 H 1.08998 * 113.61552 * 156.25034 * 8 3 2 31 31 H 1.09003 * 113.61597 * 25.35101 * 8 3 2 32 32 H 1.09002 * 109.47744 * 56.52330 * 11 9 8 33 33 H 1.09008 * 109.47058 * 296.53056 * 11 9 8 34 34 H 1.09001 * 109.46610 * 59.99497 * 15 13 12 35 35 H 1.08997 * 109.46769 * 300.00040 * 15 13 12 36 36 H 1.07999 * 120.03061 * 0.02562 * 18 17 16 37 37 H 1.08006 * 119.97538 * 179.97438 * 19 18 17 38 38 H 1.09007 * 109.46986 * 59.99867 * 21 20 19 39 39 H 0.96708 * 113.99883 * 179.97438 * 22 21 20 40 40 H 1.48498 * 109.99808 * 60.00342 * 23 21 20 41 41 H 1.48498 * 109.99624 * 181.31976 * 23 21 20 42 42 H 1.07995 * 119.97270 * 180.25971 * 24 20 19 43 43 H 1.07998 * 120.02743 * 179.77074 * 25 24 20 44 44 H 1.08994 * 113.61460 * 140.02112 * 26 9 8 45 45 H 1.09000 * 113.61178 * 270.92921 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7278 2.0815 1.2880 5 9 0.4114 2.5548 1.2681 6 9 1.9031 1.2368 2.3893 7 9 2.6107 3.1625 1.3842 8 6 1.7211 2.1085 -1.2791 9 6 2.9981 1.4841 -1.8658 10 1 3.5936 2.1808 -2.4556 11 6 2.7565 0.1542 -2.5827 12 8 4.0000 -0.3122 -3.1695 13 6 3.9594 -1.4744 -3.8398 14 8 2.9192 -2.0822 -3.9327 15 6 5.2110 -2.0213 -4.4765 16 8 4.9133 -3.2586 -5.1264 17 6 5.9408 -3.8885 -5.7544 18 6 5.7229 -5.0941 -6.4053 19 6 6.7689 -5.7321 -7.0434 20 6 8.0333 -5.1728 -7.0292 21 6 9.1739 -5.8741 -7.7207 22 8 9.3607 -7.1664 -7.1401 23 14 10.7316 -4.8718 -7.5212 24 6 8.2520 -3.9688 -6.3857 25 6 7.2092 -3.3267 -5.7461 26 6 3.4927 1.3228 -0.4186 27 1 -0.3633 0.4741 -0.9118 28 1 -0.3634 -1.0267 0.0453 29 1 -0.3633 0.5527 0.8664 30 1 1.7864 3.1877 -1.1412 31 1 0.8094 1.8007 -1.7913 32 1 2.0140 0.2945 -3.3683 33 1 2.3932 -0.5835 -1.8671 34 1 5.9669 -2.1864 -3.7086 35 1 5.5874 -1.3077 -5.2094 36 1 4.7362 -5.5331 -6.4138 37 1 6.5999 -6.6710 -7.5499 38 1 8.9449 -5.9818 -8.7810 39 1 10.0803 -7.6758 -7.5375 40 1 11.0550 -4.7173 -6.0801 41 1 11.8570 -5.5368 -8.2258 42 1 9.2395 -3.5318 -6.3795 43 1 7.3813 -2.3881 -5.2404 44 1 4.0104 0.3810 -0.2365 45 1 4.0415 2.1876 -0.0459 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_479556_17321610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:01:57 Heat of formation + Delta-G solvation = -271.198655 kcal Electronic energy + Delta-G solvation = -34331.260570 eV Core-core repulsion = 28868.325491 eV Total energy + Delta-G solvation = -5462.935079 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.126 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.26824 -48.79913 -48.74061 -42.00997 -41.40610 -40.86847 -39.14530 -37.84365 -37.31230 -36.90787 -32.55123 -31.84668 -31.13957 -29.80267 -28.21460 -27.29377 -26.78365 -26.17413 -24.17801 -23.38914 -22.56124 -21.85789 -20.67855 -19.84444 -19.63461 -19.54776 -19.25009 -18.58519 -18.41380 -18.06828 -17.94945 -17.23852 -16.79764 -16.75014 -16.62728 -16.49699 -15.85151 -15.70405 -15.67400 -15.61688 -15.45763 -15.25499 -15.14475 -14.95264 -14.88553 -14.74577 -14.48310 -14.33012 -14.20420 -14.00496 -13.76875 -13.61445 -13.40705 -13.30329 -13.17149 -12.77407 -12.49491 -12.39659 -12.22324 -12.05614 -11.93481 -11.79678 -11.73270 -11.67818 -11.50664 -10.81778 -10.47248 -10.03113 -9.23815 -4.90415 0.26153 0.31481 0.94339 0.98376 1.33829 1.52244 1.63385 1.98342 2.06621 2.38448 2.55822 2.61784 2.62055 2.87282 3.20256 3.28876 3.41268 3.42901 3.55976 3.71747 3.81437 3.83656 3.97334 4.00474 4.02689 4.19880 4.22123 4.24079 4.30141 4.35487 4.41737 4.44867 4.46612 4.51292 4.60972 4.68576 4.69125 4.76643 4.82530 4.97409 4.99381 5.15344 5.24163 5.27214 5.51174 5.66996 5.68884 6.23089 6.56435 6.61060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.349 6.349 3 C 0.029 3.971 4 C 0.433 3.567 5 F -0.185 7.185 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.135 4.135 9 C -0.090 4.090 10 H 0.129 0.871 11 C 0.075 3.925 12 O -0.342 6.342 13 C 0.466 3.534 14 O -0.528 6.528 15 C 0.064 3.936 16 O -0.320 6.320 17 C 0.121 3.879 18 C -0.163 4.163 19 C -0.062 4.062 20 C -0.122 4.122 21 C -0.085 4.085 22 O -0.561 6.561 23 Si 0.768 3.232 24 C -0.078 4.078 25 C -0.198 4.198 26 C -0.111 4.111 27 H 0.069 0.931 28 H 0.107 0.893 29 H 0.049 0.951 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.093 0.907 39 H 0.394 0.606 40 H -0.296 1.296 41 H -0.291 1.291 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.091 0.909 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 5.553 -4.566 8.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.267 6.267 3 C -0.014 4.014 4 C 0.379 3.621 5 F -0.167 7.167 6 F -0.170 7.170 7 F -0.155 7.155 8 C -0.172 4.172 9 C -0.108 4.108 10 H 0.147 0.853 11 C 0.002 3.998 12 O -0.259 6.259 13 C 0.309 3.691 14 O -0.416 6.416 15 C -0.011 4.011 16 O -0.235 6.235 17 C 0.077 3.923 18 C -0.181 4.181 19 C -0.080 4.080 20 C -0.123 4.123 21 C -0.193 4.193 22 O -0.371 6.371 23 Si 0.673 3.327 24 C -0.095 4.095 25 C -0.216 4.216 26 C -0.148 4.148 27 H 0.088 0.912 28 H 0.125 0.875 29 H 0.067 0.933 30 H 0.148 0.852 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.149 0.851 37 H 0.153 0.847 38 H 0.111 0.889 39 H 0.244 0.756 40 H -0.224 1.224 41 H -0.218 1.218 42 H 0.169 0.831 43 H 0.185 0.815 44 H 0.110 0.890 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.479 5.398 -3.858 7.492 hybrid contribution -0.593 -1.299 0.704 1.592 sum 2.887 4.099 -3.155 5.923 Atomic orbital electron populations 1.23260 0.78833 1.04985 1.01958 1.88072 1.22011 1.22774 1.93855 1.24363 1.01054 0.86185 0.89785 1.21502 0.74128 0.78715 0.87777 1.93176 1.37285 1.89357 1.96838 1.93188 1.95028 1.71127 1.57698 1.93173 1.68728 1.57024 1.96594 1.23655 0.99773 1.01741 0.92053 1.22045 0.98080 0.95441 0.95245 0.85290 1.23144 0.83218 0.96087 0.97358 1.86377 1.39157 1.36733 1.63620 1.23441 0.90567 0.79122 0.75959 1.90739 1.34165 1.59325 1.57405 1.22232 0.92567 0.86316 0.99999 1.86043 1.34859 1.35590 1.66983 1.19097 0.86892 0.92759 0.93582 1.20621 1.00900 0.94894 1.01703 1.20925 0.91336 0.98959 0.96779 1.19467 0.94347 0.96314 1.02135 1.25018 1.05940 0.89040 0.99323 1.86550 1.57999 1.28240 1.64270 0.94239 0.72984 0.86669 0.78821 1.21020 0.99525 0.94115 0.94888 1.21506 0.91159 1.03560 1.05390 1.23416 0.90169 1.06044 0.95172 0.91236 0.87500 0.93271 0.85199 0.88011 0.90301 0.90399 0.84627 0.83851 0.85115 0.84692 0.88891 0.75576 1.22365 1.21793 0.83112 0.81460 0.89006 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.18 16 2 O -0.35 -0.60 8.34 -148.98 -1.24 -1.84 16 3 C 0.03 -0.05 0.85 -10.17 -0.01 -0.05 16 4 C 0.43 0.79 2.51 71.98 0.18 0.97 16 5 F -0.19 -0.48 15.24 44.97 0.69 0.21 16 6 F -0.19 -1.19 17.09 44.97 0.77 -0.42 16 7 F -0.17 -0.18 15.82 44.97 0.71 0.54 16 8 C -0.14 0.90 6.52 31.12 0.20 1.10 16 9 C -0.09 0.58 4.20 -10.27 -0.04 0.54 16 10 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 11 C 0.08 -0.11 5.06 71.98 0.36 0.26 16 12 O -0.34 0.26 10.22 -51.35 -0.52 -0.27 16 13 C 0.47 1.33 8.03 71.24 0.57 1.90 16 14 O -0.53 -6.29 16.25 28.37 0.46 -5.83 16 15 C 0.06 -0.22 5.33 71.24 0.38 0.16 16 16 O -0.32 -1.49 9.67 -73.35 -0.71 -2.20 16 17 C 0.12 0.37 6.69 22.50 0.15 0.52 16 18 C -0.16 -0.76 9.99 22.37 0.22 -0.54 16 19 C -0.06 -0.22 9.60 22.25 0.21 0.00 16 20 C -0.12 -0.21 5.42 -19.85 -0.11 -0.32 16 21 C -0.08 0.10 2.81 71.23 0.20 0.30 16 22 O -0.56 -1.21 12.74 -148.98 -1.90 -3.11 16 23 Si 0.77 -2.55 29.79 68.60 2.04 -0.51 16 24 C -0.08 0.11 8.66 22.25 0.19 0.30 16 25 C -0.20 0.42 9.04 22.37 0.20 0.62 16 26 C -0.11 0.52 6.92 31.21 0.22 0.73 16 27 H 0.07 -0.33 6.76 -2.39 -0.02 -0.35 16 28 H 0.11 -0.31 8.14 -2.39 -0.02 -0.33 16 29 H 0.05 -0.02 6.25 -2.39 -0.01 -0.04 16 30 H 0.13 -1.23 8.06 -2.39 -0.02 -1.25 16 31 H 0.10 -0.78 6.70 -2.39 -0.02 -0.79 16 32 H 0.08 -0.12 8.13 -2.39 -0.02 -0.14 16 33 H 0.08 0.18 6.08 -2.38 -0.01 0.17 16 34 H 0.14 -1.22 7.66 -2.39 -0.02 -1.24 16 35 H 0.14 -1.49 7.66 -2.39 -0.02 -1.51 16 36 H 0.13 0.57 8.06 -2.91 -0.02 0.55 16 37 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 38 H 0.09 -0.45 7.96 -2.38 -0.02 -0.47 16 39 H 0.39 -2.27 8.74 -74.05 -0.65 -2.92 16 40 H -0.30 -1.04 7.11 99.48 0.71 -0.34 16 41 H -0.29 -0.40 7.11 99.48 0.71 0.31 16 42 H 0.15 -0.93 4.87 -2.91 -0.01 -0.94 16 43 H 0.17 -1.61 6.30 -2.91 -0.02 -1.63 16 44 H 0.09 -0.27 8.10 -2.39 -0.02 -0.29 16 45 H 0.13 -0.98 7.01 -2.39 -0.02 -1.00 16 Total: 0.00 -23.92 384.15 4.87 -19.05 By element: Atomic # 1 Polarization: -13.74 SS G_CDS: 0.46 Total: -13.28 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 4.12 Total: 7.67 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -3.91 Total: -13.24 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 2.17 Total: 0.32 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.04 Total: -0.51 kcal Total: -23.92 4.87 -19.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_479556_17321610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -252.147 kcal (2) G-P(sol) polarization free energy of solvation -23.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -276.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds