Wall clock time and date at job start Sat Mar 6 2021 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47191 * 2 1 4 4 C 1.50697 * 109.47023 * 120.00228 * 2 1 3 5 5 C 1.38246 * 119.97267 * 245.01920 * 4 2 1 6 6 C 1.38286 * 120.11263 * 179.97438 * 5 4 2 7 7 C 1.38128 * 120.05761 * 359.68741 * 6 5 4 8 8 C 1.38757 * 119.93569 * 0.59111 * 7 6 5 9 9 O 1.35905 * 120.04997 * 179.70162 * 8 7 6 10 10 C 1.42903 * 117.00111 * 359.72352 * 9 8 7 11 11 C 1.50696 * 109.47355 * 179.97438 * 10 9 8 12 12 O 1.20833 * 119.99595 * 0.02562 * 11 10 9 13 13 O 1.34224 * 120.00302 * 180.02562 * 11 10 9 14 14 C 1.45206 * 117.00077 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46777 * 179.97438 * 14 13 11 16 16 H 1.09000 * 112.85372 * 45.34119 * 15 14 13 17 17 C 1.53786 * 113.61110 * 176.52820 * 15 14 13 18 18 C 1.53783 * 87.07901 * 139.98056 * 17 15 14 19 19 H 1.09007 * 113.61243 * 89.12086 * 18 17 15 20 20 O 1.42899 * 113.61562 * 219.93201 * 18 17 15 21 21 C 1.53782 * 113.61793 * 274.13344 * 15 14 13 22 22 C 1.38163 * 119.97488 * 65.00151 * 4 2 1 23 23 H 0.96700 * 113.99759 * 60.00006 * 1 2 3 24 24 H 1.09000 * 109.47194 * 239.99667 * 2 1 3 25 25 H 1.48500 * 110.00502 * 298.68018 * 3 2 1 26 26 H 1.48504 * 109.99903 * 60.00162 * 3 2 1 27 27 H 1.08001 * 119.94395 * 359.97438 * 5 4 2 28 28 H 1.08003 * 119.97150 * 179.97438 * 6 5 4 29 29 H 1.07991 * 120.03147 * 180.31700 * 7 6 5 30 30 H 1.09009 * 109.46537 * 60.00162 * 10 9 8 31 31 H 1.08995 * 109.47150 * 300.00352 * 10 9 8 32 32 H 1.09000 * 109.47070 * 300.00162 * 14 13 11 33 33 H 1.09001 * 109.46626 * 60.00180 * 14 13 11 34 34 H 1.08995 * 113.61582 * 254.52816 * 17 15 14 35 35 H 1.08995 * 113.61270 * 25.35334 * 17 15 14 36 36 H 0.96692 * 114.00112 * 180.02562 * 20 18 17 37 37 H 1.08997 * 113.61242 * 334.57563 * 21 15 14 38 38 H 1.08998 * 113.61192 * 105.47295 * 21 15 14 39 39 H 1.08003 * 120.02792 * 0.03728 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6383 -0.0117 2.1911 6 6 3.1002 -0.6606 3.3216 7 6 2.8504 -2.0078 3.4966 8 6 2.1460 -2.7126 2.5310 9 8 1.9041 -4.0395 2.6980 10 6 2.4096 -4.6462 3.8889 11 6 2.0470 -6.1089 3.9005 12 8 1.4203 -6.5831 2.9827 13 8 2.4201 -6.8848 4.9303 14 6 2.0366 -8.2841 4.8741 15 6 2.5466 -9.0032 6.1245 16 1 2.3580 -8.4440 7.0410 17 6 2.1193 -10.4784 6.2042 18 6 3.5306 -10.7767 6.7373 19 1 3.6124 -10.7027 7.8217 20 8 4.0950 -11.9830 6.2194 21 6 3.9936 -9.5083 5.9978 22 6 1.6845 -2.0595 1.3976 23 1 -0.3933 0.4417 -0.7651 24 1 1.7924 -0.5139 -0.8899 25 1 1.5880 2.4586 -1.2242 26 1 1.5615 2.4678 1.2085 27 1 2.8304 1.0428 2.0586 28 1 3.6526 -0.1126 4.0705 29 1 3.2068 -2.5130 4.3820 30 1 1.9726 -4.1570 4.7596 31 1 3.4940 -4.5401 3.9187 32 1 0.9504 -8.3616 4.8274 33 1 2.4722 -8.7448 3.9874 34 1 1.3293 -10.6655 6.9314 35 1 1.9146 -10.9267 5.2320 36 1 4.9824 -12.1762 6.5513 37 1 4.3036 -9.6913 4.9690 38 1 4.7144 -8.9134 6.5586 39 1 1.1324 -2.6051 0.6467 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4860304_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:31:17 Heat of formation + Delta-G solvation = -139.341615 kcal Electronic energy + Delta-G solvation = -22595.894301 eV Core-core repulsion = 18858.114137 eV Total energy + Delta-G solvation = -3737.780164 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84805 -41.12911 -40.29603 -39.08902 -37.62080 -37.28618 -36.04682 -32.63172 -31.95634 -30.41620 -28.85883 -26.88115 -26.81060 -23.86954 -23.68595 -22.76246 -21.67396 -20.67819 -19.39741 -18.73270 -18.55053 -18.30717 -18.04463 -17.81671 -17.28730 -16.78050 -16.63108 -16.40330 -15.85889 -15.64396 -15.22506 -15.04803 -14.57386 -14.38715 -14.01702 -13.95581 -13.69684 -13.57545 -13.49086 -13.34455 -12.87259 -12.54280 -12.49896 -12.27140 -12.20356 -12.02393 -11.76264 -11.68701 -11.46285 -11.32334 -10.84715 -10.54761 -9.92652 -9.30146 -4.97951 0.18645 0.39331 0.93536 1.05435 1.25553 1.58200 1.93246 2.37435 2.60733 3.07043 3.28665 3.32024 3.39170 3.47082 3.66278 3.74374 3.78262 3.79122 3.80188 3.86301 4.03416 4.06400 4.13118 4.18980 4.21728 4.35360 4.48755 4.52593 4.59595 4.65248 4.65996 4.84354 4.95617 4.98791 5.18881 5.20531 5.31456 5.33991 5.45284 5.61200 6.23024 6.41999 6.61719 6.63114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.079 4.079 3 Si 0.689 3.311 4 C -0.033 4.033 5 C -0.149 4.149 6 C -0.072 4.072 7 C -0.204 4.204 8 C 0.128 3.872 9 O -0.294 6.294 10 C 0.069 3.931 11 C 0.464 3.536 12 O -0.481 6.481 13 O -0.352 6.352 14 C 0.081 3.919 15 C -0.111 4.111 16 H 0.108 0.892 17 C -0.120 4.120 18 C 0.076 3.924 19 H 0.086 0.914 20 O -0.559 6.559 21 C -0.165 4.165 22 C -0.118 4.118 23 H 0.381 0.619 24 H 0.079 0.921 25 H -0.261 1.261 26 H -0.255 1.255 27 H 0.130 0.870 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.381 0.619 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 1.671 3.152 6.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.189 4.189 3 Si 0.590 3.410 4 C -0.033 4.033 5 C -0.167 4.167 6 C -0.090 4.090 7 C -0.223 4.223 8 C 0.084 3.916 9 O -0.208 6.208 10 C -0.007 4.007 11 C 0.304 3.696 12 O -0.366 6.366 13 O -0.269 6.269 14 C 0.008 3.992 15 C -0.130 4.130 16 H 0.126 0.874 17 C -0.158 4.158 18 C 0.017 3.983 19 H 0.103 0.897 20 O -0.365 6.365 21 C -0.202 4.202 22 C -0.136 4.136 23 H 0.229 0.771 24 H 0.097 0.903 25 H -0.186 1.186 26 H -0.179 1.179 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.114 0.886 36 H 0.228 0.772 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.067 1.841 2.992 5.375 hybrid contribution -0.578 -0.189 -0.078 0.613 sum 3.489 1.652 2.914 4.837 Atomic orbital electron populations 1.86602 1.17553 1.80228 1.49794 1.24863 0.84704 1.11201 0.98100 0.94948 0.91599 0.74226 0.80213 1.19024 0.96804 0.92676 0.94838 1.20952 1.01240 0.99869 0.94652 1.20894 0.97630 0.93551 0.96912 1.21320 1.04586 0.96146 1.00257 1.18929 0.95910 0.81835 0.94967 1.86092 1.74130 1.20675 1.39854 1.21876 1.01561 0.88106 0.89182 1.22866 0.77303 0.88985 0.80424 1.90756 1.35566 1.74768 1.35554 1.86415 1.72721 1.23104 1.44671 1.23164 1.00848 0.76271 0.98949 1.22384 0.97360 0.95079 0.98136 0.87423 1.23070 0.96284 0.93157 1.03253 1.23312 0.94495 0.83624 0.96827 0.89667 1.86530 1.35961 1.42128 1.71890 1.23823 0.96330 0.97548 1.02528 1.20242 1.02455 0.93737 0.97211 0.77104 0.90289 1.18626 1.17924 0.85212 0.84856 0.84962 0.87392 0.87314 0.90445 0.90481 0.89947 0.88647 0.77156 0.89004 0.90605 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.93 12.81 -35.23 -0.45 -1.38 16 2 C -0.08 -0.02 2.79 36.00 0.10 0.08 16 3 Si 0.69 -0.65 29.85 -169.99 -5.07 -5.72 16 4 C -0.03 -0.06 5.38 -104.65 -0.56 -0.62 16 5 C -0.15 -0.06 8.67 -39.56 -0.34 -0.40 16 6 C -0.07 0.03 10.04 -39.60 -0.40 -0.37 16 7 C -0.20 0.01 9.04 -39.43 -0.36 -0.35 16 8 C 0.13 0.29 6.69 -39.22 -0.26 0.02 16 9 O -0.29 -0.90 9.67 -39.39 -0.38 -1.28 16 10 C 0.07 -0.03 5.33 36.00 0.19 0.16 16 11 C 0.46 1.03 8.03 36.00 0.29 1.32 16 12 O -0.48 -2.95 16.25 -25.48 -0.41 -3.37 16 13 O -0.35 -0.30 10.22 -39.24 -0.40 -0.70 16 14 C 0.08 0.02 5.29 37.16 0.20 0.21 16 15 C -0.11 0.16 4.01 -89.80 -0.36 -0.20 16 16 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 17 C -0.12 0.13 7.48 -25.92 -0.19 -0.06 16 18 C 0.08 -0.09 5.21 -25.83 -0.13 -0.22 16 19 H 0.09 -0.22 8.14 -51.92 -0.42 -0.65 16 20 O -0.56 -0.18 13.68 -35.23 -0.48 -0.66 16 21 C -0.16 0.23 7.48 -25.83 -0.19 0.04 16 22 C -0.12 -0.33 9.62 -39.44 -0.38 -0.71 16 23 H 0.38 -0.91 8.74 45.56 0.40 -0.51 16 24 H 0.08 -0.10 7.96 -51.93 -0.41 -0.52 16 25 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 26 H -0.25 -0.51 7.05 56.52 0.40 -0.12 16 27 H 0.13 -0.17 4.86 -52.49 -0.26 -0.42 16 28 H 0.13 -0.39 8.06 -52.48 -0.42 -0.82 16 29 H 0.13 -0.37 6.30 -52.49 -0.33 -0.70 16 30 H 0.11 -0.30 7.65 -51.92 -0.40 -0.70 16 31 H 0.11 -0.33 7.67 -51.93 -0.40 -0.73 16 32 H 0.08 0.02 8.13 -51.93 -0.42 -0.40 16 33 H 0.08 0.05 7.87 -51.93 -0.41 -0.36 16 34 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 35 H 0.10 -0.02 8.10 -51.93 -0.42 -0.44 16 36 H 0.38 -1.42 9.12 45.56 0.42 -1.00 16 37 H 0.09 -0.05 7.92 -51.93 -0.41 -0.46 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 39 H 0.13 0.41 8.06 -52.48 -0.42 -0.01 16 LS Contribution 334.70 15.07 5.04 5.04 Total: 0.00 -9.77 334.70 -8.95 -18.71 By element: Atomic # 1 Polarization: -5.16 SS G_CDS: -4.38 Total: -9.54 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.41 Total: -1.11 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -2.13 Total: -7.39 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.07 Total: -5.72 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -9.77 -8.95 -18.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4860304_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.630 kcal (2) G-P(sol) polarization free energy of solvation -9.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds