Wall clock time and date at job start Sat Mar 6 2021 07:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47244 * 2 1 4 4 C 1.52999 * 109.47033 * 239.99756 * 2 1 3 5 5 O 1.45203 * 109.46782 * 120.00080 * 2 1 3 6 6 C 1.34631 * 117.00249 * 60.00245 * 5 2 1 7 7 O 1.21511 * 119.99971 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99932 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99838 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.85116 * 23.79705 * 9 8 6 11 11 C 1.53777 * 113.61451 * 154.99623 * 9 8 6 12 12 C 1.53782 * 87.08471 * 89.11461 * 11 9 8 13 13 H 1.09001 * 113.61319 * 270.80387 * 12 11 9 14 14 C 1.52997 * 113.61871 * 139.98088 * 12 11 9 15 15 O 1.45199 * 109.47075 * 176.53086 * 14 12 11 16 16 C 1.34230 * 116.99614 * 179.97438 * 15 14 12 17 17 O 1.20824 * 120.00179 * 0.02562 * 16 15 14 18 18 C 1.50706 * 119.99717 * 179.97438 * 16 15 14 19 19 O 1.42901 * 109.47102 * 180.02562 * 18 16 15 20 20 C 1.35895 * 117.00182 * 180.02562 * 19 18 16 21 21 C 1.38708 * 120.05864 * 179.73055 * 20 19 18 22 22 C 1.38169 * 119.94736 * 179.76508 * 21 20 19 23 23 C 1.50697 * 119.97421 * 180.22915 * 22 21 20 24 24 O 1.42895 * 109.47282 * 300.25190 * 23 22 21 25 25 Si 1.86301 * 109.46982 * 180.25204 * 23 22 21 26 26 C 1.38247 * 120.04976 * 0.48207 * 22 21 20 27 27 C 1.38277 * 120.11510 * 359.76671 * 26 22 21 28 28 C 1.38123 * 120.05849 * 0.02562 * 27 26 22 29 29 C 1.53785 * 87.16968 * 25.38967 * 12 11 9 30 30 H 1.08996 * 109.47166 * 300.00573 * 1 2 3 31 31 H 1.09001 * 109.46926 * 60.00365 * 1 2 3 32 32 H 1.08998 * 109.47368 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47342 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47368 * 299.99815 * 3 2 1 35 35 H 1.09003 * 109.47174 * 59.99745 * 3 2 1 36 36 H 1.08998 * 109.47318 * 300.00367 * 4 2 1 37 37 H 1.09002 * 109.46996 * 60.00542 * 4 2 1 38 38 H 1.08999 * 109.47231 * 179.97438 * 4 2 1 39 39 H 0.97000 * 120.00273 * 359.97438 * 8 6 5 40 40 H 1.09011 * 113.61618 * 334.56813 * 11 9 8 41 41 H 1.09002 * 113.61621 * 203.66166 * 11 9 8 42 42 H 1.09002 * 109.47153 * 56.53028 * 14 12 11 43 43 H 1.09001 * 109.46832 * 296.53219 * 14 12 11 44 44 H 1.09000 * 109.47303 * 300.00327 * 18 16 15 45 45 H 1.09003 * 109.46535 * 60.00663 * 18 16 15 46 46 H 1.08003 * 120.02545 * 359.97438 * 21 20 19 47 47 H 1.09003 * 109.47391 * 60.25231 * 23 22 21 48 48 H 0.96706 * 113.99789 * 300.00644 * 24 23 22 49 49 H 1.48500 * 109.99828 * 58.68265 * 25 23 22 50 50 H 1.48497 * 109.99849 * 179.97438 * 25 23 22 51 51 H 1.08009 * 119.94148 * 179.74852 * 26 22 21 52 52 H 1.08008 * 119.97417 * 179.97438 * 27 26 22 53 53 H 1.07998 * 120.03532 * 179.97438 * 28 27 26 54 54 H 1.09000 * 113.61195 * 89.16170 * 29 12 11 55 55 H 1.09001 * 113.61520 * 220.06304 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4172 9 6 1.6731 -4.0665 2.5837 10 1 1.4207 -4.5503 1.6401 11 6 2.6459 -4.8810 3.4526 12 6 1.8051 -4.4450 4.6642 13 1 2.1353 -3.5067 5.1099 14 6 1.5989 -5.5538 5.6981 15 8 0.8677 -5.0250 6.8356 16 6 0.6024 -5.8765 7.8387 17 8 0.9693 -7.0256 7.7687 18 6 -0.1523 -5.3990 9.0527 19 8 -0.3083 -6.4813 9.9727 20 6 -0.9725 -6.2176 11.1286 21 6 -1.1651 -7.2234 12.0642 22 6 -1.8365 -6.9515 13.2408 23 6 -2.0415 -8.0425 14.2600 24 8 -2.7859 -9.1107 13.6711 25 14 -2.9801 -7.3616 15.7181 26 6 -2.3248 -5.6808 13.4815 27 6 -2.1386 -4.6777 12.5481 28 6 -1.4644 -4.9432 11.3722 29 6 0.6255 -4.2831 3.6909 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 2.6267 -2.2365 3.0834 40 1 3.6613 -4.4844 3.4604 41 1 2.6107 -5.9532 3.2598 42 1 2.5681 -5.9257 6.0302 43 1 1.0316 -6.3688 5.2485 44 1 0.4030 -4.5926 9.5317 45 1 -1.1340 -5.0346 8.7500 46 1 -0.7876 -8.2174 11.8746 47 1 -1.0729 -8.4152 14.5932 48 1 -3.6607 -8.8509 13.3512 49 1 -4.2895 -6.8215 15.2720 50 1 -3.1893 -8.4279 16.7302 51 1 -2.8529 -5.4712 14.4001 52 1 -2.5214 -3.6858 12.7383 53 1 -1.3196 -4.1596 10.6433 54 1 0.0368 -5.1916 3.5633 55 1 0.0120 -3.4046 3.8906 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4860304_15734084.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:06:47 Heat of formation + Delta-G solvation = -172.246646 kcal Electronic energy + Delta-G solvation = -35569.339302 eV Core-core repulsion = 30540.109931 eV Total energy + Delta-G solvation = -5029.229371 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 394.196 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.04788 -41.84740 -41.16078 -40.35097 -39.21760 -38.05195 -37.55139 -37.27797 -35.37917 -34.12664 -32.50528 -31.93915 -30.41928 -28.90049 -28.38380 -28.31311 -26.85655 -26.76879 -24.73514 -23.70215 -23.34851 -22.86428 -21.78310 -21.18040 -20.32499 -19.55250 -19.33787 -18.73397 -18.14854 -18.04321 -17.72054 -17.59082 -17.22228 -17.13019 -16.85639 -16.64002 -16.49270 -16.18954 -15.87961 -15.51296 -15.41822 -15.25387 -15.12087 -14.86869 -14.62552 -14.48258 -14.19760 -14.06632 -13.77538 -13.62241 -13.47605 -13.37380 -13.29235 -13.07536 -13.01032 -12.93302 -12.88181 -12.64467 -12.53989 -12.34916 -12.20612 -12.15743 -12.03184 -11.97156 -11.84123 -11.62574 -11.47093 -11.41024 -11.23195 -11.14022 -10.69638 -10.21506 -9.93877 -9.33140 -4.90728 0.18973 0.36980 0.93677 0.94284 1.10661 1.30792 1.62261 1.70534 1.96880 2.39939 2.65051 3.08619 3.27471 3.36238 3.39801 3.49846 3.64412 3.72284 3.73033 3.76237 3.78937 3.87113 3.92953 3.94901 3.95890 4.11894 4.16369 4.23575 4.31701 4.34586 4.38701 4.46072 4.54258 4.59519 4.59762 4.62729 4.70754 4.72390 4.75211 4.81182 4.86479 4.87422 4.93695 4.97535 5.00085 5.03713 5.13647 5.21763 5.23682 5.25610 5.30831 5.35898 5.44002 5.45703 5.59527 5.65536 6.22937 6.36080 6.45859 6.53624 7.31335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.368 6.368 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.682 5.682 9 C 0.131 3.869 10 H 0.095 0.905 11 C -0.122 4.122 12 C -0.101 4.101 13 H 0.115 0.885 14 C 0.073 3.927 15 O -0.345 6.345 16 C 0.465 3.535 17 O -0.529 6.529 18 C 0.065 3.935 19 O -0.325 6.325 20 C 0.114 3.886 21 C -0.146 4.146 22 C -0.082 4.082 23 C -0.093 4.093 24 O -0.551 6.551 25 Si 0.784 3.216 26 C -0.154 4.154 27 C -0.070 4.070 28 C -0.201 4.201 29 C -0.145 4.145 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.418 0.582 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.114 0.886 47 H 0.121 0.879 48 H 0.386 0.614 49 H -0.277 1.277 50 H -0.306 1.306 51 H 0.150 0.850 52 H 0.163 0.837 53 H 0.161 0.839 54 H 0.098 0.902 55 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 9.293 1.890 9.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.399 3.601 7 O -0.484 6.484 8 N -0.342 5.342 9 C 0.027 3.973 10 H 0.113 0.887 11 C -0.160 4.160 12 C -0.119 4.119 13 H 0.133 0.867 14 C 0.000 4.000 15 O -0.262 6.262 16 C 0.309 3.691 17 O -0.418 6.418 18 C -0.010 4.010 19 O -0.239 6.239 20 C 0.070 3.930 21 C -0.165 4.165 22 C -0.082 4.082 23 C -0.201 4.201 24 O -0.359 6.359 25 Si 0.688 3.312 26 C -0.172 4.172 27 C -0.088 4.088 28 C -0.220 4.220 29 C -0.184 4.184 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.255 0.745 40 H 0.115 0.885 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.157 0.843 45 H 0.153 0.847 46 H 0.133 0.867 47 H 0.139 0.861 48 H 0.236 0.764 49 H -0.203 1.203 50 H -0.234 1.234 51 H 0.167 0.833 52 H 0.180 0.820 53 H 0.178 0.822 54 H 0.116 0.884 55 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.904 8.211 1.899 8.476 hybrid contribution -0.406 -0.950 -0.948 1.402 sum 0.498 7.261 0.952 7.340 Atomic orbital electron populations 1.22477 0.94070 1.03682 1.03540 1.22344 0.94425 0.92566 0.81456 1.21895 1.02491 0.90850 1.04275 1.22482 1.01681 1.02253 0.97396 1.86309 1.71533 1.23177 1.47265 1.18318 0.78580 0.80812 0.82348 1.90912 1.42124 1.70913 1.44434 1.44341 1.54907 1.11893 1.23049 1.21846 0.96886 0.79276 0.99323 0.88659 1.23335 0.98940 1.01700 0.91994 1.22679 0.97810 0.98936 0.92484 0.86671 1.23346 0.96074 0.97223 0.83363 1.86438 1.69147 1.42438 1.28168 1.23436 0.77323 0.83866 0.84522 1.90737 1.50062 1.21106 1.79881 1.22199 1.03188 0.89450 0.86137 1.86042 1.72528 1.37583 1.27747 1.19108 0.93784 0.94771 0.85377 1.20287 1.03598 0.98640 0.93958 1.20134 0.97505 0.95770 0.94829 1.25451 1.02947 0.89678 1.02037 1.86581 1.33452 1.35941 1.79951 0.93914 0.80222 0.82269 0.74804 1.21235 1.02510 0.92390 1.01053 1.21333 0.95253 1.00422 0.91794 1.21657 1.03574 0.95417 1.01308 1.23596 0.96703 1.03225 0.94891 0.91861 0.89515 0.91817 0.91137 0.88363 0.91096 0.91793 0.89511 0.91884 0.74491 0.88543 0.86906 0.90482 0.90849 0.84316 0.84685 0.86744 0.86142 0.76444 1.20334 1.23415 0.83326 0.81957 0.82181 0.88364 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 2 C 0.13 0.27 1.13 -10.79 -0.01 0.26 16 3 C -0.14 0.40 8.85 71.98 0.64 1.04 16 4 C -0.18 -0.48 8.37 71.98 0.60 0.13 16 5 O -0.37 -1.59 9.94 -55.41 -0.55 -2.14 16 6 C 0.65 3.55 8.06 129.79 1.05 4.59 16 7 O -0.59 -6.62 11.48 19.81 0.23 -6.39 16 8 N -0.68 0.88 5.26 -567.34 -2.99 -2.11 16 9 C 0.13 -0.36 4.33 45.58 0.20 -0.17 16 10 H 0.10 0.10 7.46 -2.39 -0.02 0.08 16 11 C -0.12 0.92 7.39 31.12 0.23 1.15 16 12 C -0.10 0.65 3.89 -10.27 -0.04 0.61 16 13 H 0.12 -0.93 8.14 -2.39 -0.02 -0.95 16 14 C 0.07 -0.18 5.29 71.98 0.38 0.20 16 15 O -0.35 0.17 10.22 -51.42 -0.53 -0.36 16 16 C 0.47 1.48 8.03 71.24 0.57 2.05 16 17 O -0.53 -6.45 16.25 28.40 0.46 -5.99 16 18 C 0.07 -0.19 5.33 71.24 0.38 0.19 16 19 O -0.32 -1.78 9.67 -73.29 -0.71 -2.49 16 20 C 0.11 0.35 6.69 22.51 0.15 0.50 16 21 C -0.15 -0.76 9.55 22.37 0.21 -0.55 16 22 C -0.08 -0.09 5.39 -19.88 -0.11 -0.20 16 23 C -0.09 -0.07 2.82 71.23 0.20 0.13 16 24 O -0.55 -2.60 12.76 -148.98 -1.90 -4.50 16 25 Si 0.78 -1.94 29.79 68.60 2.04 0.11 16 26 C -0.15 0.47 8.67 22.28 0.19 0.66 16 27 C -0.07 0.35 10.04 22.25 0.22 0.58 16 28 C -0.20 0.69 9.04 22.37 0.20 0.89 16 29 C -0.15 0.56 7.44 31.18 0.23 0.79 16 30 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.09 -0.07 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 33 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 34 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 37 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 38 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.42 -2.51 8.81 -92.71 -0.82 -3.33 16 40 H 0.10 -0.90 8.14 -2.38 -0.02 -0.92 16 41 H 0.11 -0.98 8.10 -2.39 -0.02 -1.00 16 42 H 0.08 -0.17 8.13 -2.39 -0.02 -0.19 16 43 H 0.07 -0.11 7.87 -2.39 -0.02 -0.13 16 44 H 0.14 -1.28 7.66 -2.39 -0.02 -1.30 16 45 H 0.14 -1.16 7.66 -2.39 -0.02 -1.18 16 46 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 47 H 0.12 0.00 7.96 -2.39 -0.02 -0.02 16 48 H 0.39 -0.50 8.70 -74.05 -0.64 -1.15 16 49 H -0.28 -0.11 7.11 99.48 0.71 0.59 16 50 H -0.31 -1.74 7.11 99.48 0.71 -1.03 16 51 H 0.15 -1.10 4.88 -2.91 -0.01 -1.11 16 52 H 0.16 -1.79 8.06 -2.91 -0.02 -1.81 16 53 H 0.16 -1.58 6.30 -2.91 -0.02 -1.60 16 54 H 0.10 -0.39 7.92 -2.39 -0.02 -0.41 16 55 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 Total: 0.00 -27.08 449.01 1.47 -25.61 By element: Atomic # 1 Polarization: -14.24 SS G_CDS: -0.50 Total: -14.74 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 5.90 Total: 12.99 kcal Atomic # 7 Polarization: 0.88 SS G_CDS: -2.99 Total: -2.11 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -3.00 Total: -21.87 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.04 Total: 0.11 kcal Total: -27.08 1.47 -25.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4860304_15734084.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.633 kcal (2) G-P(sol) polarization free energy of solvation -27.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds