Wall clock time and date at job start Sat Mar 6 2021 07:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86302 * 109.46933 * 2 1 4 4 C 1.86301 * 109.47459 * 239.99946 * 2 1 3 5 5 C 1.86305 * 109.47093 * 119.99785 * 2 1 3 6 6 O 1.45202 * 109.46713 * 60.00032 * 5 2 1 7 7 C 1.34230 * 116.99836 * 75.00548 * 6 5 2 8 8 O 1.20833 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00262 * 180.27336 * 7 6 5 10 10 O 1.42892 * 109.47509 * 179.72203 * 9 7 6 11 11 C 1.35906 * 117.00250 * 179.97438 * 10 9 7 12 12 C 1.38712 * 120.05438 * 359.72624 * 11 10 9 13 13 C 1.38166 * 119.94233 * 179.72611 * 12 11 10 14 14 C 1.38239 * 120.05419 * 0.56680 * 13 12 11 15 15 C 1.38284 * 120.11463 * 359.68379 * 14 13 12 16 16 C 1.50698 * 119.97292 * 180.02562 * 15 14 13 17 17 O 1.42912 * 109.47092 * 245.02152 * 16 15 14 18 18 Si 1.86296 * 109.47459 * 5.02029 * 16 15 14 19 19 H 1.48502 * 109.47016 * 59.99979 * 18 16 15 20 20 H 1.48497 * 109.47350 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47236 * 300.00442 * 18 16 15 22 22 C 1.38123 * 120.05334 * 0.04383 * 15 14 13 23 23 H 1.08992 * 109.47475 * 299.99955 * 1 2 3 24 24 H 1.08998 * 109.47074 * 60.00398 * 1 2 3 25 25 H 1.09005 * 109.47166 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47178 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47360 * 299.99985 * 3 2 1 28 28 H 1.09008 * 109.46874 * 60.00098 * 3 2 1 29 29 H 1.08996 * 109.46735 * 300.00261 * 4 2 1 30 30 H 1.09008 * 109.46766 * 59.99812 * 4 2 1 31 31 H 1.08991 * 109.47017 * 179.97438 * 4 2 1 32 32 H 1.09000 * 109.46950 * 300.00180 * 5 2 1 33 33 H 1.08999 * 109.46878 * 179.97438 * 5 2 1 34 34 H 1.09004 * 109.46801 * 299.72165 * 9 7 6 35 35 H 1.09000 * 109.47461 * 59.71633 * 9 7 6 36 36 H 1.08009 * 120.02646 * 359.97438 * 12 11 10 37 37 H 1.07997 * 119.96734 * 180.27414 * 13 12 11 38 38 H 1.08001 * 119.94186 * 179.70762 * 14 13 12 39 39 H 1.08999 * 109.47489 * 125.02796 * 16 15 14 40 40 H 0.96701 * 113.99707 * 59.99682 * 17 16 15 41 41 H 1.08003 * 120.02893 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 2.0000 -2.2472 1.5212 7 6 2.5943 -3.1036 0.6755 8 8 3.4890 -2.7219 -0.0412 9 6 2.1411 -4.5395 0.6152 10 8 2.9161 -5.2433 -0.3573 11 6 2.6327 -6.5603 -0.5369 12 6 1.6332 -7.1641 0.2117 13 6 1.3431 -8.5017 0.0233 14 6 2.0560 -9.2411 -0.9020 15 6 3.0564 -8.6427 -1.6459 16 6 3.8311 -9.4516 -2.6541 17 8 5.1978 -9.5395 -2.2455 18 14 3.1053 -11.1637 -2.7666 19 1 1.6852 -11.0724 -3.1912 20 1 3.8692 -11.9609 -3.7597 21 1 3.1833 -11.8227 -1.4381 22 6 3.3464 -7.3044 -1.4652 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 3.5739 1.7565 0.0005 27 1 2.1206 2.2703 -0.8900 28 1 2.1206 2.2703 0.8901 29 1 2.1207 -1.9058 -1.5211 30 1 2.1207 -0.3644 -2.4111 31 1 3.5740 -0.8778 -1.5213 32 1 2.1206 -0.3643 2.4112 33 1 3.5740 -0.8786 1.5209 34 1 2.2752 -5.0042 1.5921 35 1 1.0879 -4.5769 0.3368 36 1 1.0794 -6.5880 0.9385 37 1 0.5620 -8.9712 0.6028 38 1 1.8309 -10.2877 -1.0445 39 1 3.7740 -8.9679 -3.6292 40 1 5.3244 -9.9603 -1.3841 41 1 4.1276 -6.8374 -2.0467 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4860304_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:45:26 Heat of formation + Delta-G solvation = -148.444644 kcal Electronic energy + Delta-G solvation = -21860.589115 eV Core-core repulsion = 18444.653444 eV Total energy + Delta-G solvation = -3415.935671 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 298.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.86907 -41.08220 -39.19340 -37.54837 -37.17587 -32.50797 -31.93261 -30.21020 -29.53180 -28.42906 -28.37000 -27.52361 -26.71926 -23.74351 -22.96921 -21.69132 -19.49694 -18.70661 -18.09570 -18.02743 -17.76708 -17.16986 -16.65952 -16.58800 -16.11988 -15.54851 -14.97198 -14.85121 -14.57834 -14.41980 -14.15839 -14.11326 -13.91385 -13.80520 -13.56716 -13.41794 -13.25706 -13.07802 -13.03590 -12.95520 -12.62749 -12.57702 -12.21205 -12.09172 -11.98098 -11.60807 -11.47642 -10.86927 -10.79008 -10.47112 -10.43488 -9.95433 -9.34345 0.17552 0.34385 0.98068 1.00883 1.18635 1.47975 1.54867 1.55196 1.85987 1.89805 1.93657 2.50896 2.54211 2.63512 3.51913 3.56694 3.67869 3.82478 3.95499 3.96174 4.06976 4.19298 4.22331 4.34494 4.53868 4.65310 4.67610 4.71396 4.75455 4.79271 4.80261 4.82608 4.86310 4.96009 5.19279 5.22469 5.32448 5.41198 5.51499 5.58988 5.61840 5.63897 6.22693 6.62778 6.68360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.451 4.451 2 Si 1.062 2.938 3 C -0.453 4.453 4 C -0.459 4.459 5 C -0.255 4.255 6 O -0.330 6.330 7 C 0.443 3.557 8 O -0.503 6.503 9 C 0.062 3.938 10 O -0.320 6.320 11 C 0.115 3.885 12 C -0.203 4.203 13 C -0.072 4.072 14 C -0.169 4.169 15 C -0.084 4.084 16 C -0.090 4.090 17 O -0.554 6.554 18 Si 0.996 3.004 19 H -0.254 1.254 20 H -0.279 1.279 21 H -0.245 1.245 22 C -0.141 4.141 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.389 0.611 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.431 -0.545 4.302 6.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.559 4.559 2 Si 1.254 2.746 3 C -0.562 4.562 4 C -0.564 4.564 5 C -0.372 4.372 6 O -0.246 6.246 7 C 0.285 3.715 8 O -0.392 6.392 9 C -0.013 4.013 10 O -0.234 6.234 11 C 0.071 3.929 12 C -0.221 4.221 13 C -0.089 4.089 14 C -0.186 4.186 15 C -0.084 4.084 16 C -0.199 4.199 17 O -0.362 6.362 18 Si 0.819 3.181 19 H -0.177 1.177 20 H -0.204 1.204 21 H -0.169 1.169 22 C -0.160 4.160 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.137 0.863 40 H 0.238 0.762 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.238 -0.835 3.414 6.308 hybrid contribution 0.569 0.398 0.366 0.785 sum -4.669 -0.437 3.779 6.023 Atomic orbital electron populations 1.26108 1.19810 1.04756 1.05272 0.78763 0.66964 0.65956 0.62930 1.26103 1.06368 1.18164 1.05528 1.26606 1.05895 1.07069 1.16819 1.28724 1.05215 0.82931 1.20380 1.86363 1.58779 1.21893 1.57534 1.23419 0.80862 0.89295 0.77900 1.90731 1.29539 1.78293 1.40591 1.22194 0.97725 0.86004 0.95425 1.86049 1.59110 1.20518 1.57769 1.19134 0.95607 0.82052 0.96125 1.21638 0.99992 0.97344 1.03137 1.21282 0.98436 0.92988 0.96229 1.21253 0.97773 1.00943 0.98666 1.20211 0.96902 0.93487 0.97818 1.25235 0.85602 1.10075 0.99000 1.86505 1.23268 1.84178 1.42207 0.85024 0.78752 0.73656 0.80629 1.17746 1.20423 1.16876 1.20313 1.01777 0.93644 1.00227 0.89908 0.90808 0.91315 0.91356 0.90534 0.89796 0.93158 0.91726 0.92452 0.84415 0.90820 0.84856 0.84661 0.82229 0.82339 0.84527 0.86310 0.76153 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.64 8.65 113.37 0.98 2.62 16 2 Si 1.06 -3.45 12.12 68.60 0.83 -2.62 16 3 C -0.45 1.53 8.65 113.37 0.98 2.51 16 4 C -0.46 -2.09 7.10 113.37 0.81 -1.28 16 5 C -0.26 0.46 5.40 113.37 0.61 1.07 16 6 O -0.33 -0.22 9.92 -51.41 -0.51 -0.73 16 7 C 0.44 1.70 6.82 71.23 0.49 2.18 16 8 O -0.50 -5.48 12.17 28.37 0.35 -5.14 16 9 C 0.06 -0.10 5.33 71.23 0.38 0.28 16 10 O -0.32 -1.93 9.67 -73.41 -0.71 -2.64 16 11 C 0.12 0.45 6.69 22.51 0.15 0.60 16 12 C -0.20 0.40 9.04 22.37 0.20 0.60 16 13 C -0.07 0.21 10.04 22.25 0.22 0.44 16 14 C -0.17 0.14 8.67 22.28 0.19 0.34 16 15 C -0.08 -0.17 5.35 -19.88 -0.11 -0.28 16 16 C -0.09 -0.05 2.80 71.24 0.20 0.15 16 17 O -0.55 -1.39 12.83 -148.98 -1.91 -3.30 16 18 Si 1.00 -1.61 25.14 68.60 1.72 0.11 16 19 H -0.25 0.28 7.11 99.48 0.71 0.98 16 20 H -0.28 -0.65 7.11 99.48 0.71 0.06 16 21 H -0.25 0.67 7.04 99.48 0.70 1.37 16 22 C -0.14 -0.78 9.62 22.36 0.22 -0.57 16 23 H 0.08 -0.45 7.96 -2.39 -0.02 -0.47 16 24 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 25 H 0.07 -0.20 7.96 -2.38 -0.02 -0.22 16 26 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 27 H 0.08 -0.24 7.96 -2.39 -0.02 -0.26 16 28 H 0.08 -0.46 7.96 -2.38 -0.02 -0.48 16 29 H 0.05 0.37 6.28 -2.39 -0.02 0.35 16 30 H 0.06 0.21 7.96 -2.38 -0.02 0.19 16 31 H 0.06 0.48 7.43 -2.39 -0.02 0.46 16 32 H 0.14 -0.98 7.96 -2.39 -0.02 -1.00 16 33 H 0.07 0.03 7.52 -2.39 -0.02 0.01 16 34 H 0.13 -0.98 7.65 -2.38 -0.02 -1.00 16 35 H 0.14 -1.05 7.68 -2.39 -0.02 -1.07 16 36 H 0.16 -1.34 6.30 -2.91 -0.02 -1.36 16 37 H 0.16 -1.38 8.06 -2.91 -0.02 -1.41 16 38 H 0.14 -0.56 4.86 -2.91 -0.01 -0.57 16 39 H 0.12 -0.01 7.96 -2.39 -0.02 -0.03 16 40 H 0.39 -1.72 8.70 -74.06 -0.64 -2.37 16 41 H 0.12 0.94 8.06 -2.91 -0.02 0.92 16 Total: 0.00 -18.18 341.45 6.22 -11.95 By element: Atomic # 1 Polarization: -7.44 SS G_CDS: 1.13 Total: -6.31 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: 5.32 Total: 8.68 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: -2.79 Total: -11.81 kcal Atomic # 14 Polarization: -5.07 SS G_CDS: 2.56 Total: -2.51 kcal Total: -18.18 6.22 -11.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4860304_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.491 kcal (2) G-P(sol) polarization free energy of solvation -18.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds