Wall clock time and date at job start Sat Mar 6 2021 08:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35986 * 117.00096 * 2 1 4 4 C 1.38669 * 120.00293 * 180.02562 * 3 2 1 5 5 C 1.38152 * 120.00007 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99838 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47614 * 254.97708 * 6 5 4 8 8 Si 1.86295 * 109.47246 * 14.98154 * 6 5 4 9 9 C 1.38677 * 120.00095 * 359.97438 * 5 4 3 10 10 O 1.35983 * 120.00045 * 180.02562 * 9 5 4 11 11 C 1.42899 * 117.00218 * 179.97438 * 10 9 5 12 12 C 1.50698 * 109.47372 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99804 * 0.02562 * 12 11 10 14 14 O 1.34231 * 120.00053 * 180.02562 * 12 11 10 15 15 C 1.45198 * 116.99983 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46884 * 179.97438 * 15 14 12 17 17 H 1.08990 * 112.85361 * 45.33205 * 16 15 14 18 18 C 1.53787 * 113.61270 * 176.52983 * 16 15 14 19 19 C 1.53778 * 87.08069 * 139.97924 * 18 16 15 20 20 H 1.08994 * 113.61959 * 89.11407 * 19 18 16 21 21 O 1.42905 * 113.61034 * 219.93576 * 19 18 16 22 22 C 1.53783 * 113.61182 * 274.13256 * 16 15 14 23 23 C 1.38714 * 120.00033 * 0.27594 * 9 5 4 24 24 C 1.38113 * 120.00055 * 359.44775 * 23 9 5 25 25 H 1.09003 * 109.46955 * 59.99992 * 1 2 3 26 26 H 1.09001 * 109.46658 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47147 * 300.00357 * 1 2 3 28 28 H 1.08004 * 119.99875 * 0.03794 * 4 3 2 29 29 H 1.09005 * 109.46969 * 134.97982 * 6 5 4 30 30 H 0.96697 * 114.00008 * 300.00438 * 7 6 5 31 31 H 1.48498 * 109.99868 * 298.67731 * 8 6 5 32 32 H 1.48498 * 110.00276 * 59.99451 * 8 6 5 33 33 H 1.09008 * 109.46611 * 59.99747 * 11 10 9 34 34 H 1.09001 * 109.47177 * 300.00705 * 11 10 9 35 35 H 1.09002 * 109.47379 * 59.99613 * 15 14 12 36 36 H 1.09001 * 109.46782 * 299.99696 * 15 14 12 37 37 H 1.09000 * 113.61079 * 254.52465 * 18 16 15 38 38 H 1.08993 * 113.61125 * 25.34288 * 18 16 15 39 39 H 0.96704 * 113.99471 * 180.02562 * 21 19 18 40 40 H 1.09003 * 113.61584 * 334.56887 * 22 16 15 41 41 H 1.09000 * 113.61286 * 105.47141 * 22 16 15 42 42 H 1.07997 * 120.00462 * 179.70198 * 23 9 5 43 43 H 1.07994 * 120.00772 * 180.25319 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4312 1.2843 -0.0005 5 6 4.0584 2.5152 0.0000 6 6 5.5633 2.5941 -0.0012 7 8 6.0219 2.9667 1.3000 8 14 6.2719 0.9326 -0.4572 9 6 3.3030 3.6783 0.0005 10 8 3.9204 4.8899 0.0005 11 6 3.0804 6.0460 0.0005 12 6 3.9346 7.2875 -0.0001 13 8 5.1390 7.1921 -0.0010 14 8 3.3573 8.4993 0.0003 15 6 4.2418 9.6508 -0.0009 16 6 3.4084 10.9340 -0.0009 17 1 2.5863 10.9047 0.7141 18 6 4.2525 12.2167 0.0831 19 6 3.2775 12.8311 -0.9350 20 1 2.4187 13.3211 -0.4765 21 8 3.9172 13.6421 -1.9227 22 6 2.9866 11.3946 -1.4062 23 6 1.9178 3.6056 0.0063 24 6 1.2908 2.3751 0.0000 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 4.0194 0.3785 -0.0016 29 1 5.8875 3.3392 -0.7278 30 1 5.6915 3.8234 1.6031 31 1 5.8634 -0.0857 0.5434 32 1 5.8025 0.5338 -1.8084 33 1 2.4511 6.0378 0.8906 34 1 2.4511 6.0379 -0.8894 35 1 4.8697 9.6258 -0.8916 36 1 4.8715 9.6261 0.8884 37 1 4.2217 12.6963 1.0615 38 1 5.2666 12.0978 -0.2982 39 1 3.3090 14.0316 -2.5657 40 1 3.6536 11.0509 -2.1969 41 1 1.9354 11.2114 -1.6285 42 1 1.3296 4.5113 0.0116 43 1 0.2123 2.3184 0.0004 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4974306_11354868.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:12:10 Heat of formation + Delta-G solvation = -177.461430 kcal Electronic energy + Delta-G solvation = -27189.640118 eV Core-core repulsion = 22975.987144 eV Total energy + Delta-G solvation = -4213.652974 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.138 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09816 -41.56308 -40.38926 -40.03431 -38.37567 -37.62355 -37.01931 -36.01124 -32.96584 -31.54544 -30.40367 -28.95690 -28.08478 -26.76546 -26.66540 -24.36046 -23.39381 -22.54915 -22.15729 -20.59124 -19.76067 -19.06301 -18.76206 -18.44831 -18.26756 -18.13712 -17.91748 -17.19570 -16.95382 -16.65170 -16.35259 -16.09817 -15.77281 -15.61665 -15.44890 -15.09615 -14.98323 -14.41039 -14.16325 -13.98234 -13.77769 -13.65163 -13.49861 -13.49436 -13.17505 -12.81887 -12.67610 -12.44495 -12.37436 -12.24161 -12.22123 -11.77502 -11.64291 -11.60175 -11.27833 -11.24094 -11.14052 -10.75118 -10.27028 -8.99082 -4.87472 -0.10065 0.16826 0.87730 0.93051 1.30832 1.58388 1.88905 2.18388 2.31614 2.39157 3.15206 3.35050 3.40485 3.45559 3.53001 3.57464 3.77701 3.81101 3.86136 3.92083 3.93707 3.96566 4.00195 4.08508 4.13500 4.17677 4.24353 4.32029 4.32746 4.36021 4.53478 4.63831 4.67020 4.73486 4.77899 4.83845 4.95966 4.97055 5.04822 5.09043 5.18120 5.24998 5.37725 5.96926 6.27511 6.50752 6.52440 6.87302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.341 6.341 3 C 0.091 3.909 4 C -0.142 4.142 5 C -0.115 4.115 6 C -0.086 4.086 7 O -0.544 6.544 8 Si 0.811 3.189 9 C 0.098 3.902 10 O -0.312 6.312 11 C 0.065 3.935 12 C 0.465 3.535 13 O -0.524 6.524 14 O -0.345 6.345 15 C 0.078 3.922 16 C -0.101 4.101 17 H 0.122 0.878 18 C -0.126 4.126 19 C 0.074 3.926 20 H 0.104 0.896 21 O -0.584 6.584 22 C -0.163 4.163 23 C -0.153 4.153 24 C -0.159 4.159 25 H 0.070 0.930 26 H 0.114 0.886 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.372 0.628 31 H -0.286 1.286 32 H -0.267 1.267 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.396 0.604 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.176 0.824 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 3.796 -0.703 8.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.256 6.256 3 C 0.046 3.954 4 C -0.160 4.160 5 C -0.116 4.116 6 C -0.193 4.193 7 O -0.350 6.350 8 Si 0.712 3.288 9 C 0.053 3.947 10 O -0.227 6.227 11 C -0.010 4.010 12 C 0.308 3.692 13 O -0.413 6.413 14 O -0.262 6.262 15 C 0.004 3.996 16 C -0.120 4.120 17 H 0.140 0.860 18 C -0.164 4.164 19 C 0.016 3.984 20 H 0.122 0.878 21 O -0.392 6.392 22 C -0.200 4.200 23 C -0.171 4.171 24 C -0.177 4.177 25 H 0.089 0.911 26 H 0.133 0.867 27 H 0.088 0.912 28 H 0.143 0.857 29 H 0.098 0.902 30 H 0.221 0.779 31 H -0.214 1.214 32 H -0.192 1.192 33 H 0.158 0.842 34 H 0.154 0.846 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.193 0.807 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -6.757 2.132 -0.632 7.114 hybrid contribution -1.807 1.227 -0.113 2.187 sum -8.564 3.359 -0.745 9.230 Atomic orbital electron populations 1.23398 0.75926 1.05749 1.02676 1.86085 1.23898 1.26636 1.88936 1.19007 0.91723 0.85641 0.99045 1.20157 0.92855 0.96892 1.06130 1.19548 0.96865 0.90470 1.04763 1.25383 0.91045 1.14289 0.88632 1.86664 1.73833 1.42332 1.32187 0.92471 0.90034 0.69849 0.76408 1.18593 0.91531 0.83694 1.00880 1.86007 1.35359 1.11684 1.89636 1.22208 0.91025 0.79331 1.08432 1.23397 0.87634 0.85739 0.72419 1.90745 1.17522 1.87670 1.45314 1.86422 1.41718 1.14350 1.83696 1.23238 0.91887 0.81680 1.02752 1.22361 0.99592 0.90423 0.99587 0.85975 1.23108 0.98987 0.94236 1.00040 1.23451 0.95986 0.89288 0.89719 0.87824 1.86492 1.39840 1.68376 1.44514 1.23783 1.02935 0.96933 0.96384 1.21485 0.92105 1.00151 1.03348 1.21446 1.01758 0.90647 1.03878 0.91103 0.86744 0.91162 0.85749 0.90161 0.77940 1.21384 1.19247 0.84249 0.84562 0.91549 0.90699 0.88998 0.90078 0.75415 0.90364 0.89534 0.80709 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 2 O -0.34 -1.97 10.50 -93.39 -0.98 -2.95 16 3 C 0.09 0.54 6.69 22.49 0.15 0.69 16 4 C -0.14 -1.28 8.59 22.35 0.19 -1.08 16 5 C -0.12 -0.87 5.28 -19.78 -0.10 -0.97 16 6 C -0.09 -0.61 2.33 71.24 0.17 -0.44 16 7 O -0.54 -4.74 12.65 -148.98 -1.89 -6.62 16 8 Si 0.81 4.00 30.40 68.60 2.09 6.09 16 9 C 0.10 0.32 6.62 22.49 0.15 0.47 16 10 O -0.31 -0.90 8.56 -74.28 -0.64 -1.53 16 11 C 0.07 -0.30 5.33 71.24 0.38 0.08 16 12 C 0.47 0.97 8.03 71.24 0.57 1.54 16 13 O -0.52 -5.59 16.25 28.41 0.46 -5.13 16 14 O -0.35 0.12 10.22 -51.42 -0.53 -0.40 16 15 C 0.08 -0.03 5.29 71.98 0.38 0.35 16 16 C -0.10 0.43 4.01 -10.26 -0.04 0.39 16 17 H 0.12 -0.85 8.14 -2.39 -0.02 -0.86 16 18 C -0.13 0.36 7.48 31.12 0.23 0.59 16 19 C 0.07 -0.26 5.21 31.18 0.16 -0.09 16 20 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 21 O -0.58 -0.12 13.68 -148.98 -2.04 -2.15 16 22 C -0.16 0.64 7.48 31.18 0.23 0.87 16 23 C -0.15 0.33 9.03 22.35 0.20 0.53 16 24 C -0.16 0.09 9.03 22.36 0.20 0.29 16 25 H 0.07 -0.47 7.66 -2.39 -0.02 -0.49 16 26 H 0.11 -0.74 8.14 -2.39 -0.02 -0.75 16 27 H 0.07 -0.46 7.66 -2.39 -0.02 -0.48 16 28 H 0.13 1.31 4.93 -2.91 -0.01 1.30 16 29 H 0.08 0.51 7.82 -2.38 -0.02 0.49 16 30 H 0.37 2.11 8.60 -74.06 -0.64 1.47 16 31 H -0.29 -3.02 6.81 99.48 0.68 -2.35 16 32 H -0.27 -2.00 7.11 99.48 0.71 -1.29 16 33 H 0.14 -1.50 7.65 -2.38 -0.02 -1.52 16 34 H 0.14 -1.40 7.67 -2.39 -0.02 -1.42 16 35 H 0.07 0.11 7.87 -2.39 -0.02 0.09 16 36 H 0.07 0.01 8.13 -2.39 -0.02 -0.01 16 37 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.08 0.01 8.10 -2.39 -0.02 -0.01 16 39 H 0.40 -3.17 9.12 -74.05 -0.68 -3.84 16 40 H 0.08 -0.08 7.92 -2.39 -0.02 -0.10 16 41 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.18 -1.83 6.29 -2.91 -0.02 -1.84 16 43 H 0.17 -1.14 6.29 -2.91 -0.02 -1.16 16 Total: 0.00 -23.25 362.81 0.23 -23.02 By element: Atomic # 1 Polarization: -14.32 SS G_CDS: -0.24 Total: -14.57 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 3.99 Total: 4.25 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -5.60 Total: -18.79 kcal Atomic # 14 Polarization: 4.00 SS G_CDS: 2.09 Total: 6.09 kcal Total: -23.25 0.23 -23.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4974306_11354868.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.438 kcal (2) G-P(sol) polarization free energy of solvation -23.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds