Wall clock time and date at job start Sat Mar 6 2021 07:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00251 * 2 1 4 4 C 1.38608 * 120.02634 * 180.02562 * 3 2 1 5 5 C 1.38656 * 119.88872 * 180.02562 * 4 3 2 6 6 O 1.35897 * 120.02631 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00152 * 359.97438 * 6 5 4 8 8 C 1.50706 * 109.46919 * 179.97438 * 7 6 5 9 9 O 1.20825 * 120.00056 * 359.97438 * 8 7 6 10 10 O 1.34224 * 119.99824 * 179.97438 * 8 7 6 11 11 C 1.45200 * 117.00283 * 179.97438 * 10 8 7 12 12 C 1.52993 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.08999 * 112.85462 * 314.66474 * 12 11 10 14 14 C 1.53783 * 113.61718 * 85.86312 * 12 11 10 15 15 C 1.53957 * 87.02135 * 139.94919 * 14 12 11 16 16 H 1.08998 * 113.53455 * 89.18724 * 15 14 12 17 17 O 1.42892 * 113.74560 * 220.05830 * 15 14 12 18 18 C 1.42896 * 114.00248 * 247.59929 * 17 15 14 19 19 C 1.53002 * 109.47287 * 59.99932 * 18 17 15 20 20 C 1.53004 * 109.47414 * 179.97438 * 18 17 15 21 21 C 1.52999 * 109.47142 * 300.00139 * 18 17 15 22 22 C 1.53781 * 87.11140 * 334.64154 * 15 14 12 23 23 C 1.38751 * 119.94568 * 0.02562 * 5 4 3 24 24 C 1.50704 * 119.97567 * 179.97438 * 23 5 4 25 25 O 1.42900 * 109.46861 * 75.01869 * 24 23 5 26 26 Si 1.86292 * 109.47289 * 195.02026 * 24 23 5 27 27 C 1.38202 * 120.05375 * 0.02562 * 23 5 4 28 28 C 1.38151 * 120.10743 * 0.26266 * 27 23 5 29 29 H 1.09000 * 109.46657 * 300.00505 * 1 2 3 30 30 H 1.08998 * 109.47011 * 59.99585 * 1 2 3 31 31 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.08001 * 120.05980 * 0.04910 * 4 3 2 33 33 H 1.08999 * 109.46846 * 299.99030 * 7 6 5 34 34 H 1.08997 * 109.47105 * 59.99672 * 7 6 5 35 35 H 1.09004 * 109.46844 * 300.00540 * 11 10 8 36 36 H 1.09001 * 109.46516 * 60.00052 * 11 10 8 37 37 H 1.08993 * 113.61696 * 254.52714 * 14 12 11 38 38 H 1.08999 * 113.60856 * 25.43656 * 14 12 11 39 39 H 1.08993 * 109.47210 * 59.99848 * 19 18 17 40 40 H 1.08994 * 109.47509 * 180.02562 * 19 18 17 41 41 H 1.09008 * 109.46911 * 300.00018 * 19 18 17 42 42 H 1.08994 * 109.46937 * 59.99853 * 20 18 17 43 43 H 1.09004 * 109.46791 * 179.97438 * 20 18 17 44 44 H 1.09000 * 109.47028 * 299.99707 * 20 18 17 45 45 H 1.09000 * 109.47561 * 59.99455 * 21 18 17 46 46 H 1.09003 * 109.47719 * 180.02562 * 21 18 17 47 47 H 1.09003 * 109.46820 * 299.99760 * 21 18 17 48 48 H 1.08997 * 113.61410 * 270.81047 * 22 15 14 49 49 H 1.08996 * 113.69552 * 139.92275 * 22 15 14 50 50 H 1.08999 * 109.46694 * 315.01971 * 24 23 5 51 51 H 0.96701 * 114.00172 * 60.00264 * 25 24 23 52 52 H 1.48503 * 110.00328 * 58.67822 * 26 24 23 53 53 H 1.48499 * 110.00166 * 180.02562 * 26 24 23 54 54 H 1.08002 * 119.94266 * 179.97438 * 27 23 5 55 55 H 1.08001 * 119.97065 * 179.72274 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4302 1.2840 -0.0005 5 6 4.0568 2.5209 0.0000 6 8 5.4137 2.5959 -0.0010 7 6 6.1317 1.3604 -0.0021 8 6 7.6126 1.6400 -0.0038 9 8 8.0120 2.7803 -0.0046 10 8 8.4877 0.6223 -0.0045 11 6 9.8985 0.9659 -0.0067 12 6 10.7353 -0.3148 -0.0079 13 1 10.3769 -1.0554 0.7071 14 6 10.9851 -0.8863 -1.4136 15 6 12.4171 -1.2009 -0.9437 16 1 12.5185 -2.1847 -0.4855 17 8 13.4165 -0.9433 -1.9319 18 6 14.0617 -2.1185 -2.4263 19 6 13.0217 -3.0407 -3.0658 20 6 15.1060 -1.7251 -3.4730 21 6 14.7479 -2.8484 -1.2698 22 6 12.2498 -0.0612 0.0751 23 6 3.2972 3.6821 0.0016 24 6 3.9775 5.0268 0.0028 25 8 4.5027 5.2960 -1.2987 26 14 2.7444 6.3463 0.4600 27 6 1.9173 3.6065 0.0032 28 6 1.2907 2.3753 0.0087 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0197 0.3791 -0.0018 33 1 5.8708 0.7878 0.8879 34 1 5.8692 0.7884 -0.8921 35 1 10.1285 1.5507 -0.8974 36 1 10.1310 1.5516 0.8826 37 1 10.3926 -1.7738 -1.6357 38 1 10.9397 -0.1370 -2.2038 39 1 12.5329 -2.5208 -3.8896 40 1 13.5138 -3.9373 -3.4425 41 1 12.2774 -3.3210 -2.3203 42 1 15.8470 -1.0680 -3.0178 43 1 15.5985 -2.6217 -3.8497 44 1 14.6168 -1.2055 -4.2969 45 1 14.0037 -3.1287 -0.5243 46 1 15.2405 -3.7446 -1.6469 47 1 15.4889 -2.1914 -0.8142 48 1 12.5508 0.9141 -0.3075 49 1 12.6766 -0.2821 1.0534 50 1 4.7905 5.0220 0.7288 51 1 3.8336 5.3154 -1.9966 52 1 2.1672 6.0604 1.7980 53 1 3.4028 7.6773 0.4641 54 1 1.3278 4.5115 0.0049 55 1 0.2122 2.3188 0.0145 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4974316_14598394.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:42:57 Heat of formation + Delta-G solvation = -176.166232 kcal Electronic energy + Delta-G solvation = -35002.741074 eV Core-core repulsion = 30166.993789 eV Total energy + Delta-G solvation = -4835.747286 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.07792 -41.53287 -40.82988 -40.05421 -38.71062 -38.33572 -37.40962 -36.93158 -33.93591 -32.32715 -31.73652 -30.53495 -29.10689 -28.37472 -28.35614 -28.22098 -26.67113 -26.12926 -24.31745 -23.48411 -22.54498 -22.14407 -20.88810 -20.63703 -20.05539 -18.75395 -18.51906 -18.18713 -18.05413 -17.73097 -17.23879 -17.17956 -17.00768 -16.59629 -16.49381 -16.45756 -15.99007 -15.92578 -15.68631 -15.22858 -15.06517 -14.78356 -14.59989 -14.47158 -14.31787 -14.11406 -13.87310 -13.54301 -13.51417 -13.40918 -13.33053 -13.23461 -13.12533 -13.00718 -12.80701 -12.66803 -12.57002 -12.46203 -12.27840 -12.25106 -12.06726 -11.93919 -11.89352 -11.83537 -11.65853 -11.55695 -11.37847 -11.20876 -10.38164 -10.37309 -9.73589 -9.13327 -5.03761 0.18875 0.26689 0.87043 0.88509 1.31032 1.64555 1.98333 2.19278 2.37533 2.55319 2.70619 3.25277 3.44396 3.51568 3.58634 3.71450 3.72921 3.76756 3.80336 3.85268 3.88299 3.90473 3.96376 4.05483 4.06650 4.09882 4.13786 4.14216 4.29088 4.32666 4.38424 4.44402 4.45165 4.46503 4.59338 4.61992 4.66480 4.73720 4.74344 4.77660 4.80503 4.82755 4.90063 4.93116 4.98102 4.99812 5.09037 5.10629 5.18009 5.21368 5.25986 5.29884 5.32685 5.37422 5.44723 6.04701 6.35522 6.40696 6.47676 6.85127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.253 4.253 5 C 0.174 3.826 6 O -0.307 6.307 7 C 0.064 3.936 8 C 0.465 3.535 9 O -0.526 6.526 10 O -0.344 6.344 11 C 0.078 3.922 12 C -0.100 4.100 13 H 0.121 0.879 14 C -0.149 4.149 15 C 0.061 3.939 16 H 0.106 0.894 17 O -0.383 6.383 18 C 0.097 3.903 19 C -0.173 4.173 20 C -0.140 4.140 21 C -0.176 4.176 22 C -0.127 4.127 23 C -0.200 4.200 24 C -0.070 4.070 25 O -0.558 6.558 26 Si 0.795 3.205 27 C -0.031 4.031 28 C -0.234 4.234 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.152 0.848 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.082 0.918 51 H 0.391 0.609 52 H -0.279 1.279 53 H -0.304 1.304 54 H 0.168 0.832 55 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.059 -6.817 -0.685 9.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.244 6.244 3 C 0.118 3.882 4 C -0.272 4.272 5 C 0.128 3.872 6 O -0.221 6.221 7 C -0.011 4.011 8 C 0.308 3.692 9 O -0.414 6.414 10 O -0.261 6.261 11 C 0.005 3.995 12 C -0.119 4.119 13 H 0.139 0.861 14 C -0.186 4.186 15 C 0.003 3.997 16 H 0.124 0.876 17 O -0.303 6.303 18 C 0.058 3.942 19 C -0.231 4.231 20 C -0.197 4.197 21 C -0.234 4.234 22 C -0.164 4.164 23 C -0.201 4.201 24 C -0.178 4.178 25 O -0.366 6.366 26 Si 0.699 3.301 27 C -0.048 4.048 28 C -0.253 4.253 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.170 0.830 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.100 0.900 51 H 0.241 0.759 52 H -0.206 1.206 53 H -0.233 1.233 54 H 0.185 0.815 55 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.282 -5.712 0.130 7.781 hybrid contribution 0.742 -0.379 0.276 0.878 sum -4.540 -6.091 0.406 7.608 Atomic orbital electron populations 1.23421 0.75875 1.05731 1.02839 1.86065 1.23880 1.26593 1.87896 1.18870 0.91545 0.85137 0.92680 1.20560 0.93676 0.97318 1.15670 1.18542 0.80959 0.93437 0.94267 1.86142 1.16208 1.31132 1.88600 1.22186 0.84392 0.86415 1.08129 1.23398 0.90139 0.83234 0.72385 1.90746 1.80834 1.24478 1.45364 1.86426 1.18819 1.37198 1.83666 1.23248 0.75161 0.98429 1.02676 1.22345 0.93876 0.96155 0.99491 0.86097 1.23632 0.96792 1.01901 0.96305 1.23695 0.87145 0.99219 0.89600 0.87596 1.88019 1.53128 1.31921 1.57210 1.21695 0.92733 0.85587 0.94145 1.22440 0.99211 1.00005 1.01406 1.21799 0.97651 1.02619 0.97655 1.22446 1.01250 1.01275 0.98399 1.23227 0.93330 0.99807 1.00040 1.19748 0.93838 0.93908 1.12643 1.25152 1.04482 0.99628 0.88526 1.86538 1.39333 1.93681 1.17007 0.94085 0.80375 0.73032 0.82564 1.20873 0.91431 0.98669 0.93810 1.21473 1.01875 0.91108 1.10826 0.91241 0.90972 0.86669 0.83023 0.84710 0.84802 0.91590 0.90787 0.89949 0.90489 0.92555 0.90540 0.91820 0.92401 0.89660 0.92539 0.91606 0.90376 0.92289 0.89830 0.89006 0.90044 0.75930 1.20592 1.23280 0.81495 0.81989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.01 16 2 O -0.33 -0.19 10.49 -92.48 -0.97 -1.16 16 3 C 0.16 0.21 6.68 22.49 0.15 0.36 16 4 C -0.25 -0.60 8.97 22.46 0.20 -0.40 16 5 C 0.17 0.98 6.66 22.49 0.15 1.13 16 6 O -0.31 -2.73 8.99 -73.32 -0.66 -3.39 16 7 C 0.06 0.11 5.33 71.24 0.38 0.49 16 8 C 0.47 3.56 8.03 71.24 0.57 4.13 16 9 O -0.53 -8.78 16.25 28.40 0.46 -8.32 16 10 O -0.34 -1.43 10.22 -51.36 -0.52 -1.96 16 11 C 0.08 0.25 5.29 71.98 0.38 0.63 16 12 C -0.10 0.12 4.01 -10.27 -0.04 0.08 16 13 H 0.12 -0.47 8.14 -2.39 -0.02 -0.49 16 14 C -0.15 0.01 7.48 31.18 0.23 0.24 16 15 C 0.06 0.00 2.82 31.18 0.09 0.09 16 16 H 0.11 -0.31 5.54 -2.39 -0.01 -0.33 16 17 O -0.38 -1.69 10.00 -148.98 -1.49 -3.18 16 18 C 0.10 0.07 1.11 -10.79 -0.01 0.05 16 19 C -0.17 0.22 8.38 71.98 0.60 0.83 16 20 C -0.14 -0.05 8.84 71.98 0.64 0.59 16 21 C -0.18 0.32 8.38 71.98 0.60 0.92 16 22 C -0.13 0.09 7.48 31.12 0.23 0.32 16 23 C -0.20 -0.76 5.27 -19.75 -0.10 -0.86 16 24 C -0.07 -0.39 2.37 71.24 0.17 -0.22 16 25 O -0.56 -4.05 12.88 -148.98 -1.92 -5.97 16 26 Si 0.79 0.17 29.91 68.60 2.05 2.22 16 27 C -0.03 0.06 8.65 22.24 0.19 0.25 16 28 C -0.23 0.55 9.04 22.38 0.20 0.75 16 29 H 0.07 -0.62 7.64 -2.39 -0.02 -0.64 16 30 H 0.07 -0.67 7.68 -2.39 -0.02 -0.69 16 31 H 0.12 -1.11 8.14 -2.39 -0.02 -1.13 16 32 H 0.15 -0.21 6.30 -2.91 -0.02 -0.23 16 33 H 0.14 -0.55 7.66 -2.39 -0.02 -0.56 16 34 H 0.13 -0.48 7.66 -2.39 -0.02 -0.50 16 35 H 0.07 0.36 7.87 -2.39 -0.02 0.34 16 36 H 0.07 0.27 8.13 -2.39 -0.02 0.25 16 37 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 38 H 0.08 0.23 7.92 -2.39 -0.02 0.22 16 39 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.08 -0.26 8.14 -2.39 -0.02 -0.27 16 41 H 0.06 -0.15 7.02 -2.38 -0.02 -0.16 16 42 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.07 -0.21 6.24 -2.39 -0.01 -0.22 16 46 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 47 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.08 0.15 8.10 -2.39 -0.02 0.13 16 49 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 50 H 0.08 0.91 7.82 -2.39 -0.02 0.89 16 51 H 0.39 -1.06 8.70 -74.06 -0.64 -1.71 16 52 H -0.28 -1.08 7.11 99.48 0.71 -0.37 16 53 H -0.30 -2.58 7.11 99.48 0.71 -1.87 16 54 H 0.17 -1.43 5.12 -2.91 -0.01 -1.45 16 55 H 0.16 -1.31 6.29 -2.91 -0.02 -1.33 16 Total: 0.00 -25.41 442.84 2.99 -22.42 By element: Atomic # 1 Polarization: -11.36 SS G_CDS: 0.29 Total: -11.06 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 5.75 Total: 10.40 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -5.10 Total: -23.97 kcal Atomic # 14 Polarization: 0.17 SS G_CDS: 2.05 Total: 2.22 kcal Total: -25.41 2.99 -22.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4974316_14598394.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.744 kcal (2) G-P(sol) polarization free energy of solvation -25.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds