Wall clock time and date at job start Sat Mar 6 2021 08:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 117.00207 * 2 1 4 4 C 1.38610 * 120.02918 * 179.97438 * 3 2 1 5 5 C 1.38653 * 119.88970 * 180.02562 * 4 3 2 6 6 O 1.35905 * 120.02916 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00256 * 359.97438 * 8 7 6 10 10 O 1.34234 * 119.99915 * 180.02562 * 8 7 6 11 11 C 1.45200 * 117.00183 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47568 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46989 * 54.99382 * 12 11 10 14 14 C 1.52996 * 109.47484 * 175.00008 * 12 11 10 15 15 C 1.53000 * 109.46972 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47042 * 299.99263 * 15 14 12 17 17 H 1.09002 * 109.47765 * 300.00779 * 16 15 14 18 18 O 1.42897 * 109.47210 * 180.02562 * 16 15 14 19 19 C 1.53007 * 109.46903 * 60.00285 * 16 15 14 20 20 C 1.52992 * 109.47200 * 300.00127 * 19 16 15 21 21 C 1.38755 * 119.94856 * 0.25420 * 5 4 3 22 22 C 1.50693 * 119.97477 * 179.74642 * 21 5 4 23 23 O 1.42896 * 109.47605 * 284.99765 * 22 21 5 24 24 Si 1.86302 * 109.47193 * 164.99766 * 22 21 5 25 25 C 1.38197 * 120.04809 * 359.48726 * 21 5 4 26 26 C 1.38151 * 120.11323 * 0.51570 * 25 21 5 27 27 H 1.08997 * 109.46716 * 59.99974 * 1 2 3 28 28 H 1.08998 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47239 * 299.99769 * 1 2 3 30 30 H 1.07994 * 120.05330 * 0.04273 * 4 3 2 31 31 H 1.08998 * 109.47043 * 300.00197 * 7 6 5 32 32 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 33 33 H 1.09005 * 109.46884 * 299.99982 * 11 10 8 34 34 H 1.08993 * 109.47112 * 59.99347 * 11 10 8 35 35 H 1.09000 * 109.46980 * 299.99947 * 14 12 11 36 36 H 1.08994 * 109.47027 * 59.99584 * 14 12 11 37 37 H 1.08994 * 109.47618 * 59.99904 * 15 14 12 38 38 H 1.09007 * 109.46612 * 179.97438 * 15 14 12 39 39 H 0.96701 * 114.00424 * 180.02562 * 18 16 15 40 40 H 1.09008 * 109.46512 * 60.00186 * 19 16 15 41 41 H 1.09000 * 109.47248 * 179.97438 * 19 16 15 42 42 H 1.08994 * 109.47202 * 299.99572 * 20 19 16 43 43 H 1.09005 * 109.47290 * 179.97438 * 20 19 16 44 44 H 1.09003 * 109.47505 * 44.99921 * 22 21 5 45 45 H 0.96703 * 113.99737 * 300.00840 * 23 22 21 46 46 H 1.48497 * 110.00189 * 180.02562 * 24 22 21 47 47 H 1.48505 * 110.00019 * 301.32048 * 24 22 21 48 48 H 1.08008 * 119.94314 * 180.25485 * 25 21 5 49 49 H 1.07997 * 119.97612 * 179.72136 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4302 1.2840 0.0005 5 6 4.0567 2.5209 0.0011 6 8 5.4137 2.5960 0.0021 7 6 6.1317 1.3604 0.0021 8 6 7.6125 1.6401 0.0027 9 8 8.0120 2.7803 0.0026 10 8 8.4877 0.6223 0.0022 11 6 9.8984 0.9659 0.0034 12 6 10.7354 -0.3148 0.0020 13 1 10.4411 -0.9402 -0.8408 14 6 12.2174 0.0445 -0.1224 15 6 13.0542 -1.2363 -0.1245 16 6 12.8224 -1.9990 1.1814 17 1 13.1167 -1.3740 2.0245 18 8 13.6045 -3.1950 1.1798 19 6 11.3404 -2.3583 1.3060 20 6 10.5035 -1.0776 1.3079 21 6 3.2972 3.6821 0.0064 22 6 3.9775 5.0267 0.0128 23 8 4.5035 5.2884 1.3154 24 14 2.7440 6.3489 -0.4359 25 6 1.9173 3.6064 0.0005 26 6 1.2906 2.3752 0.0000 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0197 0.3791 0.0003 31 1 5.8693 0.7877 0.8915 32 1 5.8706 0.7886 -0.8884 33 1 10.1303 1.5521 -0.8859 34 1 10.1292 1.5503 0.8940 35 1 12.3827 0.5876 -1.0530 36 1 12.5116 0.6699 0.7204 37 1 12.7599 -1.8614 -0.9675 38 1 14.1101 -0.9803 -0.2136 39 1 13.5066 -3.7301 1.9793 40 1 11.0461 -2.9835 0.4629 41 1 11.1752 -2.9021 2.2361 42 1 10.7978 -0.4525 2.1509 43 1 9.4476 -1.3336 1.3962 44 1 4.7901 5.0263 -0.7138 45 1 3.8348 5.3035 2.0138 46 1 3.4027 7.6798 -0.4337 47 1 2.1661 6.0709 -1.7753 48 1 1.3277 4.5114 0.0005 49 1 0.2122 2.3187 -0.0001 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4974316_16737258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:39:30 Heat of formation + Delta-G solvation = -217.768427 kcal Electronic energy + Delta-G solvation = -31278.581417 eV Core-core repulsion = 26752.105363 eV Total energy + Delta-G solvation = -4526.476054 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98013 -41.43034 -40.26515 -39.92708 -38.44448 -37.64359 -36.88593 -36.56546 -32.37266 -32.19544 -31.92342 -31.47611 -29.83453 -28.54898 -26.61531 -26.10086 -24.06389 -23.80549 -22.56011 -22.43356 -21.91208 -20.95300 -20.05819 -18.66774 -18.37285 -18.21502 -18.06246 -17.92717 -17.23169 -17.20426 -17.02250 -16.69788 -16.47257 -16.33499 -15.85224 -15.56035 -15.38415 -15.20547 -15.10211 -14.77570 -14.45372 -14.34405 -14.09759 -13.77720 -13.75026 -13.49617 -13.44854 -13.32460 -13.27397 -13.09910 -12.68382 -12.56893 -12.22928 -12.19730 -12.08253 -11.93975 -11.79978 -11.76682 -11.71202 -11.60420 -11.40590 -11.18591 -10.77074 -10.26929 -9.75279 -9.13497 -5.00030 0.16378 0.26936 0.94730 1.08457 1.37137 1.69655 2.05449 2.10202 2.38570 2.53800 3.09500 3.35228 3.52617 3.59030 3.63974 3.64994 3.68832 3.76373 3.79069 3.84259 3.97461 3.98136 4.00614 4.07465 4.12450 4.18955 4.20335 4.26049 4.28286 4.33464 4.35702 4.37195 4.40181 4.49492 4.51866 4.67857 4.69900 4.85202 4.96192 4.97725 4.98180 5.06654 5.06792 5.17561 5.21299 5.22603 5.27549 5.37428 5.39209 6.03917 6.27544 6.65575 6.67255 6.76118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.175 3.825 4 C -0.246 4.246 5 C 0.192 3.808 6 O -0.278 6.278 7 C 0.065 3.935 8 C 0.464 3.536 9 O -0.478 6.478 10 O -0.352 6.352 11 C 0.073 3.927 12 C -0.089 4.089 13 H 0.087 0.913 14 C -0.111 4.111 15 C -0.111 4.111 16 C 0.102 3.898 17 H 0.055 0.945 18 O -0.569 6.569 19 C -0.152 4.152 20 C -0.113 4.113 21 C -0.184 4.184 22 C -0.052 4.052 23 O -0.533 6.533 24 Si 0.680 3.320 25 C -0.034 4.034 26 C -0.237 4.237 27 H 0.059 0.941 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.379 0.621 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.373 0.627 46 H -0.254 1.254 47 H -0.257 1.257 48 H 0.140 0.860 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.254 -3.201 2.264 6.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.129 3.871 4 C -0.266 4.266 5 C 0.146 3.854 6 O -0.190 6.190 7 C -0.011 4.011 8 C 0.304 3.696 9 O -0.362 6.362 10 O -0.269 6.269 11 C 0.000 4.000 12 C -0.107 4.107 13 H 0.105 0.895 14 C -0.148 4.148 15 C -0.149 4.149 16 C 0.044 3.956 17 H 0.073 0.927 18 O -0.375 6.375 19 C -0.190 4.190 20 C -0.150 4.150 21 C -0.185 4.185 22 C -0.163 4.163 23 O -0.338 6.338 24 Si 0.582 3.418 25 C -0.051 4.051 26 C -0.256 4.256 27 H 0.078 0.922 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.158 0.842 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.226 0.774 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.130 0.870 45 H 0.220 0.780 46 H -0.179 1.179 47 H -0.182 1.182 48 H 0.157 0.843 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.346 -1.977 0.768 4.836 hybrid contribution 0.003 -0.744 0.336 0.816 sum -4.343 -2.721 1.104 5.243 Atomic orbital electron populations 1.23158 0.77522 1.04496 1.01798 1.86086 1.22077 1.26577 1.87929 1.18674 0.91411 0.84459 0.92578 1.20418 0.93088 0.97340 1.15716 1.18327 0.81345 0.92580 0.93178 1.86189 1.15280 1.29445 1.88134 1.21929 0.86496 0.86886 1.05799 1.22800 0.88990 0.83799 0.74010 1.90767 1.79969 1.22647 1.42853 1.86406 1.18541 1.37760 1.84210 1.23239 0.75501 0.98018 1.03261 1.21284 0.94229 0.95208 1.00017 0.89487 1.21478 0.92615 0.97567 1.03174 1.21437 1.00683 0.95659 0.97072 1.21851 0.89541 0.86140 0.98118 0.92680 1.86519 1.68986 1.36379 1.45608 1.22276 0.95615 0.98213 1.02860 1.21540 1.00709 0.96062 0.96721 1.19598 0.92850 0.94446 1.11627 1.24858 1.04555 0.97673 0.89221 1.86592 1.37587 1.93697 1.15909 0.95303 0.83110 0.78019 0.85355 1.20594 0.92252 0.97400 0.94896 1.21154 1.00585 0.91726 1.12139 0.92228 0.87844 0.92135 0.84193 0.87217 0.87339 0.90636 0.90638 0.90615 0.91101 0.90895 0.90734 0.77368 0.90884 0.91447 0.91623 0.90687 0.86955 0.78026 1.17878 1.18161 0.84290 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.07 9.81 101.05 0.99 0.92 16 2 O -0.31 -0.20 10.49 -19.40 -0.20 -0.41 16 3 C 0.17 0.15 6.68 -39.24 -0.26 -0.11 16 4 C -0.25 -0.24 8.97 -39.29 -0.35 -0.59 16 5 C 0.19 0.41 6.66 -39.24 -0.26 0.15 16 6 O -0.28 -0.90 8.99 -39.39 -0.35 -1.25 16 7 C 0.07 0.01 5.33 36.00 0.19 0.20 16 8 C 0.46 1.15 8.03 36.00 0.29 1.44 16 9 O -0.48 -3.05 16.25 -25.48 -0.41 -3.47 16 10 O -0.35 -0.35 9.76 -39.27 -0.38 -0.74 16 11 C 0.07 0.01 4.84 37.16 0.18 0.19 16 12 C -0.09 0.11 2.43 -90.62 -0.22 -0.11 16 13 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 14 C -0.11 0.17 5.20 -26.73 -0.14 0.03 16 15 C -0.11 0.04 5.57 -26.73 -0.15 -0.10 16 16 C 0.10 -0.04 3.47 -26.73 -0.09 -0.13 16 17 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 18 O -0.57 -0.54 13.32 -35.23 -0.47 -1.01 16 19 C -0.15 0.19 5.55 -26.73 -0.15 0.04 16 20 C -0.11 0.15 5.10 -26.73 -0.14 0.01 16 21 C -0.18 -0.26 5.28 -104.45 -0.55 -0.81 16 22 C -0.05 -0.10 2.37 36.00 0.09 -0.01 16 23 O -0.53 -1.36 12.88 -35.23 -0.45 -1.82 16 24 Si 0.68 -0.07 29.91 -169.99 -5.08 -5.16 16 25 C -0.03 0.02 8.65 -39.63 -0.34 -0.32 16 26 C -0.24 0.13 9.04 -39.41 -0.36 -0.23 16 27 H 0.06 -0.21 7.66 -51.93 -0.40 -0.61 16 28 H 0.10 -0.43 8.14 -51.93 -0.42 -0.85 16 29 H 0.06 -0.23 7.66 -51.93 -0.40 -0.63 16 30 H 0.14 -0.11 6.30 -52.49 -0.33 -0.44 16 31 H 0.11 -0.24 7.66 -51.93 -0.40 -0.64 16 32 H 0.11 -0.24 7.66 -51.93 -0.40 -0.64 16 33 H 0.08 0.02 8.13 -51.93 -0.42 -0.40 16 34 H 0.08 0.03 8.13 -51.93 -0.42 -0.40 16 35 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 36 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 37 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 38 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 39 H 0.38 -1.10 9.08 45.56 0.41 -0.69 16 40 H 0.07 -0.03 8.14 -51.92 -0.42 -0.46 16 41 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 42 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 43 H 0.07 -0.08 7.82 -51.93 -0.41 -0.48 16 44 H 0.11 0.42 7.82 -51.93 -0.41 0.01 16 45 H 0.37 -0.73 8.70 45.56 0.40 -0.34 16 46 H -0.25 -0.85 7.11 56.52 0.40 -0.45 16 47 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 48 H 0.14 -0.46 5.11 -52.48 -0.27 -0.73 16 49 H 0.14 -0.38 6.29 -52.49 -0.33 -0.72 16 LS Contribution 398.27 15.07 6.00 6.00 Total: 0.00 -10.43 398.27 -9.43 -19.86 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: -6.79 Total: -12.58 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.27 Total: 0.56 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -2.28 Total: -8.69 kcal Atomic # 14 Polarization: -0.07 SS G_CDS: -5.08 Total: -5.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -10.43 -9.43 -19.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4974316_16737258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -197.908 kcal (2) G-P(sol) polarization free energy of solvation -10.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds