Wall clock time and date at job start Sat Mar 6 2021 08:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35893 * 117.00207 * 2 1 4 4 C 1.38610 * 120.02918 * 179.97438 * 3 2 1 5 5 C 1.38653 * 119.88970 * 180.02562 * 4 3 2 6 6 O 1.35905 * 120.02916 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99604 * 0.02562 * 6 5 4 8 8 C 1.50694 * 109.46937 * 179.97438 * 7 6 5 9 9 O 1.20824 * 120.00256 * 359.97438 * 8 7 6 10 10 O 1.34234 * 119.99915 * 180.02562 * 8 7 6 11 11 C 1.45200 * 117.00183 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47568 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.46989 * 54.99382 * 12 11 10 14 14 C 1.52996 * 109.47484 * 175.00008 * 12 11 10 15 15 C 1.53000 * 109.46972 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47042 * 299.99263 * 15 14 12 17 17 H 1.09002 * 109.47765 * 300.00779 * 16 15 14 18 18 O 1.42897 * 109.47210 * 180.02562 * 16 15 14 19 19 C 1.53007 * 109.46903 * 60.00285 * 16 15 14 20 20 C 1.52992 * 109.47200 * 300.00127 * 19 16 15 21 21 C 1.38755 * 119.94856 * 0.25420 * 5 4 3 22 22 C 1.50693 * 119.97477 * 179.74642 * 21 5 4 23 23 O 1.42896 * 109.47605 * 284.99765 * 22 21 5 24 24 Si 1.86302 * 109.47193 * 164.99766 * 22 21 5 25 25 C 1.38197 * 120.04809 * 359.48726 * 21 5 4 26 26 C 1.38151 * 120.11323 * 0.51570 * 25 21 5 27 27 H 1.08997 * 109.46716 * 59.99974 * 1 2 3 28 28 H 1.08998 * 109.46849 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47239 * 299.99769 * 1 2 3 30 30 H 1.07994 * 120.05330 * 0.04273 * 4 3 2 31 31 H 1.08998 * 109.47043 * 300.00197 * 7 6 5 32 32 H 1.08999 * 109.47144 * 59.99795 * 7 6 5 33 33 H 1.09005 * 109.46884 * 299.99982 * 11 10 8 34 34 H 1.08993 * 109.47112 * 59.99347 * 11 10 8 35 35 H 1.09000 * 109.46980 * 299.99947 * 14 12 11 36 36 H 1.08994 * 109.47027 * 59.99584 * 14 12 11 37 37 H 1.08994 * 109.47618 * 59.99904 * 15 14 12 38 38 H 1.09007 * 109.46612 * 179.97438 * 15 14 12 39 39 H 0.96701 * 114.00424 * 180.02562 * 18 16 15 40 40 H 1.09008 * 109.46512 * 60.00186 * 19 16 15 41 41 H 1.09000 * 109.47248 * 179.97438 * 19 16 15 42 42 H 1.08994 * 109.47202 * 299.99572 * 20 19 16 43 43 H 1.09005 * 109.47290 * 179.97438 * 20 19 16 44 44 H 1.09003 * 109.47505 * 44.99921 * 22 21 5 45 45 H 0.96703 * 113.99737 * 300.00840 * 23 22 21 46 46 H 1.48497 * 110.00189 * 180.02562 * 24 22 21 47 47 H 1.48505 * 110.00019 * 301.32048 * 24 22 21 48 48 H 1.08008 * 119.94314 * 180.25485 * 25 21 5 49 49 H 1.07997 * 119.97612 * 179.72136 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4302 1.2840 0.0005 5 6 4.0567 2.5209 0.0011 6 8 5.4137 2.5960 0.0021 7 6 6.1317 1.3604 0.0021 8 6 7.6125 1.6401 0.0027 9 8 8.0120 2.7803 0.0026 10 8 8.4877 0.6223 0.0022 11 6 9.8984 0.9659 0.0034 12 6 10.7354 -0.3148 0.0020 13 1 10.4411 -0.9402 -0.8408 14 6 12.2174 0.0445 -0.1224 15 6 13.0542 -1.2363 -0.1245 16 6 12.8224 -1.9990 1.1814 17 1 13.1167 -1.3740 2.0245 18 8 13.6045 -3.1950 1.1798 19 6 11.3404 -2.3583 1.3060 20 6 10.5035 -1.0776 1.3079 21 6 3.2972 3.6821 0.0064 22 6 3.9775 5.0267 0.0128 23 8 4.5035 5.2884 1.3154 24 14 2.7440 6.3489 -0.4359 25 6 1.9173 3.6064 0.0005 26 6 1.2906 2.3752 0.0000 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 4.0197 0.3791 0.0003 31 1 5.8693 0.7877 0.8915 32 1 5.8706 0.7886 -0.8884 33 1 10.1303 1.5521 -0.8859 34 1 10.1292 1.5503 0.8940 35 1 12.3827 0.5876 -1.0530 36 1 12.5116 0.6699 0.7204 37 1 12.7599 -1.8614 -0.9675 38 1 14.1101 -0.9803 -0.2136 39 1 13.5066 -3.7301 1.9793 40 1 11.0461 -2.9835 0.4629 41 1 11.1752 -2.9021 2.2361 42 1 10.7978 -0.4525 2.1509 43 1 9.4476 -1.3336 1.3962 44 1 4.7901 5.0263 -0.7138 45 1 3.8348 5.3035 2.0138 46 1 3.4027 7.6798 -0.4337 47 1 2.1661 6.0709 -1.7753 48 1 1.3277 4.5114 0.0005 49 1 0.2122 2.3187 -0.0001 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4974316_16737258.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:39:29 Heat of formation + Delta-G solvation = -219.248972 kcal Electronic energy + Delta-G solvation = -31278.645619 eV Core-core repulsion = 26752.105363 eV Total energy + Delta-G solvation = -4526.540256 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06825 -41.50364 -40.23835 -39.92452 -38.50205 -37.81044 -36.94010 -36.61407 -32.37953 -32.20158 -31.85286 -31.46408 -29.87249 -28.36866 -26.62131 -26.12669 -24.06472 -23.75486 -22.56073 -22.42406 -22.00559 -20.89851 -20.05349 -18.76537 -18.47055 -18.21043 -18.17309 -18.00254 -17.24911 -17.19901 -17.02976 -16.60168 -16.49269 -16.34133 -15.89928 -15.53641 -15.43807 -15.22473 -15.09281 -14.74146 -14.47130 -14.39983 -14.14785 -13.84016 -13.75172 -13.48588 -13.37990 -13.24381 -13.19094 -13.12083 -12.62514 -12.55287 -12.27480 -12.17129 -12.07977 -11.96815 -11.88592 -11.75539 -11.67661 -11.65662 -11.53558 -11.12705 -10.73122 -10.37039 -9.73611 -9.13225 -5.03480 0.18916 0.26764 0.88705 0.89388 1.31335 1.64761 1.98659 2.19880 2.38859 2.55385 3.16116 3.32177 3.58072 3.58838 3.68815 3.71145 3.72112 3.79631 3.85634 3.88235 4.00423 4.06734 4.11068 4.14283 4.22478 4.29873 4.31408 4.32517 4.38193 4.43751 4.44141 4.45163 4.45392 4.52866 4.59538 4.77690 4.80247 4.91859 4.99775 5.01406 5.04561 5.12178 5.14254 5.18462 5.21437 5.26087 5.28802 5.41296 5.44768 6.04735 6.35500 6.48926 6.84827 6.85424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.164 3.836 4 C -0.253 4.253 5 C 0.174 3.826 6 O -0.307 6.307 7 C 0.063 3.937 8 C 0.467 3.533 9 O -0.525 6.525 10 O -0.345 6.345 11 C 0.070 3.930 12 C -0.081 4.081 13 H 0.086 0.914 14 C -0.106 4.106 15 C -0.112 4.112 16 C 0.100 3.900 17 H 0.061 0.939 18 O -0.590 6.590 19 C -0.145 4.145 20 C -0.111 4.111 21 C -0.200 4.200 22 C -0.069 4.069 23 O -0.557 6.557 24 Si 0.794 3.206 25 C -0.031 4.031 26 C -0.234 4.234 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.152 0.848 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.393 0.607 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.391 0.609 46 H -0.304 1.304 47 H -0.280 1.280 48 H 0.168 0.832 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 -3.943 2.729 8.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.244 6.244 3 C 0.117 3.883 4 C -0.272 4.272 5 C 0.128 3.872 6 O -0.220 6.220 7 C -0.012 4.012 8 C 0.310 3.690 9 O -0.413 6.413 10 O -0.262 6.262 11 C -0.003 4.003 12 C -0.100 4.100 13 H 0.104 0.896 14 C -0.144 4.144 15 C -0.149 4.149 16 C 0.041 3.959 17 H 0.079 0.921 18 O -0.399 6.399 19 C -0.183 4.183 20 C -0.148 4.148 21 C -0.201 4.201 22 C -0.177 4.177 23 O -0.365 6.365 24 Si 0.699 3.301 25 C -0.048 4.048 26 C -0.253 4.253 27 H 0.087 0.913 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.243 0.757 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.241 0.759 46 H -0.233 1.233 47 H -0.207 1.207 48 H 0.185 0.815 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.235 -2.787 1.266 6.946 hybrid contribution 0.626 -0.570 0.197 0.869 sum -5.610 -3.357 1.463 6.699 Atomic orbital electron populations 1.23416 0.75885 1.05707 1.02833 1.86063 1.23866 1.26609 1.87893 1.18875 0.91562 0.85136 0.92694 1.20557 0.93663 0.97330 1.15685 1.18537 0.80978 0.93405 0.94258 1.86143 1.16176 1.31125 1.88600 1.22180 0.84545 0.86411 1.08062 1.23340 0.90053 0.83233 0.72415 1.90745 1.80800 1.24426 1.45322 1.86419 1.18899 1.37165 1.83681 1.23342 0.75237 0.98736 1.03016 1.21231 0.94104 0.94442 1.00207 0.89554 1.21445 0.92109 0.97181 1.03667 1.21443 1.00509 0.95983 0.97011 1.21915 0.89903 0.85915 0.98156 0.92141 1.86479 1.69424 1.37025 1.46947 1.22207 0.94961 0.98097 1.03048 1.21526 1.00650 0.96055 0.96609 1.19742 0.93816 0.93921 1.12621 1.25132 1.04454 0.99639 0.88488 1.86535 1.39321 1.93822 1.16829 0.94094 0.80359 0.73046 0.82594 1.20874 0.91462 0.98654 0.93818 1.21471 1.01865 0.91109 1.10823 0.91277 0.86709 0.90940 0.83058 0.84771 0.84921 0.90976 0.90915 0.90175 0.90629 0.91634 0.91248 0.75689 0.91625 0.90456 0.91323 0.90769 0.90018 0.75921 1.23279 1.20678 0.81520 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 113.37 1.11 1.00 16 2 O -0.33 -0.12 10.49 -92.34 -0.97 -1.09 16 3 C 0.16 0.16 6.68 22.49 0.15 0.31 16 4 C -0.25 -0.51 8.97 22.46 0.20 -0.30 16 5 C 0.17 0.89 6.66 22.49 0.15 1.04 16 6 O -0.31 -2.51 8.99 -73.40 -0.66 -3.17 16 7 C 0.06 0.06 5.33 71.23 0.38 0.44 16 8 C 0.47 2.99 8.03 71.23 0.57 3.56 16 9 O -0.52 -7.99 16.25 28.40 0.46 -7.53 16 10 O -0.34 -0.96 9.76 -51.45 -0.50 -1.47 16 11 C 0.07 0.09 4.84 71.98 0.35 0.44 16 12 C -0.08 0.16 2.43 -10.80 -0.03 0.13 16 13 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 14 C -0.11 0.28 5.20 30.59 0.16 0.44 16 15 C -0.11 0.03 5.57 30.59 0.17 0.20 16 16 C 0.10 -0.06 3.47 30.59 0.11 0.04 16 17 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 18 O -0.59 -1.21 13.32 -148.98 -1.98 -3.19 16 19 C -0.15 0.38 5.55 30.59 0.17 0.55 16 20 C -0.11 0.29 5.10 30.59 0.16 0.45 16 21 C -0.20 -0.66 5.28 -19.75 -0.10 -0.76 16 22 C -0.07 -0.35 2.37 71.23 0.17 -0.18 16 23 O -0.56 -3.63 12.88 -148.98 -1.92 -5.55 16 24 Si 0.79 -0.16 29.91 68.60 2.05 1.89 16 25 C -0.03 0.07 8.65 22.24 0.19 0.26 16 26 C -0.23 0.62 9.04 22.38 0.20 0.82 16 27 H 0.07 -0.62 7.66 -2.39 -0.02 -0.64 16 28 H 0.11 -1.11 8.14 -2.39 -0.02 -1.13 16 29 H 0.07 -0.69 7.66 -2.39 -0.02 -0.71 16 30 H 0.15 -0.26 6.30 -2.91 -0.02 -0.28 16 31 H 0.13 -0.60 7.66 -2.39 -0.02 -0.62 16 32 H 0.13 -0.58 7.66 -2.39 -0.02 -0.60 16 33 H 0.07 0.15 8.13 -2.38 -0.02 0.13 16 34 H 0.07 0.14 8.13 -2.39 -0.02 0.12 16 35 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 39 H 0.39 -2.29 9.08 -74.06 -0.67 -2.97 16 40 H 0.06 -0.05 8.14 -2.38 -0.02 -0.07 16 41 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 42 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.07 -0.16 7.82 -2.38 -0.02 -0.18 16 44 H 0.08 0.86 7.82 -2.39 -0.02 0.84 16 45 H 0.39 -1.33 8.70 -74.05 -0.64 -1.98 16 46 H -0.30 -2.45 7.11 99.48 0.71 -1.74 16 47 H -0.28 -1.00 7.11 99.48 0.71 -0.30 16 48 H 0.17 -1.48 5.11 -2.91 -0.01 -1.50 16 49 H 0.16 -1.35 6.29 -2.91 -0.02 -1.37 16 Total: 0.00 -26.29 398.27 0.29 -26.00 By element: Atomic # 1 Polarization: -14.03 SS G_CDS: -0.30 Total: -14.33 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 4.11 Total: 8.44 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -5.57 Total: -22.00 kcal Atomic # 14 Polarization: -0.16 SS G_CDS: 2.05 Total: 1.89 kcal Total: -26.29 0.29 -26.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4974316_16737258.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.252 kcal (2) G-P(sol) polarization free energy of solvation -26.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds