Wall clock time and date at job start Sat Mar 6 2021 10:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.50701 * 109.46791 * 179.97438 * 15 14 13 17 17 O 1.20822 * 120.00024 * 0.02562 * 16 15 14 18 18 O 1.34227 * 119.99910 * 179.97438 * 16 15 14 19 19 C 1.45200 * 117.00437 * 180.02562 * 18 16 15 20 20 Si 1.86298 * 109.47004 * 75.00077 * 19 18 16 21 21 C 1.86302 * 109.47153 * 60.00631 * 20 19 18 22 22 C 1.86302 * 109.47165 * 180.02562 * 20 19 18 23 23 C 1.86302 * 109.47289 * 300.00392 * 20 19 18 24 24 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 25 25 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 26 26 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 28 28 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 30 30 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 31 31 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 32 32 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 33 33 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 34 34 H 1.08998 * 109.47468 * 195.00716 * 19 18 16 35 35 H 1.09004 * 109.46911 * 315.00373 * 19 18 16 36 36 H 1.08998 * 109.46927 * 59.99601 * 21 20 19 37 37 H 1.08992 * 109.47303 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46474 * 299.99749 * 21 20 19 39 39 H 1.09004 * 109.46979 * 60.00155 * 22 20 19 40 40 H 1.09000 * 109.47237 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47239 * 300.00598 * 22 20 19 42 42 H 1.09000 * 109.46819 * 60.00130 * 23 20 19 43 43 H 1.09000 * 109.47336 * 180.02562 * 23 20 19 44 44 H 1.09004 * 109.47065 * 299.99973 * 23 20 19 45 45 H 1.07995 * 120.05190 * 179.97438 * 24 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6127 1.6397 -0.0006 17 8 8.0121 2.7800 0.0007 18 8 8.4878 0.6220 -0.0011 19 6 9.8986 0.9656 -0.0005 20 14 10.3940 1.5531 1.6966 21 6 10.0845 0.1985 2.9376 22 6 12.2039 1.9948 1.6971 23 6 9.3889 3.0542 2.1521 24 6 3.4305 1.2840 -0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2123 2.3184 0.0005 29 1 1.3281 4.5115 0.0113 30 1 4.7897 5.0225 0.7288 31 1 3.8355 5.3143 -1.9976 32 1 5.8700 0.7868 0.8888 33 1 5.8704 0.7888 -0.8911 34 1 10.4866 0.0874 -0.2671 35 1 10.0797 1.7582 -0.7266 36 1 10.6725 -0.6797 2.6710 37 1 10.3739 0.5424 3.9305 38 1 9.0254 -0.0594 2.9371 39 1 12.3847 2.7875 0.9710 40 1 12.4937 2.3389 2.6899 41 1 12.7922 1.1168 1.4303 42 1 8.3299 2.7961 2.1517 43 1 9.6791 3.3982 3.1448 44 1 9.5701 3.8468 1.4260 45 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_4974316_4858416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:54:02 Heat of formation + Delta-G solvation = -186.523948 kcal Electronic energy + Delta-G solvation = -26529.026659 eV Core-core repulsion = 22637.219934 eV Total energy + Delta-G solvation = -3891.806725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93099 -41.31303 -40.03266 -38.40799 -37.28638 -36.84528 -32.32361 -31.66965 -30.25548 -29.57328 -28.55176 -28.48205 -28.32652 -27.48278 -26.08662 -23.86712 -22.50423 -21.89118 -20.05263 -18.63810 -18.35008 -18.00848 -17.95571 -17.29071 -17.17866 -16.92144 -16.58735 -16.42038 -15.78810 -15.56856 -15.19983 -14.86312 -14.52220 -14.48604 -14.15154 -14.04181 -13.85520 -13.81073 -13.60648 -13.45214 -13.42257 -13.28853 -13.22197 -13.04315 -12.95007 -12.68997 -12.39035 -12.32876 -12.12787 -11.97248 -11.69239 -11.56714 -11.36353 -10.91395 -10.75286 -10.42015 -10.24641 -9.72529 -9.10902 0.18121 0.29733 1.01834 1.13344 1.22617 1.44263 1.50742 1.56820 1.81060 1.83987 1.97056 2.13737 2.51587 2.52545 2.56331 3.59716 3.62767 3.66384 3.81362 3.84779 3.88785 3.99146 4.02448 4.13469 4.17709 4.23014 4.35854 4.36922 4.51263 4.62456 4.66671 4.68837 4.72180 4.74045 4.75046 4.91665 4.98066 5.00960 5.20354 5.24414 5.32583 5.41390 5.42831 5.50071 5.77225 6.07537 6.30120 6.74124 6.75896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.175 3.825 4 C -0.237 4.237 5 C -0.048 4.048 6 C -0.183 4.183 7 C -0.065 4.065 8 O -0.531 6.531 9 Si 0.947 3.053 10 H -0.249 1.249 11 H -0.252 1.252 12 H -0.253 1.253 13 C 0.195 3.805 14 O -0.275 6.275 15 C 0.064 3.936 16 C 0.446 3.554 17 O -0.461 6.461 18 O -0.334 6.334 19 C -0.237 4.237 20 Si 0.999 3.001 21 C -0.446 4.446 22 C -0.446 4.446 23 C -0.437 4.437 24 C -0.246 4.246 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.117 0.883 31 H 0.370 0.630 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.764 -3.082 0.619 4.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.129 3.871 4 C -0.256 4.256 5 C -0.066 4.066 6 C -0.184 4.184 7 C -0.176 4.176 8 O -0.336 6.336 9 Si 0.770 3.230 10 H -0.173 1.173 11 H -0.176 1.176 12 H -0.177 1.177 13 C 0.149 3.851 14 O -0.187 6.187 15 C -0.013 4.013 16 C 0.286 3.714 17 O -0.346 6.346 18 O -0.250 6.250 19 C -0.356 4.356 20 Si 1.195 2.805 21 C -0.554 4.554 22 C -0.554 4.554 23 C -0.545 4.545 24 C -0.265 4.265 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.135 0.865 31 H 0.216 0.784 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.434 -2.113 1.133 3.416 hybrid contribution -0.451 -0.602 -0.563 0.939 sum -2.885 -2.715 0.570 4.002 Atomic orbital electron populations 1.23152 0.77585 1.04469 1.01754 1.86085 1.22023 1.26589 1.87945 1.18677 0.91458 0.84399 0.92596 1.21123 1.00486 0.91765 1.12195 1.20745 0.92732 0.97901 0.95193 1.19536 0.92651 0.94592 1.11669 1.24776 1.05944 0.97375 0.89527 1.86606 1.37373 1.93581 1.15991 0.85793 0.77426 0.78756 0.81040 1.17275 1.17581 1.17699 1.18290 0.81444 0.92435 0.92932 1.86190 1.15092 1.29383 1.88035 1.21933 0.86702 0.86894 1.05742 1.22826 0.89136 0.84289 0.75156 1.90747 1.79489 1.22341 1.42071 1.86362 1.17676 1.37006 1.83994 1.28415 0.79205 1.07355 1.20590 0.79715 0.68107 0.67866 0.64852 1.26061 1.05143 1.12687 1.11483 1.26037 1.18775 1.05587 1.05043 1.26251 1.08537 1.14852 1.04896 1.20435 0.93013 0.97426 1.15660 0.92248 0.87829 0.92230 0.84736 0.84835 0.86473 0.78352 0.87384 0.87374 0.86966 0.89900 0.91039 0.90921 0.91110 0.90916 0.90612 0.91046 0.91554 0.91829 0.90310 0.84115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 9.81 101.05 0.99 0.93 16 2 O -0.31 -0.31 10.49 -19.42 -0.20 -0.52 16 3 C 0.17 0.22 6.68 -39.24 -0.26 -0.04 16 4 C -0.24 -0.06 9.04 -39.41 -0.36 -0.41 16 5 C -0.05 -0.02 8.65 -39.63 -0.34 -0.36 16 6 C -0.18 -0.30 5.28 -104.45 -0.55 -0.85 16 7 C -0.07 -0.10 2.38 36.00 0.09 -0.02 16 8 O -0.53 -1.34 12.88 -35.23 -0.45 -1.80 16 9 Si 0.95 0.23 25.48 -169.99 -4.33 -4.10 16 10 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 11 H -0.25 -0.47 7.11 56.52 0.40 -0.06 16 12 H -0.25 0.12 6.74 56.52 0.38 0.50 16 13 C 0.20 0.41 6.66 -39.24 -0.26 0.15 16 14 O -0.27 -0.77 9.00 -39.37 -0.35 -1.12 16 15 C 0.06 0.00 5.33 36.01 0.19 0.19 16 16 C 0.45 0.91 6.82 36.01 0.25 1.16 16 17 O -0.46 -2.20 12.17 -25.47 -0.31 -2.51 16 18 O -0.33 -0.33 9.92 -39.25 -0.39 -0.72 16 19 C -0.24 0.09 5.40 101.05 0.55 0.63 16 20 Si 1.00 -1.34 12.12 -169.99 -2.06 -3.40 16 21 C -0.45 0.45 8.65 101.05 0.87 1.33 16 22 C -0.45 0.54 8.65 101.05 0.87 1.42 16 23 C -0.44 -0.62 7.10 101.05 0.72 0.10 16 24 C -0.25 -0.28 8.97 -39.29 -0.35 -0.63 16 25 H 0.06 -0.19 7.66 -51.93 -0.40 -0.59 16 26 H 0.10 -0.39 8.14 -51.93 -0.42 -0.81 16 27 H 0.06 -0.19 7.66 -51.93 -0.40 -0.59 16 28 H 0.13 -0.25 6.29 -52.48 -0.33 -0.58 16 29 H 0.13 -0.17 4.87 -52.49 -0.26 -0.42 16 30 H 0.12 0.26 7.82 -51.93 -0.41 -0.15 16 31 H 0.37 -0.44 8.70 45.56 0.40 -0.05 16 32 H 0.11 -0.27 7.66 -51.93 -0.40 -0.67 16 33 H 0.11 -0.21 7.66 -51.93 -0.40 -0.61 16 34 H 0.11 -0.26 7.96 -51.93 -0.41 -0.68 16 35 H 0.08 0.02 7.52 -51.93 -0.39 -0.37 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 37 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 39 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 40 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 0.17 6.28 -51.93 -0.33 -0.16 16 43 H 0.06 0.05 7.96 -51.93 -0.41 -0.37 16 44 H 0.08 0.22 7.43 -51.93 -0.39 -0.16 16 45 H 0.14 -0.10 6.30 -52.49 -0.33 -0.43 16 LS Contribution 370.13 15.07 5.58 5.58 Total: 0.00 -7.66 370.13 -6.29 -13.95 By element: Atomic # 1 Polarization: -2.78 SS G_CDS: -6.17 Total: -8.95 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 2.40 Total: 3.59 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -1.71 Total: -6.67 kcal Atomic # 14 Polarization: -1.12 SS G_CDS: -6.39 Total: -7.51 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -7.66 -6.29 -13.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4974316_4858416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.572 kcal (2) G-P(sol) polarization free energy of solvation -7.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds