Wall clock time and date at job start Sat Mar 6 2021 10:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35898 * 117.00037 * 2 1 4 4 C 1.38748 * 120.02844 * 0.02562 * 3 2 1 5 5 C 1.38200 * 120.05718 * 179.72051 * 4 3 2 6 6 C 1.38156 * 120.10581 * 0.51689 * 5 4 3 7 7 C 1.50697 * 119.97228 * 179.76717 * 6 5 4 8 8 O 1.42906 * 109.46831 * 254.72329 * 7 6 5 9 9 Si 1.86300 * 109.47007 * 14.71718 * 7 6 5 10 10 H 1.48503 * 109.46942 * 60.00611 * 9 7 6 11 11 H 1.48503 * 109.47276 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47372 * 300.00074 * 9 7 6 13 13 C 1.38791 * 120.05409 * 359.48303 * 6 5 4 14 14 O 1.35896 * 120.02634 * 180.27722 * 13 6 5 15 15 C 1.42906 * 116.99850 * 180.02562 * 14 13 6 16 16 C 1.50701 * 109.46791 * 179.97438 * 15 14 13 17 17 O 1.20822 * 120.00024 * 0.02562 * 16 15 14 18 18 O 1.34227 * 119.99910 * 179.97438 * 16 15 14 19 19 C 1.45200 * 117.00437 * 180.02562 * 18 16 15 20 20 Si 1.86298 * 109.47004 * 75.00077 * 19 18 16 21 21 C 1.86302 * 109.47153 * 60.00631 * 20 19 18 22 22 C 1.86302 * 109.47165 * 180.02562 * 20 19 18 23 23 C 1.86302 * 109.47289 * 300.00392 * 20 19 18 24 24 C 1.38620 * 119.94745 * 0.25955 * 13 6 5 25 25 H 1.09003 * 109.47090 * 59.99958 * 1 2 3 26 26 H 1.09004 * 109.46855 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47421 * 300.00184 * 1 2 3 28 28 H 1.08008 * 119.97336 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.94710 * 180.27901 * 5 4 3 30 30 H 1.09000 * 109.47374 * 134.71902 * 7 6 5 31 31 H 0.96693 * 114.00047 * 60.00191 * 8 7 6 32 32 H 1.08993 * 109.47249 * 300.00194 * 15 14 13 33 33 H 1.08995 * 109.46882 * 60.00797 * 15 14 13 34 34 H 1.08998 * 109.47468 * 195.00716 * 19 18 16 35 35 H 1.09004 * 109.46911 * 315.00373 * 19 18 16 36 36 H 1.08998 * 109.46927 * 59.99601 * 21 20 19 37 37 H 1.08992 * 109.47303 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46474 * 299.99749 * 21 20 19 39 39 H 1.09004 * 109.46979 * 60.00155 * 22 20 19 40 40 H 1.09000 * 109.47237 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47239 * 300.00598 * 22 20 19 42 42 H 1.09000 * 109.46819 * 60.00130 * 23 20 19 43 43 H 1.09000 * 109.47336 * 180.02562 * 23 20 19 44 44 H 1.09004 * 109.47065 * 299.99973 * 23 20 19 45 45 H 1.07995 * 120.05190 * 179.97438 * 24 13 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2909 2.3749 0.0005 5 6 1.9176 3.6065 0.0064 6 6 3.2971 3.6821 0.0009 7 6 3.9774 5.0268 0.0020 8 8 4.5039 5.2953 -1.2992 9 14 2.7438 6.3465 0.4571 10 1 2.1967 6.0675 1.8092 11 1 3.4140 7.6717 0.4576 12 1 1.6372 6.3524 -0.5331 13 6 4.0569 2.5206 0.0004 14 8 5.4138 2.5956 0.0007 15 6 6.1318 1.3601 -0.0005 16 6 7.6127 1.6397 -0.0006 17 8 8.0121 2.7800 0.0007 18 8 8.4878 0.6220 -0.0011 19 6 9.8986 0.9656 -0.0005 20 14 10.3940 1.5531 1.6966 21 6 10.0845 0.1985 2.9376 22 6 12.2039 1.9948 1.6971 23 6 9.3889 3.0542 2.1521 24 6 3.4305 1.2840 -0.0001 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.2123 2.3184 0.0005 29 1 1.3281 4.5115 0.0113 30 1 4.7897 5.0225 0.7288 31 1 3.8355 5.3143 -1.9976 32 1 5.8700 0.7868 0.8888 33 1 5.8704 0.7888 -0.8911 34 1 10.4866 0.0874 -0.2671 35 1 10.0797 1.7582 -0.7266 36 1 10.6725 -0.6797 2.6710 37 1 10.3739 0.5424 3.9305 38 1 9.0254 -0.0594 2.9371 39 1 12.3847 2.7875 0.9710 40 1 12.4937 2.3389 2.6899 41 1 12.7922 1.1168 1.4303 42 1 8.3299 2.7961 2.1517 43 1 9.6791 3.3982 3.1448 44 1 9.5701 3.8468 1.4260 45 1 4.0201 0.3792 -0.0009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4974316_4858416.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:54:01 Heat of formation + Delta-G solvation = -181.989871 kcal Electronic energy + Delta-G solvation = -26528.830047 eV Core-core repulsion = 22637.219934 eV Total energy + Delta-G solvation = -3891.610112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.139 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.99715 -41.39382 -40.04453 -38.47698 -37.44085 -36.92650 -32.34359 -31.69381 -30.29014 -29.54585 -28.43352 -28.39159 -28.36541 -27.46187 -26.12918 -23.89780 -22.53376 -21.97824 -20.06629 -18.71163 -18.44665 -18.08677 -18.03583 -17.31390 -17.19689 -16.92262 -16.58188 -16.42553 -15.85978 -15.58700 -15.21739 -14.90842 -14.56316 -14.51323 -14.10974 -14.03159 -13.86348 -13.80981 -13.57079 -13.44563 -13.36217 -13.25634 -13.21520 -13.06191 -12.94656 -12.65753 -12.43033 -12.27254 -12.19968 -12.00831 -11.67397 -11.60890 -11.51215 -10.86145 -10.77929 -10.42623 -10.33892 -9.74651 -9.14167 0.15761 0.25835 0.99469 1.01557 1.17035 1.41922 1.52641 1.55750 1.86870 1.90667 1.91876 2.22049 2.50037 2.53576 2.54986 3.58343 3.59905 3.67128 3.81882 3.91471 3.93837 4.02987 4.13792 4.22775 4.30766 4.37968 4.40080 4.42603 4.65688 4.68160 4.73201 4.76601 4.76711 4.80143 4.81242 4.82707 4.86895 4.98704 5.19511 5.22255 5.23790 5.41670 5.52188 5.60084 5.63040 6.06775 6.33440 6.64230 6.78272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.164 3.836 4 C -0.236 4.236 5 C -0.049 4.049 6 C -0.197 4.197 7 C -0.074 4.074 8 O -0.554 6.554 9 Si 0.988 3.012 10 H -0.252 1.252 11 H -0.279 1.279 12 H -0.233 1.233 13 C 0.181 3.819 14 O -0.300 6.300 15 C 0.058 3.942 16 C 0.444 3.556 17 O -0.497 6.497 18 O -0.332 6.332 19 C -0.256 4.256 20 Si 1.060 2.940 21 C -0.451 4.451 22 C -0.452 4.452 23 C -0.459 4.459 24 C -0.251 4.251 25 H 0.068 0.932 26 H 0.117 0.883 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.098 0.902 31 H 0.385 0.615 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.656 -4.406 0.627 5.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.243 6.243 3 C 0.118 3.882 4 C -0.255 4.255 5 C -0.067 4.067 6 C -0.198 4.198 7 C -0.184 4.184 8 O -0.361 6.361 9 Si 0.810 3.190 10 H -0.176 1.176 11 H -0.205 1.205 12 H -0.156 1.156 13 C 0.135 3.865 14 O -0.212 6.212 15 C -0.017 4.017 16 C 0.286 3.714 17 O -0.385 6.385 18 O -0.248 6.248 19 C -0.373 4.373 20 Si 1.252 2.748 21 C -0.560 4.560 22 C -0.560 4.560 23 C -0.563 4.563 24 C -0.270 4.270 25 H 0.087 0.913 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.169 0.831 30 H 0.117 0.883 31 H 0.233 0.767 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.363 -3.449 1.124 4.947 hybrid contribution -0.165 -0.209 -0.570 0.629 sum -3.528 -3.658 0.554 5.112 Atomic orbital electron populations 1.23404 0.76002 1.05732 1.02661 1.86063 1.23755 1.26540 1.87914 1.18856 0.91666 0.84961 0.92759 1.21399 1.01636 0.91271 1.11170 1.20938 0.92227 0.98794 0.94740 1.19688 0.93372 0.94424 1.12316 1.24952 1.05989 0.98623 0.88797 1.86555 1.38875 1.93700 1.16925 0.85218 0.76721 0.75980 0.81075 1.17617 1.20502 1.15588 1.18462 0.81225 0.93093 0.93754 1.86150 1.15740 1.30978 1.88381 1.22200 0.85160 0.86453 1.07889 1.23292 0.90076 0.83945 0.74061 1.90738 1.80149 1.23697 1.43912 1.86361 1.18260 1.36548 1.83590 1.28743 0.78771 1.08429 1.21364 0.78793 0.66871 0.65450 0.63674 1.26109 1.05180 1.13089 1.11574 1.26086 1.18848 1.06023 1.05087 1.26588 1.08563 1.16630 1.04537 1.20597 0.93469 0.97555 1.15423 0.91308 0.86523 0.91300 0.82541 0.83137 0.88349 0.76705 0.84891 0.85303 0.84516 0.90827 0.89952 0.90725 0.91420 0.91320 0.90459 0.89818 0.93107 0.91631 0.92383 0.82811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.33 -0.46 10.49 -92.40 -0.97 -1.43 16 3 C 0.16 0.37 6.68 22.49 0.15 0.52 16 4 C -0.24 0.08 9.04 22.38 0.20 0.29 16 5 C -0.05 -0.02 8.65 22.24 0.19 0.17 16 6 C -0.20 -0.83 5.28 -19.75 -0.10 -0.94 16 7 C -0.07 -0.36 2.38 71.23 0.17 -0.19 16 8 O -0.55 -3.83 12.88 -148.98 -1.92 -5.75 16 9 Si 0.99 0.81 25.48 68.60 1.75 2.56 16 10 H -0.25 -0.30 7.11 99.48 0.71 0.41 16 11 H -0.28 -1.44 7.11 99.48 0.71 -0.73 16 12 H -0.23 0.58 6.74 99.48 0.67 1.25 16 13 C 0.18 0.97 6.66 22.49 0.15 1.12 16 14 O -0.30 -2.26 9.00 -73.31 -0.66 -2.92 16 15 C 0.06 0.06 5.33 71.24 0.38 0.44 16 16 C 0.44 2.52 6.82 71.24 0.49 3.01 16 17 O -0.50 -6.11 12.17 28.41 0.35 -5.76 16 18 O -0.33 -0.84 9.92 -51.39 -0.51 -1.35 16 19 C -0.26 0.10 5.40 113.37 0.61 0.71 16 20 Si 1.06 -2.38 12.12 68.60 0.83 -1.55 16 21 C -0.45 1.17 8.65 113.37 0.98 2.15 16 22 C -0.45 1.21 8.65 113.37 0.98 2.19 16 23 C -0.46 -2.41 7.10 113.37 0.81 -1.61 16 24 C -0.25 -0.66 8.97 22.46 0.20 -0.46 16 25 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 26 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H 0.07 -0.53 7.66 -2.39 -0.02 -0.55 16 28 H 0.16 -0.87 6.29 -2.91 -0.02 -0.89 16 29 H 0.15 -0.57 4.87 -2.91 -0.01 -0.58 16 30 H 0.10 0.75 7.82 -2.39 -0.02 0.73 16 31 H 0.38 -0.47 8.70 -74.06 -0.64 -1.11 16 32 H 0.13 -0.62 7.66 -2.39 -0.02 -0.63 16 33 H 0.13 -0.47 7.66 -2.39 -0.02 -0.49 16 34 H 0.14 -0.78 7.96 -2.39 -0.02 -0.79 16 35 H 0.07 0.13 7.52 -2.38 -0.02 0.11 16 36 H 0.08 -0.36 7.96 -2.39 -0.02 -0.38 16 37 H 0.07 -0.20 7.96 -2.39 -0.02 -0.22 16 38 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 39 H 0.07 -0.10 7.96 -2.38 -0.02 -0.12 16 40 H 0.08 -0.20 7.96 -2.39 -0.02 -0.22 16 41 H 0.08 -0.40 7.96 -2.39 -0.02 -0.42 16 42 H 0.05 0.41 6.28 -2.39 -0.01 0.39 16 43 H 0.06 0.24 7.96 -2.39 -0.02 0.22 16 44 H 0.06 0.53 7.43 -2.38 -0.02 0.51 16 45 H 0.15 -0.21 6.30 -2.91 -0.02 -0.23 16 Total: 0.00 -19.49 370.13 6.26 -13.23 By element: Atomic # 1 Polarization: -6.53 SS G_CDS: 1.08 Total: -5.46 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 6.32 Total: 8.43 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -3.71 Total: -17.21 kcal Atomic # 14 Polarization: -1.57 SS G_CDS: 2.58 Total: 1.01 kcal Total: -19.49 6.26 -13.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4974316_4858416.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.761 kcal (2) G-P(sol) polarization free energy of solvation -19.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds