Wall clock time and date at job start Sat Mar 6 2021 08:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37697 * 125.67792 * 2 1 4 4 C 1.46487 * 126.23441 * 359.96293 * 3 2 1 5 5 O 1.21629 * 119.99816 * 179.71958 * 4 3 2 6 6 O 1.34886 * 120.00401 * 359.71664 * 4 3 2 7 7 C 1.45203 * 117.00368 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47225 * 180.02562 * 7 6 4 9 9 C 1.38236 * 119.99435 * 269.72714 * 8 7 6 10 10 C 1.38236 * 119.99788 * 179.76905 * 9 8 7 11 11 C 1.38241 * 119.99544 * 0.50216 * 10 9 8 12 12 Si 1.86807 * 119.99732 * 179.72796 * 11 10 9 13 13 C 1.86298 * 109.46916 * 270.02072 * 12 11 10 14 14 C 1.86302 * 109.47275 * 30.02233 * 12 11 10 15 15 C 1.86303 * 109.47188 * 150.02240 * 12 11 10 16 16 C 1.38229 * 120.00195 * 359.74642 * 11 10 9 17 17 C 1.38230 * 120.00313 * 89.99590 * 8 7 6 18 18 C 1.37990 * 107.52764 * 179.70486 * 3 2 1 19 19 C 1.39817 * 107.08076 * 0.26030 * 18 3 2 20 20 Br 1.89105 * 126.06554 * 179.97438 * 19 18 3 21 21 C 1.35543 * 107.87318 * 0.02562 * 19 18 3 22 22 C 1.50705 * 125.56378 * 180.02562 * 21 19 18 23 23 O 1.42897 * 109.46879 * 302.46175 * 22 21 19 24 24 Si 1.86303 * 109.47093 * 62.46212 * 22 21 19 25 25 H 1.48493 * 109.47060 * 53.97772 * 24 22 21 26 26 H 1.48497 * 109.46858 * 173.97836 * 24 22 21 27 27 H 1.48495 * 109.46842 * 293.97521 * 24 22 21 28 28 H 1.09005 * 109.47168 * 90.02657 * 1 2 3 29 29 H 1.09002 * 109.46895 * 210.02702 * 1 2 3 30 30 H 1.09001 * 109.47154 * 330.02924 * 1 2 3 31 31 H 1.08999 * 109.46811 * 59.99986 * 7 6 4 32 32 H 1.08996 * 109.46800 * 300.00006 * 7 6 4 33 33 H 1.08001 * 120.00696 * 359.97438 * 9 8 7 34 34 H 1.07997 * 120.00203 * 180.22787 * 10 9 8 35 35 H 1.09003 * 109.46949 * 60.00402 * 13 12 11 36 36 H 1.09000 * 109.47235 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47519 * 299.99910 * 13 12 11 38 38 H 1.09003 * 109.46871 * 59.99686 * 14 12 11 39 39 H 1.09000 * 109.47173 * 180.02562 * 14 12 11 40 40 H 1.09007 * 109.46653 * 300.00305 * 14 12 11 41 41 H 1.09000 * 109.46917 * 59.99683 * 15 12 11 42 42 H 1.08990 * 109.47026 * 179.97438 * 15 12 11 43 43 H 1.08999 * 109.46479 * 300.00159 * 15 12 11 44 44 H 1.08003 * 119.99758 * 179.97438 * 16 11 10 45 45 H 1.07998 * 119.99874 * 0.02562 * 17 8 7 46 46 H 1.07996 * 126.45822 * 180.25815 * 18 3 2 47 47 H 1.08995 * 109.47082 * 182.46162 * 22 21 19 48 48 H 0.96703 * 114.00252 * 59.99933 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2681 1.1185 0.0000 4 6 1.8133 2.5110 -0.0008 5 8 2.6258 3.4161 0.0045 6 8 0.4935 2.7895 -0.0073 7 6 0.1155 4.1915 -0.0083 8 6 -1.3870 4.3067 -0.0153 9 6 -2.0700 4.3660 -1.2157 10 6 -3.4487 4.4669 -1.2222 11 6 -4.1435 4.5189 -0.0282 12 14 -6.0060 4.6629 -0.0370 13 6 -6.4897 6.4620 -0.0382 14 6 -6.6856 3.8361 -1.5619 15 6 -6.7001 3.8343 1.4804 16 6 -3.4601 4.4649 1.1721 17 6 -2.0819 4.3588 1.1786 18 6 3.5793 0.6887 0.0068 19 6 3.5532 -0.7092 0.0048 20 35 5.0608 -1.8509 0.0111 21 6 2.2557 -1.1011 -0.0036 22 6 1.7711 -2.5281 -0.0078 23 8 2.3096 -3.2106 -1.1419 24 14 2.3307 -3.3786 1.5524 25 1 1.8937 -2.5882 2.7311 26 1 1.7328 -4.7364 1.6177 27 1 3.8115 -3.4893 1.5519 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5134 31 1 0.5217 4.6766 -0.8958 32 1 0.5125 4.6753 0.8841 33 1 -1.5268 4.3301 -2.1485 34 1 -3.9826 4.5094 -2.1600 35 1 -6.0836 6.9468 -0.9260 36 1 -7.5764 6.5461 -0.0437 37 1 -6.0921 6.9458 0.8540 38 1 -6.4025 2.7835 -1.5612 39 1 -7.7723 3.9205 -1.5672 40 1 -6.2794 4.3210 -2.4497 41 1 -6.3024 4.3180 2.3725 42 1 -7.7867 3.9187 1.4755 43 1 -6.4170 2.7817 1.4810 44 1 -4.0030 4.5060 2.1049 45 1 -1.5479 4.3173 2.1164 46 1 4.4597 1.3142 0.0125 47 1 0.6824 -2.5419 -0.0587 48 1 3.2760 -3.2374 -1.1624 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_4999870_9435856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:01:15 Heat of formation + Delta-G solvation = -73.099683 kcal Electronic energy + Delta-G solvation = -29733.968062 eV Core-core repulsion = 25538.984212 eV Total energy + Delta-G solvation = -4194.983849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 425.062 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.00766 -41.35687 -39.97427 -38.00413 -37.71188 -34.64801 -33.16856 -32.32441 -31.90890 -31.17994 -29.44855 -28.28531 -28.27200 -28.08648 -27.45888 -26.68774 -23.94264 -23.50868 -22.11711 -21.56757 -21.04386 -19.14681 -18.66923 -18.26906 -17.85054 -17.41175 -16.97205 -16.42541 -16.17546 -15.97508 -15.85213 -15.24789 -14.94529 -14.75899 -14.39832 -14.32398 -14.27043 -14.20950 -14.19107 -14.03810 -13.90013 -13.85658 -13.71781 -13.48753 -13.19589 -13.15203 -13.10670 -12.96014 -12.83218 -12.76398 -12.67407 -12.25005 -12.14878 -12.05781 -11.83612 -11.78929 -10.95060 -10.92257 -10.79783 -10.78613 -10.75127 -9.93229 -9.83091 -9.72626 -9.47685 -0.19760 0.05344 0.42384 0.49838 0.73476 1.05622 1.35258 1.44092 1.50034 1.71684 1.74889 1.83736 1.94236 2.03167 2.12104 2.66568 2.91254 3.10102 3.33592 3.43875 3.59467 3.70735 3.74077 3.81938 4.07697 4.19137 4.20426 4.23317 4.31774 4.40428 4.49527 4.52030 4.67111 4.68803 4.84547 4.84839 4.89244 4.90224 4.90622 4.91082 4.95656 5.02554 5.12603 5.13849 5.37876 5.40911 5.54448 5.57296 5.59923 5.68286 5.68446 5.71778 6.08778 6.29452 6.42576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.392 5.392 3 C -0.047 4.047 4 C 0.544 3.456 5 O -0.522 6.522 6 O -0.346 6.346 7 C 0.109 3.891 8 C -0.102 4.102 9 C -0.118 4.118 10 C -0.101 4.101 11 C -0.369 4.369 12 Si 1.129 2.871 13 C -0.466 4.466 14 C -0.463 4.463 15 C -0.462 4.462 16 C -0.100 4.100 17 C -0.118 4.118 18 C -0.069 4.069 19 C -0.199 4.199 20 Br -0.006 7.006 21 C 0.074 3.926 22 C -0.066 4.066 23 O -0.536 6.536 24 Si 0.947 3.053 25 H -0.256 1.256 26 H -0.243 1.243 27 H -0.219 1.219 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.140 0.860 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.165 0.835 47 H 0.146 0.854 48 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 -1.471 1.073 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.067 5.067 3 C -0.158 4.158 4 C 0.391 3.609 5 O -0.412 6.412 6 O -0.263 6.263 7 C 0.037 3.963 8 C -0.102 4.102 9 C -0.136 4.136 10 C -0.118 4.118 11 C -0.408 4.408 12 Si 1.316 2.684 13 C -0.572 4.572 14 C -0.570 4.570 15 C -0.569 4.569 16 C -0.118 4.118 17 C -0.136 4.136 18 C -0.096 4.096 19 C -0.284 4.284 20 Br 0.077 6.923 21 C -0.050 4.050 22 C -0.175 4.175 23 O -0.343 6.343 24 Si 0.764 3.236 25 H -0.180 1.180 26 H -0.166 1.166 27 H -0.140 1.140 28 H 0.115 0.885 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.159 0.841 45 H 0.146 0.854 46 H 0.182 0.818 47 H 0.164 0.836 48 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.638 -2.000 1.674 7.132 hybrid contribution 0.689 1.126 -0.426 1.387 sum -5.949 -0.874 1.248 6.141 Atomic orbital electron populations 1.22768 0.73045 1.07125 1.06047 1.44192 1.08265 1.03541 1.50701 1.19304 0.90547 0.84279 1.21620 1.19687 0.81071 0.87537 0.72637 1.90931 1.55551 1.47016 1.47700 1.86651 1.24364 1.31230 1.84064 1.21982 0.92355 0.78158 1.03851 1.19480 0.92535 1.03602 0.94613 1.21354 0.95515 0.99422 0.97318 1.21383 0.93539 0.97574 0.99347 1.28038 1.18849 1.00074 0.93826 0.77132 0.59431 0.65655 0.66145 1.26331 1.05752 1.20771 1.04361 1.26287 1.06998 1.07934 1.15776 1.26273 1.07086 1.07953 1.15617 1.21387 0.93622 0.97527 0.99269 1.21356 0.95422 0.99397 0.97384 1.21314 0.95325 0.92942 1.00027 1.20840 0.91922 0.94468 1.21185 1.96665 1.36424 1.61079 1.98091 1.21231 0.89355 0.90861 1.03535 1.24949 1.04802 0.86305 1.01482 1.86532 1.27319 1.76018 1.44478 0.85661 0.84085 0.80126 0.73713 1.17954 1.16573 1.14016 0.88479 0.86261 0.87637 0.90029 0.89897 0.85593 0.84225 0.91486 0.90760 0.91441 0.91121 0.90756 0.90982 0.90917 0.90758 0.91092 0.84123 0.85427 0.81776 0.83627 0.76783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.25 10.18 127.77 1.30 1.05 16 2 N -0.39 -0.59 3.16 -519.65 -1.64 -2.24 16 3 C -0.05 -0.27 6.88 40.31 0.28 0.01 16 4 C 0.54 4.05 7.92 69.97 0.55 4.60 16 5 O -0.52 -6.70 16.68 19.42 0.32 -6.38 16 6 O -0.35 -1.26 7.64 -58.01 -0.44 -1.70 16 7 C 0.11 0.25 5.60 71.24 0.40 0.65 16 8 C -0.10 -0.12 5.52 -19.87 -0.11 -0.23 16 9 C -0.12 -0.03 9.70 22.27 0.22 0.18 16 10 C -0.10 0.18 9.29 22.27 0.21 0.39 16 11 C -0.37 1.15 4.59 22.27 0.10 1.25 16 12 Si 1.13 -8.62 12.32 68.60 0.85 -7.77 16 13 C -0.47 2.22 8.65 113.37 0.98 3.20 16 14 C -0.46 2.81 8.53 113.37 0.97 3.78 16 15 C -0.46 2.90 8.53 113.37 0.97 3.87 16 16 C -0.10 0.21 9.29 22.27 0.21 0.41 16 17 C -0.12 0.01 9.70 22.27 0.22 0.22 16 18 C -0.07 -0.41 10.63 22.59 0.24 -0.17 16 19 C -0.20 -0.80 6.06 22.03 0.13 -0.67 16 20 Br -0.01 -0.01 28.75 -20.37 -0.59 -0.60 16 21 C 0.07 0.13 5.35 41.36 0.22 0.36 16 22 C -0.07 0.11 2.80 71.24 0.20 0.31 16 23 O -0.54 -0.66 12.88 -148.98 -1.92 -2.58 16 24 Si 0.95 -1.47 26.63 68.60 1.83 0.36 16 25 H -0.26 -0.06 7.11 99.48 0.71 0.65 16 26 H -0.24 0.17 7.11 99.48 0.71 0.87 16 27 H -0.22 0.18 5.57 99.48 0.55 0.74 16 28 H 0.10 -0.62 8.14 -2.38 -0.02 -0.64 16 29 H 0.12 -1.27 7.03 -2.39 -0.02 -1.29 16 30 H 0.11 -0.44 6.16 -2.39 -0.01 -0.46 16 31 H 0.08 0.19 8.08 -2.39 -0.02 0.17 16 32 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 33 H 0.13 -0.20 8.06 -2.91 -0.02 -0.22 16 34 H 0.14 -0.80 7.43 -2.91 -0.02 -0.82 16 35 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 36 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 37 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 38 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 40 H 0.07 -0.45 7.69 -2.38 -0.02 -0.47 16 41 H 0.07 -0.48 7.69 -2.39 -0.02 -0.50 16 42 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 43 H 0.07 -0.42 7.96 -2.39 -0.02 -0.43 16 44 H 0.14 -0.87 7.43 -2.91 -0.02 -0.89 16 45 H 0.13 -0.29 8.06 -2.91 -0.02 -0.31 16 46 H 0.16 0.83 8.06 -2.91 -0.02 0.80 16 47 H 0.15 -1.01 6.52 -2.39 -0.02 -1.02 16 48 H 0.38 -0.33 6.37 -74.06 -0.47 -0.80 16 Total: 0.00 -15.09 417.63 6.59 -8.50 By element: Atomic # 1 Polarization: -7.91 SS G_CDS: 1.11 Total: -6.80 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 7.08 Total: 19.21 kcal Atomic # 7 Polarization: -0.59 SS G_CDS: -1.64 Total: -2.24 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -2.04 Total: -10.66 kcal Atomic # 14 Polarization: -10.09 SS G_CDS: 2.67 Total: -7.41 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.59 Total: -0.60 kcal Total: -15.09 6.59 -8.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_4999870_9435856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.602 kcal (2) G-P(sol) polarization free energy of solvation -15.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -8.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds