Wall clock time and date at job start Sat Mar 6 2021 07:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47113 * 2 1 4 4 C 1.50701 * 109.47201 * 119.99792 * 2 1 3 5 5 C 1.38232 * 119.97343 * 245.00056 * 4 2 1 6 6 C 1.38294 * 120.11124 * 180.02562 * 5 4 2 7 7 C 1.38122 * 120.05499 * 359.97438 * 6 5 4 8 8 C 1.38756 * 119.94212 * 0.28466 * 7 6 5 9 9 O 1.35904 * 120.05096 * 179.71799 * 8 7 6 10 10 C 1.42900 * 117.00131 * 359.97438 * 9 8 7 11 11 F 1.39898 * 109.47016 * 300.00195 * 10 9 8 12 12 F 1.39898 * 109.46979 * 60.00350 * 10 9 8 13 13 C 1.50700 * 109.46759 * 179.97438 * 10 9 8 14 14 O 1.20821 * 120.00212 * 0.02562 * 13 10 9 15 15 O 1.34225 * 119.99623 * 179.97438 * 13 10 9 16 16 C 1.45203 * 116.99920 * 180.02562 * 15 13 10 17 17 C 1.53004 * 109.47313 * 180.02562 * 16 15 13 18 18 H 1.08998 * 112.84777 * 314.66732 * 17 16 15 19 19 C 1.53775 * 113.61300 * 85.86461 * 17 16 15 20 20 C 1.53952 * 87.02115 * 139.95373 * 19 17 16 21 21 H 1.09000 * 113.61694 * 89.19482 * 20 19 17 22 22 O 1.42900 * 113.66737 * 220.07032 * 20 19 17 23 23 C 1.53781 * 113.61307 * 183.47246 * 17 16 15 24 24 C 1.38173 * 119.96798 * 64.98097 * 4 2 1 25 25 H 0.96699 * 114.00084 * 300.00103 * 1 2 3 26 26 H 1.09005 * 109.47206 * 240.00260 * 2 1 3 27 27 H 1.48504 * 110.00175 * 178.68068 * 3 2 1 28 28 H 1.48502 * 110.00293 * 299.99794 * 3 2 1 29 29 H 1.08002 * 119.94710 * 0.02562 * 5 4 2 30 30 H 1.08000 * 119.97251 * 179.97438 * 6 5 4 31 31 H 1.08002 * 120.02504 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47233 * 300.00537 * 16 15 13 33 33 H 1.09003 * 109.47137 * 60.00541 * 16 15 13 34 34 H 1.08998 * 113.61617 * 254.52922 * 19 17 16 35 35 H 1.09005 * 113.61663 * 25.43306 * 19 17 16 36 36 H 0.96701 * 113.99580 * 277.55626 * 22 20 19 37 37 H 1.08996 * 113.61453 * 334.56497 * 23 17 16 38 38 H 1.08997 * 113.61310 * 105.47703 * 23 17 16 39 39 H 1.07997 * 120.02623 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6387 -0.0117 2.1909 6 6 3.1014 -0.6608 3.3209 7 6 2.8573 -2.0094 3.4928 8 6 2.1522 -2.7141 2.5276 9 8 1.9157 -4.0423 2.6917 10 6 2.4226 -4.6493 3.8819 11 9 3.8138 -4.5075 3.9216 12 9 1.8582 -4.0261 5.0000 13 6 2.0659 -6.1135 3.8901 14 8 1.4421 -6.5885 2.9709 15 8 2.4422 -6.8901 4.9182 16 6 2.0645 -8.2909 4.8589 17 6 2.5762 -9.0105 6.1084 18 1 3.6076 -8.7550 6.3514 19 6 1.6193 -8.9168 7.3085 20 6 1.9689 -10.3876 7.5996 21 1 2.8337 -10.5100 8.2517 22 8 0.8482 -11.1731 8.0107 23 6 2.3010 -10.5234 6.1041 24 6 1.6841 -2.0595 1.3979 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4679 -1.2085 29 1 2.8302 1.0430 2.0586 30 1 3.6542 -0.1128 4.0696 31 1 3.2186 -2.5158 4.3757 32 1 0.9786 -8.3728 4.8120 33 1 2.5020 -8.7479 3.9713 34 1 1.9551 -8.2260 8.0819 35 1 0.5778 -8.7633 7.0256 36 1 0.6345 -11.0918 8.9503 37 1 1.4463 -10.8100 5.4914 38 1 3.1864 -11.1277 5.9067 39 1 1.1308 -2.6047 0.6476 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_5054142_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:11:45 Heat of formation + Delta-G solvation = -230.540844 kcal Electronic energy + Delta-G solvation = -28241.087599 eV Core-core repulsion = 23560.444789 eV Total energy + Delta-G solvation = -4680.642810 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.104 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.88073 -48.88035 -42.02722 -41.37089 -40.44007 -39.34919 -38.03296 -37.35312 -36.13735 -32.64454 -31.93776 -30.47833 -28.53102 -27.03381 -26.93030 -24.27708 -23.92806 -23.26418 -22.34464 -20.92348 -20.44213 -19.79524 -19.70732 -18.87004 -18.55658 -18.10957 -17.67037 -17.53123 -17.37565 -16.58178 -16.35998 -16.31938 -16.01677 -15.85927 -15.36320 -15.34370 -15.24044 -15.16292 -15.10032 -14.91501 -14.39554 -14.30229 -14.10429 -13.90096 -13.63605 -13.14964 -13.04912 -12.99289 -12.82762 -12.65338 -12.43467 -12.13445 -12.01654 -11.88916 -11.80290 -11.43698 -10.90524 -10.56368 -10.09032 -9.66995 -5.08253 -0.02054 -0.01137 0.14703 0.30127 1.20680 1.58250 1.61129 1.92508 1.94060 2.44642 2.63093 3.09451 3.14319 3.23939 3.34406 3.36729 3.50537 3.56013 3.61153 3.73155 3.85760 3.90346 3.98802 3.99005 4.07769 4.13559 4.35466 4.38672 4.45130 4.59041 4.60583 4.72170 4.78062 4.81330 4.92121 4.94280 5.13814 5.17146 5.23867 5.31079 5.82461 5.92399 6.50980 6.58500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.070 4.070 3 Si 0.692 3.308 4 C -0.085 4.085 5 C -0.135 4.135 6 C -0.073 4.073 7 C -0.185 4.185 8 C 0.100 3.900 9 O -0.287 6.287 10 C 0.468 3.532 11 F -0.164 7.164 12 F -0.163 7.163 13 C 0.463 3.537 14 O -0.432 6.432 15 O -0.330 6.330 16 C 0.078 3.922 17 C -0.113 4.113 18 H 0.111 0.889 19 C -0.166 4.166 20 C 0.077 3.923 21 H 0.087 0.913 22 O -0.559 6.559 23 C -0.119 4.119 24 C -0.099 4.099 25 H 0.380 0.620 26 H 0.117 0.883 27 H -0.256 1.256 28 H -0.253 1.253 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.382 0.618 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 1.446 5.085 5.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.181 4.181 3 Si 0.594 3.406 4 C -0.086 4.086 5 C -0.152 4.152 6 C -0.091 4.091 7 C -0.204 4.204 8 C 0.058 3.942 9 O -0.205 6.205 10 C 0.393 3.607 11 F -0.145 7.145 12 F -0.145 7.145 13 C 0.298 3.702 14 O -0.315 6.315 15 O -0.246 6.246 16 C 0.006 3.994 17 C -0.131 4.131 18 H 0.129 0.871 19 C -0.204 4.204 20 C 0.018 3.982 21 H 0.105 0.895 22 O -0.365 6.365 23 C -0.156 4.156 24 C -0.118 4.118 25 H 0.228 0.772 26 H 0.135 0.865 27 H -0.181 1.181 28 H -0.178 1.178 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.111 0.889 36 H 0.229 0.771 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.848 1.249 3.095 3.815 hybrid contribution 0.324 -0.425 0.693 0.875 sum 2.172 0.824 3.789 4.444 Atomic orbital electron populations 1.86532 1.16741 1.81709 1.49256 1.25148 0.85516 1.10359 0.97061 0.94687 0.81070 0.77515 0.87351 1.20206 0.98134 0.93375 0.96873 1.21060 0.99868 0.99784 0.94525 1.20952 0.97635 0.93235 0.97238 1.21636 1.02443 0.96596 0.99702 1.18906 0.98434 0.80432 0.96422 1.86619 1.73602 1.22934 1.37358 1.20460 0.75387 0.87741 0.77133 1.93230 1.29473 1.96049 1.95766 1.93230 1.84537 1.83668 1.53031 1.22033 0.79053 0.86997 0.82164 1.90838 1.33249 1.72872 1.34496 1.86501 1.71542 1.23794 1.42743 1.23455 1.01373 0.74611 1.00011 1.22423 1.01414 0.95410 0.93871 0.87115 1.23852 1.00377 0.98032 0.98114 1.23294 0.89268 0.89851 0.95771 0.89550 1.86528 1.49612 1.69329 1.31018 1.23074 1.02950 0.93768 0.95810 1.20270 1.01538 0.93671 0.96313 0.77218 0.86537 1.18081 1.17771 0.84805 0.84358 0.84585 0.89701 0.89643 0.90425 0.88869 0.77064 0.88531 0.89757 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.09 12.83 -35.23 -0.45 -0.54 16 2 C -0.07 0.03 2.80 36.01 0.10 0.13 16 3 Si 0.69 -1.05 29.80 -169.99 -5.07 -6.11 16 4 C -0.09 -0.02 5.35 -104.65 -0.56 -0.58 16 5 C -0.13 0.12 8.67 -39.56 -0.34 -0.23 16 6 C -0.07 0.04 10.04 -39.60 -0.40 -0.36 16 7 C -0.19 -0.23 8.26 -39.43 -0.33 -0.55 16 8 C 0.10 0.26 6.48 -39.22 -0.25 0.01 16 9 O -0.29 -1.02 9.60 -39.39 -0.38 -1.40 16 10 C 0.47 1.10 2.16 36.01 0.08 1.17 16 11 F -0.16 -0.32 15.29 2.25 0.03 -0.28 16 12 F -0.16 -0.30 15.29 2.25 0.03 -0.27 16 13 C 0.46 1.17 7.47 36.01 0.27 1.44 16 14 O -0.43 -1.99 16.25 -25.47 -0.41 -2.41 16 15 O -0.33 -0.33 10.22 -39.24 -0.40 -0.74 16 16 C 0.08 -0.06 5.29 37.16 0.20 0.14 16 17 C -0.11 0.23 4.01 -89.81 -0.36 -0.13 16 18 H 0.11 -0.30 8.14 -51.93 -0.42 -0.72 16 19 C -0.17 0.30 7.48 -25.83 -0.19 0.11 16 20 C 0.08 -0.13 5.21 -25.83 -0.13 -0.26 16 21 H 0.09 -0.26 8.14 -51.93 -0.42 -0.69 16 22 O -0.56 0.08 13.67 -35.23 -0.48 -0.40 16 23 C -0.12 0.22 7.48 -25.92 -0.19 0.02 16 24 C -0.10 -0.19 9.62 -39.43 -0.38 -0.57 16 25 H 0.38 -1.44 8.70 45.56 0.40 -1.05 16 26 H 0.12 0.00 7.96 -51.93 -0.41 -0.41 16 27 H -0.26 -0.20 7.11 56.52 0.40 0.20 16 28 H -0.25 -0.46 7.11 56.52 0.40 -0.06 16 29 H 0.13 -0.43 4.90 -52.49 -0.26 -0.69 16 30 H 0.14 -0.41 8.06 -52.49 -0.42 -0.84 16 31 H 0.14 0.09 5.10 -52.49 -0.27 -0.18 16 32 H 0.08 -0.07 7.87 -51.93 -0.41 -0.48 16 33 H 0.09 -0.11 8.13 -51.93 -0.42 -0.53 16 34 H 0.08 -0.17 8.14 -51.93 -0.42 -0.60 16 35 H 0.09 -0.10 7.92 -51.93 -0.41 -0.51 16 36 H 0.38 -1.56 9.12 45.56 0.42 -1.14 16 37 H 0.10 -0.11 8.10 -51.93 -0.42 -0.53 16 38 H 0.08 -0.22 8.14 -51.93 -0.42 -0.65 16 39 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 343.98 15.07 5.18 5.18 Total: 0.00 -7.70 343.98 -7.96 -15.66 By element: Atomic # 1 Polarization: -5.51 SS G_CDS: -3.52 Total: -9.03 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.50 Total: 0.34 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -2.13 Total: -5.48 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 0.07 Total: -0.55 kcal Atomic # 14 Polarization: -1.05 SS G_CDS: -5.07 Total: -6.11 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -7.70 -7.96 -15.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.885 kcal (2) G-P(sol) polarization free energy of solvation -7.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds