Wall clock time and date at job start Sat Mar 6 2021 07:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.47113 * 2 1 4 4 C 1.50701 * 109.47201 * 119.99792 * 2 1 3 5 5 C 1.38232 * 119.97343 * 245.00056 * 4 2 1 6 6 C 1.38294 * 120.11124 * 180.02562 * 5 4 2 7 7 C 1.38122 * 120.05499 * 359.97438 * 6 5 4 8 8 C 1.38756 * 119.94212 * 0.28466 * 7 6 5 9 9 O 1.35904 * 120.05096 * 179.71799 * 8 7 6 10 10 C 1.42900 * 117.00131 * 359.97438 * 9 8 7 11 11 F 1.39898 * 109.47016 * 300.00195 * 10 9 8 12 12 F 1.39898 * 109.46979 * 60.00350 * 10 9 8 13 13 C 1.50700 * 109.46759 * 179.97438 * 10 9 8 14 14 O 1.20821 * 120.00212 * 0.02562 * 13 10 9 15 15 O 1.34225 * 119.99623 * 179.97438 * 13 10 9 16 16 C 1.45203 * 116.99920 * 180.02562 * 15 13 10 17 17 C 1.53004 * 109.47313 * 180.02562 * 16 15 13 18 18 H 1.08998 * 112.84777 * 314.66732 * 17 16 15 19 19 C 1.53775 * 113.61300 * 85.86461 * 17 16 15 20 20 C 1.53952 * 87.02115 * 139.95373 * 19 17 16 21 21 H 1.09000 * 113.61694 * 89.19482 * 20 19 17 22 22 O 1.42900 * 113.66737 * 220.07032 * 20 19 17 23 23 C 1.53781 * 113.61307 * 183.47246 * 17 16 15 24 24 C 1.38173 * 119.96798 * 64.98097 * 4 2 1 25 25 H 0.96699 * 114.00084 * 300.00103 * 1 2 3 26 26 H 1.09005 * 109.47206 * 240.00260 * 2 1 3 27 27 H 1.48504 * 110.00175 * 178.68068 * 3 2 1 28 28 H 1.48502 * 110.00293 * 299.99794 * 3 2 1 29 29 H 1.08002 * 119.94710 * 0.02562 * 5 4 2 30 30 H 1.08000 * 119.97251 * 179.97438 * 6 5 4 31 31 H 1.08002 * 120.02504 * 180.02562 * 7 6 5 32 32 H 1.08996 * 109.47233 * 300.00537 * 16 15 13 33 33 H 1.09003 * 109.47137 * 60.00541 * 16 15 13 34 34 H 1.08998 * 113.61617 * 254.52922 * 19 17 16 35 35 H 1.09005 * 113.61663 * 25.43306 * 19 17 16 36 36 H 0.96701 * 113.99580 * 277.55626 * 22 20 19 37 37 H 1.08996 * 113.61453 * 334.56497 * 23 17 16 38 38 H 1.08997 * 113.61310 * 105.47703 * 23 17 16 39 39 H 1.07997 * 120.02623 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6387 -0.0117 2.1909 6 6 3.1014 -0.6608 3.3209 7 6 2.8573 -2.0094 3.4928 8 6 2.1522 -2.7141 2.5276 9 8 1.9157 -4.0423 2.6917 10 6 2.4226 -4.6493 3.8819 11 9 3.8138 -4.5075 3.9216 12 9 1.8582 -4.0261 5.0000 13 6 2.0659 -6.1135 3.8901 14 8 1.4421 -6.5885 2.9709 15 8 2.4422 -6.8901 4.9182 16 6 2.0645 -8.2909 4.8589 17 6 2.5762 -9.0105 6.1084 18 1 3.6076 -8.7550 6.3514 19 6 1.6193 -8.9168 7.3085 20 6 1.9689 -10.3876 7.5996 21 1 2.8337 -10.5100 8.2517 22 8 0.8482 -11.1731 8.0107 23 6 2.3010 -10.5234 6.1041 24 6 1.6841 -2.0595 1.3979 25 1 -0.3933 0.4417 0.7650 26 1 1.7923 -0.5138 -0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5615 2.4679 -1.2085 29 1 2.8302 1.0430 2.0586 30 1 3.6542 -0.1128 4.0696 31 1 3.2186 -2.5158 4.3757 32 1 0.9786 -8.3728 4.8120 33 1 2.5020 -8.7479 3.9713 34 1 1.9551 -8.2260 8.0819 35 1 0.5778 -8.7633 7.0256 36 1 0.6345 -11.0918 8.9503 37 1 1.4463 -10.8100 5.4914 38 1 3.1864 -11.1277 5.9067 39 1 1.1308 -2.6047 0.6476 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_5054142_11354868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:11:45 Heat of formation + Delta-G solvation = -229.485199 kcal Electronic energy + Delta-G solvation = -28241.041823 eV Core-core repulsion = 23560.444789 eV Total energy + Delta-G solvation = -4680.597034 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.104 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.04480 -49.04116 -42.18870 -41.44101 -40.34621 -39.41603 -38.17101 -37.36339 -36.06139 -32.65361 -31.99912 -30.50413 -28.60252 -27.03556 -26.78310 -24.30935 -23.95548 -23.24493 -22.44426 -20.89867 -20.46515 -19.96463 -19.81198 -18.94347 -18.51384 -18.13622 -17.78118 -17.56959 -17.42489 -16.46098 -16.38710 -16.35053 -16.11352 -15.94508 -15.49650 -15.34636 -15.27801 -15.24702 -15.20249 -14.89623 -14.47716 -14.38927 -14.14110 -13.92562 -13.50683 -13.18127 -13.06861 -12.94716 -12.84602 -12.58879 -12.38971 -12.25421 -12.06553 -11.81563 -11.79619 -11.29777 -10.77172 -10.53871 -10.11170 -9.71977 -4.98606 -0.15123 -0.05846 0.06551 0.16808 1.26027 1.47535 1.66403 1.77176 1.98932 2.42866 2.55277 2.98458 3.24863 3.35492 3.40832 3.48796 3.54441 3.58571 3.72912 3.87743 3.89173 4.00886 4.01772 4.07437 4.08348 4.19480 4.35363 4.44537 4.48606 4.71940 4.73035 4.77218 4.79725 4.93692 4.96117 5.06395 5.13654 5.23915 5.29639 5.32789 5.76642 5.79723 6.74180 6.86673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.082 4.082 3 Si 0.792 3.208 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.069 4.069 7 C -0.195 4.195 8 C 0.077 3.923 9 O -0.304 6.304 10 C 0.471 3.529 11 F -0.162 7.162 12 F -0.161 7.161 13 C 0.468 3.532 14 O -0.459 6.459 15 O -0.325 6.325 16 C 0.071 3.929 17 C -0.105 4.105 18 H 0.122 0.878 19 C -0.166 4.166 20 C 0.075 3.925 21 H 0.104 0.896 22 O -0.582 6.582 23 C -0.121 4.121 24 C -0.117 4.117 25 H 0.397 0.603 26 H 0.107 0.893 27 H -0.280 1.280 28 H -0.300 1.300 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.139 0.861 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.396 0.604 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.446 2.465 6.248 7.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.191 4.191 3 Si 0.697 3.303 4 C -0.086 4.086 5 C -0.147 4.147 6 C -0.086 4.086 7 C -0.213 4.213 8 C 0.035 3.965 9 O -0.223 6.223 10 C 0.396 3.604 11 F -0.143 7.143 12 F -0.142 7.142 13 C 0.304 3.696 14 O -0.343 6.343 15 O -0.241 6.241 16 C -0.001 4.001 17 C -0.123 4.123 18 H 0.140 0.860 19 C -0.204 4.204 20 C 0.016 3.984 21 H 0.121 0.879 22 O -0.391 6.391 23 C -0.159 4.159 24 C -0.135 4.135 25 H 0.247 0.753 26 H 0.125 0.875 27 H -0.206 1.206 28 H -0.228 1.228 29 H 0.179 0.821 30 H 0.186 0.814 31 H 0.156 0.844 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.246 0.754 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.728 2.248 4.309 5.573 hybrid contribution 0.025 -0.748 0.313 0.811 sum 2.753 1.500 4.622 5.585 Atomic orbital electron populations 1.86493 1.17077 1.82265 1.50519 1.25408 0.85475 1.11683 0.96510 0.93586 0.77845 0.74001 0.84884 1.20333 0.98152 0.92763 0.97394 1.21372 0.98607 1.00993 0.93770 1.21340 0.96946 0.92553 0.97807 1.21794 1.02513 0.97526 0.99504 1.19158 0.99739 0.80223 0.97343 1.86590 1.74036 1.23765 1.37885 1.20369 0.75453 0.87578 0.77035 1.93227 1.29269 1.96038 1.95761 1.93228 1.84528 1.83614 1.52834 1.22112 0.78408 0.87148 0.81977 1.90821 1.34596 1.73374 1.35511 1.86511 1.71097 1.24533 1.41969 1.23676 1.01507 0.73786 1.01121 1.22420 1.01868 0.95052 0.93002 0.85960 1.23832 0.99843 0.98352 0.98363 1.23428 0.89436 0.89500 0.96006 0.87856 1.86484 1.50293 1.69732 1.32583 1.23100 1.03024 0.93912 0.95850 1.20347 1.02313 0.94572 0.96292 0.75293 0.87533 1.20630 1.22830 0.82084 0.81384 0.84354 0.89922 0.89117 0.89752 0.89942 0.75385 0.89561 0.88721 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.37 12.83 -148.98 -1.91 -2.28 16 2 C -0.08 0.05 2.80 71.24 0.20 0.25 16 3 Si 0.79 -3.02 29.80 68.60 2.04 -0.98 16 4 C -0.09 -0.05 5.35 -19.88 -0.11 -0.16 16 5 C -0.13 0.41 8.67 22.28 0.19 0.61 16 6 C -0.07 0.18 10.04 22.26 0.22 0.40 16 7 C -0.19 -0.48 8.26 22.37 0.18 -0.29 16 8 C 0.08 0.50 6.48 22.51 0.15 0.64 16 9 O -0.30 -2.72 9.60 -73.39 -0.70 -3.42 16 10 C 0.47 2.75 2.16 71.24 0.15 2.90 16 11 F -0.16 -0.74 15.29 44.97 0.69 -0.06 16 12 F -0.16 -0.72 15.29 44.97 0.69 -0.03 16 13 C 0.47 2.97 7.47 71.24 0.53 3.51 16 14 O -0.46 -5.05 16.25 28.41 0.46 -4.59 16 15 O -0.33 -0.87 10.22 -51.37 -0.53 -1.39 16 16 C 0.07 -0.06 5.29 71.98 0.38 0.33 16 17 C -0.11 0.43 4.01 -10.27 -0.04 0.39 16 18 H 0.12 -0.76 8.14 -2.39 -0.02 -0.78 16 19 C -0.17 0.59 7.48 31.18 0.23 0.83 16 20 C 0.08 -0.27 5.21 31.18 0.16 -0.11 16 21 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 22 O -0.58 0.10 13.67 -148.98 -2.04 -1.94 16 23 C -0.12 0.44 7.48 31.12 0.23 0.67 16 24 C -0.12 -0.60 9.62 22.37 0.22 -0.39 16 25 H 0.40 -3.12 8.70 -74.06 -0.64 -3.76 16 26 H 0.11 0.11 7.96 -2.38 -0.02 0.09 16 27 H -0.28 -0.07 7.11 99.48 0.71 0.64 16 28 H -0.30 -1.24 7.11 99.48 0.71 -0.54 16 29 H 0.16 -1.47 4.90 -2.91 -0.01 -1.48 16 30 H 0.17 -1.48 8.06 -2.91 -0.02 -1.50 16 31 H 0.14 0.19 5.10 -2.91 -0.01 0.18 16 32 H 0.08 -0.02 7.87 -2.39 -0.02 -0.04 16 33 H 0.09 -0.16 8.13 -2.39 -0.02 -0.18 16 34 H 0.08 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.08 -0.11 7.92 -2.38 -0.02 -0.13 16 36 H 0.40 -3.21 9.12 -74.06 -0.68 -3.88 16 37 H 0.09 -0.13 8.10 -2.39 -0.02 -0.15 16 38 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.13 0.81 8.06 -2.91 -0.02 0.79 16 Total: 0.00 -18.90 343.98 1.26 -17.64 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -0.15 Total: -12.52 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 2.71 Total: 9.57 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -4.72 Total: -13.63 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 1.38 Total: -0.09 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.04 Total: -0.98 kcal Total: -18.90 1.26 -17.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_11354868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.845 kcal (2) G-P(sol) polarization free energy of solvation -18.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -229.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds