Wall clock time and date at job start Sat Mar 6 2021 07:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86295 * 109.47470 * 2 1 4 4 C 1.50704 * 109.46791 * 119.99594 * 2 1 3 5 5 C 1.38244 * 119.97444 * 245.00011 * 4 2 1 6 6 C 1.38289 * 120.11248 * 179.97438 * 5 4 2 7 7 C 1.38123 * 120.05526 * 0.03846 * 6 5 4 8 8 C 1.38756 * 119.94251 * 359.97438 * 7 6 5 9 9 O 1.35902 * 120.05146 * 180.02562 * 8 7 6 10 10 C 1.42899 * 117.00081 * 0.02562 * 9 8 7 11 11 F 1.39900 * 109.47207 * 60.00270 * 10 9 8 12 12 F 1.39902 * 109.47315 * 299.99734 * 10 9 8 13 13 C 1.50701 * 109.46935 * 180.02562 * 10 9 8 14 14 O 1.20824 * 120.00121 * 0.02562 * 13 10 9 15 15 O 1.34235 * 119.99849 * 180.02562 * 13 10 9 16 16 C 1.45199 * 116.99751 * 179.97438 * 15 13 10 17 17 C 1.52997 * 109.47054 * 179.97438 * 16 15 13 18 18 H 1.09002 * 109.47497 * 54.99789 * 17 16 15 19 19 C 1.53002 * 109.47415 * 175.00141 * 17 16 15 20 20 C 1.53000 * 109.47233 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47060 * 299.99657 * 20 19 17 22 22 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 23 23 O 1.42895 * 109.47503 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.47317 * 59.99960 * 21 20 19 25 25 C 1.52997 * 109.47232 * 295.00015 * 17 16 15 26 26 C 1.38172 * 119.97275 * 65.30002 * 4 2 1 27 27 H 0.96697 * 114.00472 * 300.00614 * 1 2 3 28 28 H 1.09002 * 109.47632 * 239.99313 * 2 1 3 29 29 H 1.48503 * 110.00153 * 178.67768 * 3 2 1 30 30 H 1.48503 * 109.99807 * 299.99849 * 3 2 1 31 31 H 1.08001 * 119.93869 * 359.97438 * 5 4 2 32 32 H 1.08000 * 119.97103 * 180.02562 * 6 5 4 33 33 H 1.07991 * 120.02686 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47354 * 60.00172 * 16 15 13 35 35 H 1.09001 * 109.47208 * 299.99880 * 16 15 13 36 36 H 1.08992 * 109.47063 * 59.99950 * 19 17 16 37 37 H 1.09004 * 109.46733 * 299.99664 * 19 17 16 38 38 H 1.09002 * 109.47398 * 59.99826 * 20 19 17 39 39 H 1.09001 * 109.47194 * 180.02562 * 20 19 17 40 40 H 0.96698 * 114.00355 * 180.02562 * 23 21 20 41 41 H 1.09000 * 109.47486 * 180.02562 * 24 21 20 42 42 H 1.09002 * 109.46716 * 60.00091 * 24 21 20 43 43 H 1.09002 * 109.47153 * 299.99992 * 25 17 16 44 44 H 1.09001 * 109.47289 * 60.00075 * 25 17 16 45 45 H 1.08008 * 120.02603 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6386 -0.0116 2.1911 6 6 3.1003 -0.6605 3.3216 7 6 2.8564 -2.0091 3.4934 8 6 2.1469 -2.7127 2.5307 9 8 1.9051 -4.0396 2.6977 10 6 2.4104 -4.6462 3.8888 11 9 1.8492 -4.0184 5.0060 12 9 3.8022 -4.5100 3.9273 13 6 2.0489 -6.1092 3.8997 14 8 1.4232 -6.5837 2.9814 15 8 2.4220 -6.8850 4.9296 16 6 2.0387 -8.2844 4.8733 17 6 2.5486 -9.0035 6.1239 18 1 2.1846 -8.4886 7.0130 19 6 2.0396 -10.4463 6.1258 20 6 2.5490 -11.1652 7.3767 21 6 4.0789 -11.1643 7.3779 22 1 4.4433 -11.6793 6.4891 23 8 4.5548 -11.8361 8.5459 24 6 4.5881 -9.7215 7.3760 25 6 4.0786 -9.0025 6.1246 26 6 1.6897 -2.0608 1.3949 27 1 -0.3934 0.4418 0.7649 28 1 1.7924 -0.5139 -0.8899 29 1 3.5347 1.7701 0.0322 30 1 1.5616 2.4678 -1.2085 31 1 2.8308 1.0428 2.0582 32 1 3.6523 -0.1123 4.0707 33 1 3.2175 -2.5154 4.3762 34 1 2.4744 -8.7451 3.9868 35 1 0.9525 -8.3620 4.8266 36 1 2.4036 -10.9612 5.2368 37 1 0.9495 -10.4470 6.1254 38 1 2.1846 -10.6501 8.2655 39 1 2.1867 -12.1932 7.3778 40 1 5.5187 -11.8733 8.6130 41 1 5.6781 -9.7208 7.3764 42 1 4.2237 -9.2064 8.2648 43 1 4.4427 -9.5175 5.2355 44 1 4.4413 -7.9746 6.1232 45 1 1.1409 -2.6073 0.6421 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_5054142_16737258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:17:19 Heat of formation + Delta-G solvation = -271.104564 kcal Electronic energy + Delta-G solvation = -32377.528317 eV Core-core repulsion = 27384.051294 eV Total energy + Delta-G solvation = -4993.477023 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.136 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -51.03338 -49.03138 -42.16719 -41.43446 -40.15822 -39.41219 -38.27152 -37.36532 -36.70815 -32.65576 -32.29449 -31.84663 -31.81697 -29.37329 -27.08994 -26.60064 -24.06896 -23.95078 -23.66034 -22.46906 -22.29823 -21.00241 -20.58380 -19.94800 -19.82918 -18.83360 -18.23006 -18.13527 -17.78012 -17.59886 -17.42180 -16.60162 -16.40339 -16.26073 -16.08427 -15.94245 -15.52942 -15.48622 -15.35208 -15.30449 -15.24509 -14.96533 -14.83531 -14.50828 -14.43675 -14.22289 -14.09226 -13.76218 -13.26427 -13.19357 -13.16893 -13.04325 -12.84862 -12.71233 -12.37905 -12.17062 -12.07920 -12.00486 -11.80709 -11.75126 -11.63314 -11.12652 -10.73121 -10.53454 -10.11238 -9.71642 -4.98546 -0.12972 -0.05249 0.07823 0.17672 1.26294 1.48699 1.66382 1.79238 1.98934 2.43119 2.60035 2.99536 3.19370 3.40958 3.53739 3.55900 3.58648 3.62854 3.67187 3.89336 3.95736 4.01452 4.06239 4.07689 4.13757 4.27814 4.29891 4.35563 4.40054 4.42913 4.44823 4.46685 4.67532 4.79653 4.79923 4.93872 4.94392 5.04312 5.06183 5.13286 5.14014 5.14802 5.24142 5.27857 5.29994 5.40367 5.79086 5.80463 6.74251 6.85209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.555 6.555 2 C -0.081 4.081 3 Si 0.791 3.209 4 C -0.086 4.086 5 C -0.130 4.130 6 C -0.069 4.069 7 C -0.195 4.195 8 C 0.078 3.922 9 O -0.304 6.304 10 C 0.470 3.530 11 F -0.161 7.161 12 F -0.163 7.163 13 C 0.469 3.531 14 O -0.457 6.457 15 O -0.326 6.326 16 C 0.064 3.936 17 C -0.084 4.084 18 H 0.088 0.912 19 C -0.104 4.104 20 C -0.113 4.113 21 C 0.099 3.901 22 H 0.062 0.938 23 O -0.591 6.591 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.116 4.116 27 H 0.397 0.603 28 H 0.108 0.892 29 H -0.280 1.280 30 H -0.300 1.300 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.393 0.607 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 2.185 3.452 4.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.190 4.190 3 Si 0.696 3.304 4 C -0.086 4.086 5 C -0.148 4.148 6 C -0.087 4.087 7 C -0.213 4.213 8 C 0.036 3.964 9 O -0.222 6.222 10 C 0.394 3.606 11 F -0.143 7.143 12 F -0.144 7.144 13 C 0.305 3.695 14 O -0.342 6.342 15 O -0.242 6.242 16 C -0.008 4.008 17 C -0.102 4.102 18 H 0.106 0.894 19 C -0.142 4.142 20 C -0.150 4.150 21 C 0.041 3.959 22 H 0.080 0.920 23 O -0.399 6.399 24 C -0.184 4.184 25 C -0.152 4.152 26 C -0.135 4.135 27 H 0.247 0.753 28 H 0.125 0.875 29 H -0.207 1.207 30 H -0.228 1.228 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.243 0.757 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.696 2.072 2.243 3.493 hybrid contribution 0.746 -0.812 -0.217 1.124 sum 2.442 1.260 2.026 3.414 Atomic orbital electron populations 1.86491 1.17069 1.82255 1.50523 1.25395 0.85476 1.11633 0.96522 0.93589 0.77854 0.74070 0.84907 1.20334 0.98148 0.92751 0.97409 1.21371 0.98601 1.00998 0.93793 1.21334 0.96991 0.92567 0.97795 1.21787 1.02437 0.97528 0.99591 1.19149 0.99712 0.80306 0.97253 1.86588 1.73902 1.23846 1.37877 1.20412 0.75440 0.87688 0.77023 1.93229 1.84661 1.83450 1.52931 1.93226 1.29286 1.96104 1.95765 1.22056 0.78432 0.87021 0.82021 1.90820 1.34485 1.73268 1.35587 1.86503 1.71097 1.24749 1.41867 1.23756 1.01982 0.73792 1.01285 1.21289 0.96713 0.95888 0.96348 0.89393 1.21445 1.01819 0.92607 0.98313 1.21456 0.93636 1.01380 0.98569 1.21932 0.94921 0.91506 0.87564 0.91983 1.86480 1.28476 1.79571 1.45387 1.22219 1.01458 0.96052 0.98689 1.21574 0.94006 1.01295 0.98308 1.20349 1.02432 0.94563 0.96143 0.75297 0.87497 1.20655 1.22804 0.82120 0.81451 0.84401 0.89266 0.89123 0.90192 0.89648 0.91688 0.91101 0.75732 0.90611 0.91726 0.90843 0.91205 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.24 12.84 -148.98 -1.91 -2.16 16 2 C -0.08 0.06 2.80 71.24 0.20 0.26 16 3 Si 0.79 -3.10 29.80 68.60 2.04 -1.05 16 4 C -0.09 -0.03 5.35 -19.88 -0.11 -0.14 16 5 C -0.13 0.43 8.67 22.28 0.19 0.62 16 6 C -0.07 0.18 10.04 22.25 0.22 0.40 16 7 C -0.19 -0.45 8.26 22.37 0.18 -0.26 16 8 C 0.08 0.47 6.48 22.50 0.15 0.62 16 9 O -0.30 -2.55 9.60 -73.37 -0.70 -3.26 16 10 C 0.47 2.50 2.16 71.24 0.15 2.65 16 11 F -0.16 -0.68 15.30 44.97 0.69 0.01 16 12 F -0.16 -0.69 15.29 44.97 0.69 0.00 16 13 C 0.47 2.52 7.47 71.24 0.53 3.06 16 14 O -0.46 -4.46 16.25 28.40 0.46 -4.00 16 15 O -0.33 -0.55 9.76 -51.47 -0.50 -1.05 16 16 C 0.06 -0.16 4.84 71.98 0.35 0.19 16 17 C -0.08 0.37 2.43 -10.79 -0.03 0.34 16 18 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 19 C -0.10 0.58 5.20 30.60 0.16 0.74 16 20 C -0.11 0.24 5.57 30.59 0.17 0.41 16 21 C 0.10 -0.20 3.47 30.59 0.11 -0.09 16 22 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 23 O -0.59 -0.67 13.32 -148.98 -1.98 -2.66 16 24 C -0.15 0.51 5.55 30.61 0.17 0.68 16 25 C -0.11 0.46 5.11 30.61 0.16 0.61 16 26 C -0.12 -0.56 9.63 22.36 0.22 -0.35 16 27 H 0.40 -3.19 8.70 -74.06 -0.64 -3.83 16 28 H 0.11 0.08 7.96 -2.39 -0.02 0.06 16 29 H -0.28 -0.05 7.11 99.48 0.71 0.65 16 30 H -0.30 -1.21 7.11 99.48 0.71 -0.50 16 31 H 0.16 -1.47 4.90 -2.91 -0.01 -1.49 16 32 H 0.17 -1.47 8.06 -2.91 -0.02 -1.49 16 33 H 0.14 0.18 5.10 -2.91 -0.01 0.17 16 34 H 0.09 -0.30 8.13 -2.39 -0.02 -0.32 16 35 H 0.09 -0.31 8.13 -2.39 -0.02 -0.33 16 36 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.06 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.39 -2.55 9.08 -74.06 -0.67 -3.22 16 41 H 0.08 -0.38 8.14 -2.39 -0.02 -0.39 16 42 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 44 H 0.07 -0.18 7.82 -2.39 -0.02 -0.20 16 45 H 0.13 0.76 8.06 -2.91 -0.02 0.73 16 Total: 0.00 -18.33 378.62 1.37 -16.96 By element: Atomic # 1 Polarization: -12.33 SS G_CDS: -0.23 Total: -12.56 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 2.83 Total: 9.76 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -4.64 Total: -13.12 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 1.38 Total: 0.01 kcal Atomic # 14 Polarization: -3.10 SS G_CDS: 2.04 Total: -1.05 kcal Total: -18.33 1.37 -16.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_16737258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -254.144 kcal (2) G-P(sol) polarization free energy of solvation -18.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds