Wall clock time and date at job start Sat Mar 6 2021 07:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 113.99856 * 2 1 4 4 C 1.53004 * 112.84650 * 65.98561 * 3 2 1 5 5 F 1.39898 * 109.47106 * 283.51204 * 4 3 2 6 6 F 1.39899 * 109.47323 * 43.51689 * 4 3 2 7 7 F 1.39904 * 109.46506 * 163.51549 * 4 3 2 8 8 C 1.53776 * 113.61226 * 294.79032 * 3 2 1 9 9 C 1.53781 * 87.08282 * 270.79905 * 8 3 2 10 10 H 1.08998 * 113.61921 * 219.94015 * 9 8 3 11 11 C 1.52998 * 113.61163 * 89.11841 * 9 8 3 12 12 O 1.45209 * 109.47019 * 176.53490 * 11 9 8 13 13 C 1.34225 * 117.00193 * 180.02562 * 12 11 9 14 14 O 1.20828 * 119.99462 * 359.97438 * 13 12 11 15 15 C 1.50692 * 120.00313 * 179.97438 * 13 12 11 16 16 F 1.39902 * 109.47100 * 59.99977 * 15 13 12 17 17 F 1.39900 * 109.47031 * 300.00104 * 15 13 12 18 18 O 1.42903 * 109.47463 * 179.97438 * 15 13 12 19 19 C 1.35895 * 116.99838 * 180.02562 * 18 15 13 20 20 C 1.38716 * 120.05333 * 180.02562 * 19 18 15 21 21 C 1.38166 * 119.94499 * 180.22945 * 20 19 18 22 22 C 1.50698 * 119.97165 * 179.74720 * 21 20 19 23 23 O 1.42902 * 109.46939 * 299.99419 * 22 21 20 24 24 Si 1.86301 * 109.46920 * 180.02562 * 22 21 20 25 25 C 1.38246 * 120.05160 * 359.51109 * 21 20 19 26 26 C 1.38282 * 120.11298 * 0.46808 * 25 21 20 27 27 C 1.38121 * 120.05669 * 359.78443 * 26 25 21 28 28 C 1.53786 * 87.17072 * 334.52669 * 9 8 3 29 29 H 1.09004 * 109.47357 * 182.49372 * 1 2 3 30 30 H 1.08999 * 109.47580 * 302.49068 * 1 2 3 31 31 H 1.09000 * 109.46986 * 62.49607 * 1 2 3 32 32 H 1.09005 * 113.61424 * 156.25557 * 8 3 2 33 33 H 1.09000 * 113.69812 * 25.36010 * 8 3 2 34 34 H 1.08994 * 109.47339 * 56.53314 * 11 9 8 35 35 H 1.09000 * 109.47150 * 296.52486 * 11 9 8 36 36 H 1.08002 * 120.02864 * 359.94885 * 20 19 18 37 37 H 1.08994 * 109.47388 * 59.99887 * 22 21 20 38 38 H 0.96698 * 114.00766 * 300.00617 * 23 22 21 39 39 H 1.48493 * 110.00373 * 58.67912 * 24 22 21 40 40 H 1.48502 * 109.99959 * 180.02562 * 24 22 21 41 41 H 1.08002 * 119.93985 * 180.20771 * 25 21 20 42 42 H 1.08006 * 119.96847 * 179.76641 * 26 25 21 43 43 H 1.08004 * 120.02912 * 179.97438 * 27 26 25 44 44 H 1.09002 * 113.60894 * 140.01805 * 28 9 8 45 45 H 1.08997 * 113.61832 * 270.92134 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7276 2.0816 1.2880 5 9 0.4113 2.5549 1.2679 6 9 1.9028 1.2370 2.3894 7 9 2.6105 3.1626 1.3841 8 6 1.7210 2.1085 -1.2792 9 6 2.9981 1.4841 -1.8658 10 1 3.5936 2.1808 -2.4556 11 6 2.7566 0.1542 -2.5826 12 8 4.0002 -0.3122 -3.1694 13 6 3.9597 -1.4745 -3.8395 14 8 2.9196 -2.0822 -3.9324 15 6 5.2114 -2.0213 -4.4761 16 9 6.1815 -2.2331 -3.4905 17 9 5.6945 -1.1054 -5.4168 18 8 4.9141 -3.2593 -5.1250 19 6 5.9417 -3.8891 -5.7527 20 6 5.7240 -5.0947 -6.4034 21 6 6.7714 -5.7355 -7.0368 22 6 6.5368 -7.0481 -7.7390 23 8 6.0596 -8.0127 -6.7988 24 14 8.1351 -7.6475 -8.4854 25 6 8.0334 -5.1711 -7.0312 26 6 8.2529 -3.9691 -6.3837 27 6 7.2103 -3.3272 -5.7445 28 6 3.4926 1.3230 -0.4185 29 1 -0.3634 -1.0267 0.0447 30 1 -0.3634 0.5520 0.8668 31 1 -0.3633 0.4746 -0.9115 32 1 1.7863 3.1878 -1.1413 33 1 0.8096 1.8017 -1.7923 34 1 2.0143 0.2945 -3.3683 35 1 2.3934 -0.5835 -1.8671 36 1 4.7375 -5.5344 -6.4109 37 1 5.7962 -6.9114 -8.5269 38 1 6.6691 -8.1849 -6.0681 39 1 9.1623 -7.8075 -7.4250 40 1 7.9170 -8.9410 -9.1814 41 1 8.8501 -5.6719 -7.5298 42 1 9.2406 -3.5322 -6.3775 43 1 7.3823 -2.3886 -5.2385 44 1 4.0103 0.3812 -0.2364 45 1 4.0414 2.1878 -0.0458 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_5054142_17321610.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:45:54 Heat of formation + Delta-G solvation = -358.901569 kcal Electronic energy + Delta-G solvation = -40717.136809 eV Core-core repulsion = 34311.490695 eV Total energy + Delta-G solvation = -6405.646114 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.107 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -51.27316 -51.00839 -49.00476 -48.80414 -48.74546 -42.25029 -41.46606 -41.20080 -39.44271 -38.26301 -37.48513 -37.06096 -32.65509 -32.00121 -31.08286 -29.27435 -28.20287 -27.32525 -26.98887 -26.80028 -24.01381 -23.92052 -23.31250 -22.42046 -20.87349 -20.59576 -19.94767 -19.87239 -19.70530 -19.56056 -19.28287 -18.77831 -18.21380 -17.76319 -17.61561 -17.42487 -17.21630 -16.53841 -16.39749 -16.37962 -16.09300 -15.96348 -15.78161 -15.68714 -15.62569 -15.45735 -15.43638 -15.28732 -15.22636 -15.14874 -14.97911 -14.90857 -14.85379 -14.80813 -14.42871 -14.29111 -14.15040 -13.97006 -13.44715 -13.22695 -13.16333 -13.06125 -12.84837 -12.81828 -12.54321 -12.30843 -12.10834 -12.05020 -11.92462 -11.70056 -11.66726 -10.85351 -10.72890 -10.08318 -9.70238 -4.89850 -0.12715 -0.03417 0.09989 0.19807 1.26879 1.49908 1.51264 1.63228 1.79855 1.98976 2.04681 2.44558 2.49496 2.57811 2.61208 2.86263 3.01891 3.24095 3.32307 3.35127 3.46064 3.51891 3.55886 3.59662 3.91192 4.02878 4.08541 4.09725 4.13312 4.21879 4.24398 4.34508 4.38175 4.48580 4.53261 4.53486 4.64664 4.68163 4.78792 4.80262 4.82767 4.95772 4.99663 5.15975 5.26215 5.31054 5.67194 5.80224 5.82086 6.45682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.349 6.349 3 C 0.029 3.971 4 C 0.434 3.566 5 F -0.184 7.184 6 F -0.189 7.189 7 F -0.174 7.174 8 C -0.131 4.131 9 C -0.094 4.094 10 H 0.130 0.870 11 C 0.070 3.930 12 O -0.324 6.324 13 C 0.469 3.531 14 O -0.456 6.456 15 C 0.471 3.529 16 F -0.163 7.163 17 F -0.160 7.160 18 O -0.304 6.304 19 C 0.078 3.922 20 C -0.115 4.115 21 C -0.083 4.083 22 C -0.090 4.090 23 O -0.549 6.549 24 Si 0.781 3.219 25 C -0.132 4.132 26 C -0.069 4.069 27 C -0.194 4.194 28 C -0.115 4.115 29 H 0.108 0.892 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.387 0.613 39 H -0.276 1.276 40 H -0.304 1.304 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.139 0.861 44 H 0.091 0.909 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 4.292 -3.538 6.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.267 6.267 3 C -0.013 4.013 4 C 0.379 3.621 5 F -0.166 7.166 6 F -0.170 7.170 7 F -0.156 7.156 8 C -0.168 4.168 9 C -0.112 4.112 10 H 0.148 0.852 11 C -0.002 4.002 12 O -0.240 6.240 13 C 0.305 3.695 14 O -0.340 6.340 15 C 0.395 3.605 16 F -0.144 7.144 17 F -0.141 7.141 18 O -0.222 6.222 19 C 0.036 3.964 20 C -0.134 4.134 21 C -0.084 4.084 22 C -0.198 4.198 23 O -0.357 6.357 24 Si 0.686 3.314 25 C -0.149 4.149 26 C -0.087 4.087 27 C -0.213 4.213 28 C -0.151 4.151 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.237 0.763 39 H -0.202 1.202 40 H -0.232 1.232 41 H 0.176 0.824 42 H 0.184 0.816 43 H 0.157 0.843 44 H 0.110 0.890 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.710 3.318 -3.890 5.786 hybrid contribution -0.826 -0.090 1.926 2.097 sum 1.884 3.228 -1.964 4.222 Atomic orbital electron populations 1.23290 0.78663 1.05112 1.02088 1.88069 1.22150 1.22622 1.93867 1.24344 1.00808 0.86287 0.89904 1.21478 0.74157 0.78702 0.87751 1.93179 1.37206 1.89344 1.96832 1.93190 1.95031 1.71120 1.57685 1.93177 1.68759 1.57048 1.96593 1.23646 0.99504 1.01836 0.91815 1.22083 0.98672 0.95152 0.95325 0.85222 1.23554 0.81880 0.96695 0.98073 1.86459 1.40961 1.34328 1.62228 1.22042 0.87904 0.81361 0.78224 1.90824 1.30672 1.58114 1.54427 1.20384 0.82355 0.79725 0.78022 1.93229 1.64604 1.94414 1.62160 1.93231 1.88635 1.66845 1.65417 1.86587 1.36301 1.32585 1.66720 1.19144 0.86563 0.94123 0.96553 1.20334 1.01089 0.92506 0.99451 1.20250 0.93051 0.96999 0.98055 1.25438 1.13322 0.86160 0.94839 1.86588 1.48540 1.60768 1.39803 0.93919 0.72852 0.82170 0.82505 1.21366 0.96411 0.96749 1.00413 1.21316 0.99618 0.93988 0.93793 1.21789 0.92119 1.02582 1.04798 1.23444 0.90451 1.06157 0.95092 0.87354 0.93337 0.90971 0.85040 0.87447 0.88512 0.89060 0.84982 0.85479 0.76323 1.20242 1.23217 0.82365 0.81553 0.84338 0.89016 0.84984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 10.43 113.37 1.18 1.17 16 2 O -0.35 -0.07 8.34 -148.98 -1.24 -1.31 16 3 C 0.03 -0.07 0.85 -10.18 -0.01 -0.08 16 4 C 0.43 0.50 2.51 71.98 0.18 0.68 16 5 F -0.18 -0.32 15.24 44.97 0.69 0.36 16 6 F -0.19 -1.09 17.09 44.97 0.77 -0.32 16 7 F -0.17 -0.12 15.82 44.97 0.71 0.59 16 8 C -0.13 1.04 6.52 31.12 0.20 1.24 16 9 C -0.09 0.66 4.20 -10.27 -0.04 0.62 16 10 H 0.13 -1.30 8.14 -2.39 -0.02 -1.32 16 11 C 0.07 -0.19 5.06 71.98 0.36 0.17 16 12 O -0.32 -0.31 10.22 -51.37 -0.53 -0.83 16 13 C 0.47 2.37 7.47 71.23 0.53 2.90 16 14 O -0.46 -4.36 16.25 28.39 0.46 -3.90 16 15 C 0.47 2.30 2.16 71.23 0.15 2.45 16 16 F -0.16 -0.67 15.29 44.97 0.69 0.02 16 17 F -0.16 -0.52 15.30 44.97 0.69 0.16 16 18 O -0.30 -2.43 9.60 -73.30 -0.70 -3.13 16 19 C 0.08 0.45 6.48 22.51 0.15 0.59 16 20 C -0.12 -0.50 9.55 22.37 0.21 -0.29 16 21 C -0.08 -0.01 5.39 -19.88 -0.11 -0.11 16 22 C -0.09 0.10 2.82 71.24 0.20 0.31 16 23 O -0.55 -1.45 12.77 -148.98 -1.90 -3.35 16 24 Si 0.78 -3.02 29.78 68.60 2.04 -0.98 16 25 C -0.13 0.42 8.67 22.28 0.19 0.61 16 26 C -0.07 0.18 10.04 22.25 0.22 0.41 16 27 C -0.19 -0.39 8.26 22.36 0.18 -0.20 16 28 C -0.11 0.55 6.92 31.21 0.22 0.77 16 29 H 0.11 -0.50 8.14 -2.38 -0.02 -0.52 16 30 H 0.05 -0.08 6.25 -2.39 -0.01 -0.10 16 31 H 0.07 -0.49 6.76 -2.39 -0.02 -0.51 16 32 H 0.13 -1.38 8.07 -2.38 -0.02 -1.40 16 33 H 0.11 -1.04 6.70 -2.39 -0.02 -1.06 16 34 H 0.10 -0.45 8.13 -2.39 -0.02 -0.47 16 35 H 0.09 -0.02 6.08 -2.39 -0.01 -0.04 16 36 H 0.13 0.70 8.06 -2.91 -0.02 0.68 16 37 H 0.13 -0.32 7.96 -2.39 -0.02 -0.34 16 38 H 0.39 -1.22 8.70 -74.06 -0.64 -1.86 16 39 H -0.28 0.23 7.11 99.48 0.71 0.94 16 40 H -0.30 -1.33 7.11 99.48 0.71 -0.62 16 41 H 0.16 -1.34 4.87 -2.91 -0.01 -1.36 16 42 H 0.17 -1.44 8.06 -2.91 -0.02 -1.46 16 43 H 0.14 0.13 5.10 -2.91 -0.01 0.11 16 44 H 0.09 -0.27 8.10 -2.39 -0.02 -0.29 16 45 H 0.13 -0.97 7.01 -2.39 -0.02 -0.98 16 Total: 0.00 -18.07 393.39 6.01 -12.06 By element: Atomic # 1 Polarization: -11.10 SS G_CDS: 0.50 Total: -10.60 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 3.84 Total: 11.23 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -3.91 Total: -12.53 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 3.54 Total: 0.82 kcal Atomic # 14 Polarization: -3.02 SS G_CDS: 2.04 Total: -0.98 kcal Total: -18.07 6.01 -12.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_17321610.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -346.844 kcal (2) G-P(sol) polarization free energy of solvation -18.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -364.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -358.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds