Wall clock time and date at job start Sat Mar 6 2021 07:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86292 * 109.47298 * 2 1 4 4 C 1.86301 * 109.47166 * 239.99841 * 2 1 3 5 5 C 1.86302 * 109.47244 * 120.00185 * 2 1 3 6 6 O 1.45192 * 109.47268 * 59.99756 * 5 2 1 7 7 C 1.34230 * 117.00018 * 75.00500 * 6 5 2 8 8 O 1.20826 * 120.00015 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00046 * 180.02562 * 7 6 5 10 10 F 1.39905 * 109.47072 * 299.99778 * 9 7 6 11 11 F 1.39900 * 109.47439 * 59.99598 * 9 7 6 12 12 O 1.42900 * 109.47064 * 179.97438 * 9 7 6 13 13 C 1.35901 * 117.00024 * 180.02562 * 12 9 7 14 14 C 1.38708 * 120.05358 * 359.72168 * 13 12 9 15 15 C 1.38168 * 119.94125 * 179.72528 * 14 13 12 16 16 C 1.38247 * 120.05649 * 0.57375 * 15 14 13 17 17 C 1.38287 * 120.11084 * 359.67852 * 16 15 14 18 18 C 1.50693 * 119.97319 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47105 * 245.02356 * 18 17 16 20 20 Si 1.86303 * 109.47358 * 5.02002 * 18 17 16 21 21 H 1.48501 * 109.46716 * 59.99951 * 20 18 17 22 22 H 1.48494 * 109.47615 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47126 * 300.00428 * 20 18 17 24 24 C 1.38123 * 120.05240 * 0.04417 * 17 16 15 25 25 H 1.08999 * 109.47415 * 299.99768 * 1 2 3 26 26 H 1.09001 * 109.47132 * 60.00027 * 1 2 3 27 27 H 1.09003 * 109.47382 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47511 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47007 * 300.00050 * 3 2 1 30 30 H 1.09000 * 109.47605 * 59.99719 * 3 2 1 31 31 H 1.08998 * 109.47150 * 299.99813 * 4 2 1 32 32 H 1.09001 * 109.46987 * 60.00043 * 4 2 1 33 33 H 1.09002 * 109.47152 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.46893 * 299.99608 * 5 2 1 35 35 H 1.09002 * 109.47045 * 180.02562 * 5 2 1 36 36 H 1.08001 * 120.03433 * 0.02562 * 14 13 12 37 37 H 1.08007 * 119.97342 * 180.27490 * 15 14 13 38 38 H 1.08007 * 119.94213 * 179.70351 * 16 15 14 39 39 H 1.08998 * 109.47454 * 125.02439 * 18 17 16 40 40 H 0.96697 * 114.00108 * 179.97438 * 19 18 17 41 41 H 1.07998 * 120.02411 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 2.0000 -2.2472 1.5211 7 6 2.5942 -3.1036 0.6755 8 8 3.4888 -2.7220 -0.0414 9 6 2.1448 -4.5410 0.6193 10 9 2.3162 -5.1326 1.8755 11 9 0.7938 -4.5935 0.2597 12 8 2.9230 -5.2459 -0.3500 13 6 2.6424 -6.5638 -0.5263 14 6 1.6428 -7.1675 0.2222 15 6 1.3557 -8.5063 0.0370 16 6 2.0717 -9.2469 -0.8850 17 6 3.0723 -8.6486 -1.6288 18 6 3.8504 -9.4587 -2.6333 19 8 5.2164 -9.5428 -2.2220 20 14 3.1282 -11.1726 -2.7423 21 1 1.7087 -11.0853 -3.1696 22 1 3.8953 -11.9711 -3.7317 23 1 3.2051 -11.8277 -1.4117 24 6 3.3593 -7.3092 -1.4514 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1206 2.2702 -0.8900 30 1 2.1207 2.2703 0.8899 31 1 2.1207 -1.9059 -1.5211 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8779 -1.5213 34 1 2.1207 -0.3644 2.4111 35 1 3.5740 -0.8779 1.5213 36 1 1.0861 -6.5905 0.9458 37 1 0.5744 -8.9758 0.6164 38 1 1.8489 -10.2944 -1.0248 39 1 3.7940 -8.9779 -3.6099 40 1 5.7775 -10.0515 -2.8231 41 1 4.1411 -6.8426 -2.0322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_5054142_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:52:47 Heat of formation + Delta-G solvation = -241.597990 kcal Electronic energy + Delta-G solvation = -27482.432168 eV Core-core repulsion = 23123.549114 eV Total energy + Delta-G solvation = -4358.883054 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.105 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.80653 -48.80718 -41.91286 -41.26618 -39.24149 -37.91177 -37.37718 -32.71720 -31.87449 -30.14176 -29.48711 -28.56836 -28.47308 -27.50174 -26.93173 -23.86670 -23.54708 -22.18007 -20.44445 -19.72452 -19.62360 -18.59392 -18.53251 -17.87140 -17.54947 -17.39499 -16.51597 -16.23860 -15.90458 -15.61277 -15.49073 -15.28313 -15.04200 -14.90995 -14.72316 -14.61480 -14.47013 -14.21879 -14.11676 -14.10058 -13.91659 -13.59277 -13.44365 -13.40019 -13.18965 -13.15991 -13.05488 -12.80315 -12.58825 -12.25878 -12.07626 -11.89337 -11.76080 -11.03456 -10.90769 -10.68590 -10.46668 -9.98646 -9.58677 0.05587 0.07767 0.22794 0.37650 1.06559 1.27879 1.39325 1.45830 1.56558 1.68376 1.77340 1.86339 2.06889 2.38025 2.48762 2.93398 3.21163 3.30096 3.64034 3.70266 3.90803 3.92975 4.03328 4.12205 4.35880 4.42835 4.47165 4.58247 4.59699 4.66117 4.67000 4.73817 4.75404 4.82647 4.85119 5.00788 5.20439 5.30906 5.34845 5.39009 5.44371 5.58742 5.89480 6.03488 6.51684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.447 4.447 2 Si 0.998 3.002 3 C -0.444 4.444 4 C -0.442 4.442 5 C -0.243 4.243 6 O -0.310 6.310 7 C 0.444 3.556 8 O -0.419 6.419 9 C 0.467 3.533 10 F -0.164 7.164 11 F -0.165 7.165 12 O -0.286 6.286 13 C 0.100 3.900 14 C -0.186 4.186 15 C -0.072 4.072 16 C -0.142 4.142 17 C -0.041 4.041 18 C -0.084 4.084 19 O -0.543 6.543 20 Si 0.950 3.050 21 H -0.248 1.248 22 H -0.255 1.255 23 H -0.246 1.246 24 C -0.096 4.096 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.081 0.919 40 H 0.382 0.618 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 0.532 -0.979 1.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.555 4.555 2 Si 1.193 2.807 3 C -0.552 4.552 4 C -0.550 4.550 5 C -0.360 4.360 6 O -0.225 6.225 7 C 0.279 3.721 8 O -0.302 6.302 9 C 0.392 3.608 10 F -0.146 7.146 11 F -0.146 7.146 12 O -0.204 6.204 13 C 0.058 3.942 14 C -0.204 4.204 15 C -0.090 4.090 16 C -0.160 4.160 17 C -0.041 4.041 18 C -0.194 4.194 19 O -0.349 6.349 20 Si 0.772 3.228 21 H -0.171 1.171 22 H -0.179 1.179 23 H -0.170 1.170 24 C -0.114 4.114 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.146 0.854 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.490 0.296 -0.765 1.701 hybrid contribution 0.256 0.076 -0.026 0.268 sum -1.234 0.372 -0.790 1.512 Atomic orbital electron populations 1.26063 1.19641 1.04945 1.04887 0.79769 0.68044 0.67575 0.65270 1.25998 1.06590 1.17516 1.05117 1.26276 1.07207 1.07185 1.14308 1.28732 1.06057 0.81616 1.19576 1.86442 1.57936 1.21924 1.56203 1.22090 0.82683 0.86663 0.80695 1.90816 1.25915 1.75810 1.37653 1.20490 0.76165 0.87837 0.76330 1.93230 1.94704 1.84944 1.41685 1.93226 1.33570 1.96593 1.91212 1.86608 1.56763 1.21912 1.55092 1.18864 0.96794 0.80836 0.97708 1.21622 0.99358 0.97447 1.02018 1.20896 0.98625 0.92714 0.96732 1.21065 0.97408 1.00138 0.97399 1.19064 0.95529 0.92790 0.96708 1.24783 0.86846 1.09638 0.98167 1.86518 1.17988 1.77632 1.52755 0.85685 0.80491 0.75205 0.81390 1.17133 1.17921 1.16967 1.20220 1.00147 0.92686 0.98360 0.90853 0.90670 0.90941 0.90806 0.90381 0.90860 0.91801 0.91190 0.90190 0.85841 0.89166 0.84549 0.84405 0.85435 0.90110 0.76996 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.65 8.65 101.05 0.87 1.53 16 2 Si 1.00 -2.20 12.12 -169.99 -2.06 -4.26 16 3 C -0.44 1.03 8.65 101.05 0.87 1.90 16 4 C -0.44 -0.15 7.10 101.05 0.72 0.57 16 5 C -0.24 0.32 5.40 101.05 0.55 0.87 16 6 O -0.31 -0.37 9.92 -39.26 -0.39 -0.76 16 7 C 0.44 1.15 6.25 36.01 0.23 1.37 16 8 O -0.42 -1.53 12.17 -25.48 -0.31 -1.84 16 9 C 0.47 1.33 2.16 36.01 0.08 1.41 16 10 F -0.16 -0.46 15.28 2.25 0.03 -0.43 16 11 F -0.16 -0.37 15.31 2.25 0.03 -0.34 16 12 O -0.29 -1.11 9.60 -39.38 -0.38 -1.49 16 13 C 0.10 0.34 6.48 -39.22 -0.25 0.08 16 14 C -0.19 -0.42 8.26 -39.43 -0.33 -0.75 16 15 C -0.07 -0.07 10.04 -39.60 -0.40 -0.47 16 16 C -0.14 -0.16 8.67 -39.56 -0.34 -0.51 16 17 C -0.04 -0.07 5.38 -104.65 -0.56 -0.63 16 18 C -0.08 0.04 2.79 36.00 0.10 0.14 16 19 O -0.54 -0.08 12.81 -35.23 -0.45 -0.54 16 20 Si 0.95 -0.96 25.14 -169.99 -4.27 -5.23 16 21 H -0.25 0.13 7.11 56.52 0.40 0.53 16 22 H -0.26 0.23 7.11 56.52 0.40 0.63 16 23 H -0.25 -0.07 7.04 56.52 0.40 0.33 16 24 C -0.10 -0.26 9.62 -39.43 -0.38 -0.64 16 25 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 26 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 28 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 29 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 30 H 0.07 -0.21 7.96 -51.93 -0.41 -0.62 16 31 H 0.06 0.11 6.28 -51.93 -0.33 -0.22 16 32 H 0.07 -0.02 7.96 -51.93 -0.41 -0.44 16 33 H 0.08 0.09 7.43 -51.93 -0.39 -0.29 16 34 H 0.12 -0.44 7.96 -51.93 -0.41 -0.85 16 35 H 0.09 -0.13 7.52 -51.93 -0.39 -0.52 16 36 H 0.14 0.21 5.10 -52.49 -0.27 -0.06 16 37 H 0.14 -0.22 8.06 -52.48 -0.42 -0.64 16 38 H 0.13 -0.06 4.86 -52.48 -0.26 -0.32 16 39 H 0.08 -0.19 7.96 -51.93 -0.41 -0.60 16 40 H 0.38 -1.67 8.74 45.56 0.40 -1.27 16 41 H 0.14 0.27 8.06 -52.49 -0.42 -0.16 16 LS Contribution 350.77 15.07 5.29 5.29 Total: 0.00 -5.97 350.77 -5.95 -11.92 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: -4.59 Total: -7.21 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 1.15 Total: 4.88 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -1.53 Total: -4.62 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.07 Total: -0.76 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: -6.33 Total: -9.49 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -5.97 -5.95 -11.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -229.675 kcal (2) G-P(sol) polarization free energy of solvation -5.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds