Wall clock time and date at job start Sat Mar 6 2021 07:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86292 * 109.47298 * 2 1 4 4 C 1.86301 * 109.47166 * 239.99841 * 2 1 3 5 5 C 1.86302 * 109.47244 * 120.00185 * 2 1 3 6 6 O 1.45192 * 109.47268 * 59.99756 * 5 2 1 7 7 C 1.34230 * 117.00018 * 75.00500 * 6 5 2 8 8 O 1.20826 * 120.00015 * 359.97438 * 7 6 5 9 9 C 1.50701 * 120.00046 * 180.02562 * 7 6 5 10 10 F 1.39905 * 109.47072 * 299.99778 * 9 7 6 11 11 F 1.39900 * 109.47439 * 59.99598 * 9 7 6 12 12 O 1.42900 * 109.47064 * 179.97438 * 9 7 6 13 13 C 1.35901 * 117.00024 * 180.02562 * 12 9 7 14 14 C 1.38708 * 120.05358 * 359.72168 * 13 12 9 15 15 C 1.38168 * 119.94125 * 179.72528 * 14 13 12 16 16 C 1.38247 * 120.05649 * 0.57375 * 15 14 13 17 17 C 1.38287 * 120.11084 * 359.67852 * 16 15 14 18 18 C 1.50693 * 119.97319 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47105 * 245.02356 * 18 17 16 20 20 Si 1.86303 * 109.47358 * 5.02002 * 18 17 16 21 21 H 1.48501 * 109.46716 * 59.99951 * 20 18 17 22 22 H 1.48494 * 109.47615 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47126 * 300.00428 * 20 18 17 24 24 C 1.38123 * 120.05240 * 0.04417 * 17 16 15 25 25 H 1.08999 * 109.47415 * 299.99768 * 1 2 3 26 26 H 1.09001 * 109.47132 * 60.00027 * 1 2 3 27 27 H 1.09003 * 109.47382 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47511 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47007 * 300.00050 * 3 2 1 30 30 H 1.09000 * 109.47605 * 59.99719 * 3 2 1 31 31 H 1.08998 * 109.47150 * 299.99813 * 4 2 1 32 32 H 1.09001 * 109.46987 * 60.00043 * 4 2 1 33 33 H 1.09002 * 109.47152 * 179.97438 * 4 2 1 34 34 H 1.09005 * 109.46893 * 299.99608 * 5 2 1 35 35 H 1.09002 * 109.47045 * 180.02562 * 5 2 1 36 36 H 1.08001 * 120.03433 * 0.02562 * 14 13 12 37 37 H 1.08007 * 119.97342 * 180.27490 * 15 14 13 38 38 H 1.08007 * 119.94213 * 179.70351 * 16 15 14 39 39 H 1.08998 * 109.47454 * 125.02439 * 18 17 16 40 40 H 0.96697 * 114.00108 * 179.97438 * 19 18 17 41 41 H 1.07998 * 120.02411 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8783 1.5211 6 8 2.0000 -2.2472 1.5211 7 6 2.5942 -3.1036 0.6755 8 8 3.4888 -2.7220 -0.0414 9 6 2.1448 -4.5410 0.6193 10 9 2.3162 -5.1326 1.8755 11 9 0.7938 -4.5935 0.2597 12 8 2.9230 -5.2459 -0.3500 13 6 2.6424 -6.5638 -0.5263 14 6 1.6428 -7.1675 0.2222 15 6 1.3557 -8.5063 0.0370 16 6 2.0717 -9.2469 -0.8850 17 6 3.0723 -8.6486 -1.6288 18 6 3.8504 -9.4587 -2.6333 19 8 5.2164 -9.5428 -2.2220 20 14 3.1282 -11.1726 -2.7423 21 1 1.7087 -11.0853 -3.1696 22 1 3.8953 -11.9711 -3.7317 23 1 3.2051 -11.8277 -1.4117 24 6 3.3593 -7.3092 -1.4514 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.5740 1.7564 -0.0005 29 1 2.1206 2.2702 -0.8900 30 1 2.1207 2.2703 0.8899 31 1 2.1207 -1.9059 -1.5211 32 1 2.1206 -0.3644 -2.4111 33 1 3.5740 -0.8779 -1.5213 34 1 2.1207 -0.3644 2.4111 35 1 3.5740 -0.8779 1.5213 36 1 1.0861 -6.5905 0.9458 37 1 0.5744 -8.9758 0.6164 38 1 1.8489 -10.2944 -1.0248 39 1 3.7940 -8.9779 -3.6099 40 1 5.7775 -10.0515 -2.8231 41 1 4.1411 -6.8426 -2.0322 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_5054142_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 07:52:46 Heat of formation + Delta-G solvation = -234.493740 kcal Electronic energy + Delta-G solvation = -27482.124105 eV Core-core repulsion = 23123.549114 eV Total energy + Delta-G solvation = -4358.574991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 334.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.01569 -49.01578 -42.06755 -41.40619 -39.35691 -38.03476 -37.39029 -32.79130 -32.00679 -30.16498 -29.45716 -28.45974 -28.38795 -27.52107 -26.95040 -23.98707 -23.65997 -22.31821 -20.59621 -19.93420 -19.78558 -18.69855 -18.51293 -17.96217 -17.66624 -17.51055 -16.59834 -16.32327 -16.09986 -15.65142 -15.57516 -15.47608 -15.25029 -14.95198 -14.74625 -14.65597 -14.53630 -14.23074 -14.10581 -14.02547 -13.84803 -13.54031 -13.49123 -13.29136 -13.17961 -13.10674 -13.05506 -12.81169 -12.63737 -12.31243 -12.13046 -11.92943 -11.74735 -10.90882 -10.83733 -10.61628 -10.42682 -10.06529 -9.73178 -0.07021 -0.05881 0.09886 0.20455 1.13408 1.41462 1.46618 1.50238 1.54238 1.76514 1.80974 1.92068 1.95695 2.38700 2.48660 2.85227 3.01610 3.33619 3.53770 3.69230 3.89829 3.94571 4.02556 4.09735 4.31019 4.47964 4.58084 4.64520 4.67775 4.75388 4.78627 4.79250 4.79776 4.82225 4.84225 4.89855 5.09454 5.20559 5.28958 5.49406 5.57251 5.60984 5.77322 5.90368 6.79644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.458 4.458 2 Si 1.058 2.942 3 C -0.446 4.446 4 C -0.464 4.464 5 C -0.263 4.263 6 O -0.310 6.310 7 C 0.445 3.555 8 O -0.436 6.436 9 C 0.466 3.534 10 F -0.165 7.165 11 F -0.163 7.163 12 O -0.299 6.299 13 C 0.080 3.920 14 C -0.197 4.197 15 C -0.071 4.071 16 C -0.149 4.149 17 C -0.049 4.049 18 C -0.090 4.090 19 O -0.563 6.563 20 Si 0.987 3.013 21 H -0.253 1.253 22 H -0.254 1.254 23 H -0.265 1.265 24 C -0.111 4.111 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.151 0.849 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.165 0.835 38 H 0.144 0.856 39 H 0.099 0.901 40 H 0.400 0.600 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.821 0.639 -0.641 2.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.566 4.566 2 Si 1.250 2.750 3 C -0.555 4.555 4 C -0.569 4.569 5 C -0.378 4.378 6 O -0.225 6.225 7 C 0.280 3.720 8 O -0.320 6.320 9 C 0.390 3.610 10 F -0.147 7.147 11 F -0.144 7.144 12 O -0.218 6.218 13 C 0.038 3.962 14 C -0.215 4.215 15 C -0.089 4.089 16 C -0.167 4.167 17 C -0.050 4.050 18 C -0.199 4.199 19 O -0.372 6.372 20 Si 0.810 3.190 21 H -0.177 1.177 22 H -0.178 1.178 23 H -0.190 1.190 24 C -0.129 4.129 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.169 0.831 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.182 0.818 38 H 0.162 0.838 39 H 0.117 0.883 40 H 0.251 0.749 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.973 0.383 -0.455 2.060 hybrid contribution 0.420 0.031 -0.144 0.445 sum -1.553 0.415 -0.599 1.715 Atomic orbital electron populations 1.26189 1.20392 1.04498 1.05499 0.78861 0.66741 0.66777 0.62597 1.26008 1.06655 1.17106 1.05763 1.26605 1.06557 1.06789 1.16975 1.29151 1.06535 0.80419 1.21727 1.86445 1.57746 1.22857 1.55437 1.22085 0.82512 0.86701 0.80667 1.90806 1.26737 1.76062 1.38380 1.20547 0.76212 0.88054 0.76168 1.93218 1.94732 1.85021 1.41694 1.93220 1.33391 1.96609 1.91200 1.86584 1.57244 1.22442 1.55483 1.19135 0.97711 0.80767 0.98594 1.21765 0.99362 0.98207 1.02195 1.21247 0.98868 0.92171 0.96568 1.21355 0.97171 1.00972 0.97167 1.19423 0.95840 0.92624 0.97064 1.24935 0.86559 1.10142 0.98230 1.86468 1.18493 1.78320 1.53962 0.85160 0.79825 0.73948 0.80075 1.17689 1.17801 1.18977 1.20367 1.00494 0.93342 0.98717 0.89830 0.90492 0.91926 0.90795 0.90274 0.89688 0.93597 0.90911 0.91392 0.83083 0.88990 0.84250 0.81788 0.83848 0.88348 0.74882 0.84098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.45 8.65 113.37 0.98 2.43 16 2 Si 1.06 -4.71 12.12 68.60 0.83 -3.88 16 3 C -0.45 2.51 8.65 113.37 0.98 3.49 16 4 C -0.46 -1.08 7.10 113.37 0.81 -0.27 16 5 C -0.26 0.78 5.40 113.37 0.61 1.39 16 6 O -0.31 -0.89 9.92 -51.41 -0.51 -1.40 16 7 C 0.44 2.96 6.25 71.24 0.45 3.41 16 8 O -0.44 -4.01 12.17 28.40 0.35 -3.67 16 9 C 0.47 3.44 2.16 71.24 0.15 3.60 16 10 F -0.17 -1.15 15.28 44.97 0.69 -0.46 16 11 F -0.16 -0.98 15.31 44.97 0.69 -0.29 16 12 O -0.30 -2.99 9.60 -73.36 -0.70 -3.70 16 13 C 0.08 0.68 6.48 22.50 0.15 0.83 16 14 C -0.20 -1.10 8.26 22.37 0.18 -0.91 16 15 C -0.07 -0.14 10.04 22.26 0.22 0.09 16 16 C -0.15 -0.35 8.67 22.28 0.19 -0.16 16 17 C -0.05 -0.20 5.38 -19.88 -0.11 -0.31 16 18 C -0.09 0.08 2.79 71.23 0.20 0.28 16 19 O -0.56 -0.25 12.81 -148.98 -1.91 -2.16 16 20 Si 0.99 -2.52 25.14 68.60 1.72 -0.79 16 21 H -0.25 0.45 7.11 99.48 0.71 1.16 16 22 H -0.25 0.71 7.11 99.48 0.71 1.42 16 23 H -0.27 -0.12 7.04 99.48 0.70 0.58 16 24 C -0.11 -0.77 9.62 22.36 0.22 -0.55 16 25 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 26 H 0.08 -0.26 7.96 -2.39 -0.02 -0.28 16 27 H 0.06 -0.06 7.96 -2.39 -0.02 -0.07 16 28 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.08 -0.42 7.96 -2.39 -0.02 -0.44 16 30 H 0.08 -0.64 7.96 -2.39 -0.02 -0.66 16 31 H 0.04 0.27 6.28 -2.39 -0.01 0.25 16 32 H 0.07 0.06 7.96 -2.39 -0.02 0.04 16 33 H 0.07 0.30 7.43 -2.39 -0.02 0.28 16 34 H 0.15 -1.31 7.96 -2.38 -0.02 -1.33 16 35 H 0.09 -0.26 7.52 -2.39 -0.02 -0.28 16 36 H 0.14 0.58 5.10 -2.91 -0.01 0.57 16 37 H 0.16 -0.68 8.06 -2.91 -0.02 -0.70 16 38 H 0.14 -0.22 4.86 -2.91 -0.01 -0.23 16 39 H 0.10 -0.48 7.96 -2.39 -0.02 -0.50 16 40 H 0.40 -3.59 8.74 -74.06 -0.65 -4.24 16 41 H 0.14 0.83 8.06 -2.91 -0.02 0.81 16 Total: 0.00 -14.86 350.77 7.36 -7.50 By element: Atomic # 1 Polarization: -5.62 SS G_CDS: 1.17 Total: -4.45 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.03 Total: 13.31 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -2.78 Total: -10.93 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 1.38 Total: -0.76 kcal Atomic # 14 Polarization: -7.23 SS G_CDS: 2.56 Total: -4.67 kcal Total: -14.86 7.36 -7.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_5054142_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -226.989 kcal (2) G-P(sol) polarization free energy of solvation -14.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -241.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds