Wall clock time and date at job start Sat Mar 6 2021 10:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86306 * 1 3 3 C 1.86292 * 109.47192 * 2 1 4 4 C 1.86298 * 109.46978 * 239.99662 * 2 1 3 5 5 C 1.86303 * 109.46876 * 119.99937 * 2 1 3 6 6 O 1.45198 * 109.47094 * 59.99760 * 5 2 1 7 7 C 1.34226 * 117.00114 * 75.00052 * 6 5 2 8 8 O 1.20834 * 119.99919 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.00189 * 179.97438 * 7 6 5 10 10 O 1.42900 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.35914 * 116.99871 * 180.02562 * 10 9 7 12 12 C 1.38678 * 120.06015 * 359.97438 * 11 10 9 13 13 C 1.38181 * 119.95680 * 179.97438 * 12 11 10 14 14 C 1.38241 * 120.07059 * 0.03195 * 13 12 11 15 15 C 1.50706 * 119.93825 * 179.97438 * 14 13 12 16 16 O 1.42895 * 109.46938 * 299.99525 * 15 14 13 17 17 Si 1.86299 * 109.46748 * 179.97438 * 15 14 13 18 18 H 1.48503 * 109.47188 * 60.00070 * 17 15 14 19 19 H 1.48506 * 109.47139 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47505 * 299.99883 * 17 15 14 21 21 C 1.38279 * 120.12009 * 0.24319 * 14 13 12 22 22 C 1.38197 * 120.04539 * 359.46139 * 21 14 13 23 23 Br 1.89099 * 120.04178 * 180.25362 * 22 21 14 24 24 H 1.09000 * 109.47019 * 300.00329 * 1 2 3 25 25 H 1.09003 * 109.46909 * 60.00207 * 1 2 3 26 26 H 1.08998 * 109.47448 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47380 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.47025 * 299.99722 * 3 2 1 29 29 H 1.09000 * 109.47407 * 59.99909 * 3 2 1 30 30 H 1.08998 * 109.47200 * 300.00359 * 4 2 1 31 31 H 1.09003 * 109.47194 * 60.00306 * 4 2 1 32 32 H 1.08994 * 109.47233 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47080 * 299.99697 * 5 2 1 34 34 H 1.08994 * 109.46922 * 179.97438 * 5 2 1 35 35 H 1.08994 * 109.46996 * 60.00189 * 9 7 6 36 36 H 1.09001 * 109.46965 * 299.99431 * 9 7 6 37 37 H 1.07999 * 120.02210 * 359.96235 * 12 11 10 38 38 H 1.07999 * 119.96701 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47161 * 59.99791 * 15 14 13 40 40 H 0.96698 * 114.00355 * 299.99977 * 16 15 14 41 41 H 1.07998 * 119.98018 * 179.72434 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4840 -0.8782 1.5212 6 8 1.9999 -2.2472 1.5212 7 6 2.5941 -3.1036 0.6756 8 8 3.4888 -2.7220 -0.0413 9 6 2.1453 -4.5412 0.6202 10 8 2.9234 -5.2461 -0.3492 11 6 2.6434 -6.5644 -0.5249 12 6 1.6412 -7.1671 0.2205 13 6 1.3579 -8.5074 0.0397 14 6 2.0729 -9.2482 -0.8828 15 6 1.7619 -10.7100 -1.0771 16 8 1.9601 -11.4069 0.1545 17 14 2.8904 -11.4170 -2.3799 18 1 4.3027 -11.2647 -1.9471 19 1 2.5844 -12.8576 -2.5710 20 1 2.6840 -10.6927 -3.6598 21 6 3.0767 -8.6518 -1.6236 22 6 3.3600 -7.3102 -1.4512 23 35 4.7278 -6.4929 -2.4695 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.5741 1.7564 -0.0005 28 1 2.1207 2.2702 -0.8900 29 1 2.1207 2.2703 0.8900 30 1 2.1206 -1.9059 -1.5211 31 1 2.1207 -0.3645 -2.4111 32 1 3.5739 -0.8787 -1.5209 33 1 2.1207 -0.3643 2.4112 34 1 3.5739 -0.8786 1.5210 35 1 1.0927 -4.5827 0.3406 36 1 2.2798 -5.0018 1.5990 37 1 1.0826 -6.5893 0.9419 38 1 0.5772 -8.9768 0.6198 39 1 0.7254 -10.8218 -1.3952 40 1 2.8623 -11.3503 0.4977 41 1 3.6368 -9.2337 -2.3405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_6201216_4858416.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 10:52:47 Heat of formation + Delta-G solvation = -147.804255 kcal Electronic energy + Delta-G solvation = -23901.644065 eV Core-core repulsion = 20145.918160 eV Total energy + Delta-G solvation = -3755.725905 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 376.035 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.93899 -41.20432 -39.40813 -37.55431 -37.18592 -33.55260 -32.32139 -30.97985 -30.08244 -29.62942 -28.52755 -28.37522 -27.68647 -26.41349 -24.21166 -22.62526 -21.96282 -19.78186 -18.79064 -18.20107 -18.13507 -18.00369 -16.93529 -16.76501 -16.65321 -16.25147 -15.78818 -15.14139 -15.01475 -14.66896 -14.56498 -14.29036 -14.26540 -13.99075 -13.94433 -13.81881 -13.54407 -13.44640 -13.31002 -13.09129 -13.03805 -12.64286 -12.52984 -12.35235 -12.31150 -12.18054 -11.84951 -11.73309 -11.47047 -11.11156 -10.96207 -10.80290 -10.54142 -10.48681 -10.06254 -9.37866 -0.11263 -0.01804 0.64071 0.89004 1.03379 1.06658 1.37487 1.44399 1.44673 1.74458 1.78924 1.85887 2.30166 2.33357 2.47630 3.34060 3.40145 3.42484 3.63681 3.70786 3.70856 3.82279 3.95092 4.10952 4.22805 4.37334 4.52666 4.56501 4.62542 4.64526 4.67670 4.68538 4.70303 4.87077 4.91377 4.93520 5.19105 5.23410 5.32108 5.38667 5.45769 5.72602 5.88856 6.44421 6.65638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.446 4.446 2 Si 0.999 3.001 3 C -0.446 4.446 4 C -0.437 4.437 5 C -0.237 4.237 6 O -0.333 6.333 7 C 0.445 3.555 8 O -0.461 6.461 9 C 0.065 3.935 10 O -0.279 6.279 11 C 0.161 3.839 12 C -0.203 4.203 13 C -0.032 4.032 14 C -0.150 4.150 15 C -0.073 4.073 16 O -0.537 6.537 17 Si 0.935 3.065 18 H -0.247 1.247 19 H -0.249 1.249 20 H -0.246 1.246 21 C -0.058 4.058 22 C -0.117 4.117 23 Br -0.025 7.025 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.122 0.878 40 H 0.378 0.622 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.214 0.090 2.559 4.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.554 4.554 2 Si 1.195 2.805 3 C -0.555 4.555 4 C -0.545 4.545 5 C -0.355 4.355 6 O -0.249 6.249 7 C 0.285 3.715 8 O -0.346 6.346 9 C -0.012 4.012 10 O -0.191 6.191 11 C 0.114 3.886 12 C -0.222 4.222 13 C -0.050 4.050 14 C -0.152 4.152 15 C -0.184 4.184 16 O -0.342 6.342 17 Si 0.757 3.243 18 H -0.171 1.171 19 H -0.173 1.173 20 H -0.170 1.170 21 C -0.078 4.078 22 C -0.197 4.197 23 Br 0.061 6.939 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.160 0.840 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.225 0.775 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.327 0.184 1.192 2.621 hybrid contribution -0.023 0.312 0.859 0.914 sum -2.350 0.496 2.050 3.158 Atomic orbital electron populations 1.26061 1.19965 1.04657 1.04678 0.79715 0.67681 0.67247 0.65872 1.26039 1.06553 1.17989 1.04893 1.26250 1.07154 1.07224 1.13884 1.28427 1.05508 0.83144 1.18443 1.86357 1.59101 1.21463 1.58015 1.22772 0.81621 0.88242 0.78817 1.90757 1.27512 1.77457 1.38873 1.21951 0.96811 0.87818 0.94574 1.86198 1.57469 1.18861 1.56585 1.18549 0.93497 0.82764 0.93835 1.21341 1.00401 0.96959 1.03528 1.20958 0.97126 0.92166 0.94762 1.20257 0.98059 0.97325 0.99520 1.24863 1.09263 0.89109 0.95127 1.86520 1.35268 1.74008 1.38447 0.85874 0.79032 0.81148 0.78228 1.17075 1.17265 1.16991 1.20891 0.96322 0.92283 0.98263 1.20966 1.01452 0.94924 1.02388 1.96815 1.46460 1.81376 1.69251 0.91024 0.90890 0.91132 0.90927 0.90589 0.91024 0.91578 0.91798 0.90365 0.86883 0.89883 0.87206 0.87213 0.83992 0.84104 0.86035 0.77502 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.67 8.65 101.05 0.87 1.55 16 2 Si 1.00 -1.86 12.12 -169.99 -2.06 -3.92 16 3 C -0.45 0.71 8.65 101.05 0.87 1.58 16 4 C -0.44 -0.44 7.10 101.05 0.72 0.27 16 5 C -0.24 0.26 5.40 101.05 0.55 0.80 16 6 O -0.33 -0.01 9.92 -39.25 -0.39 -0.40 16 7 C 0.45 0.45 6.82 36.01 0.25 0.69 16 8 O -0.46 -1.78 12.17 -25.48 -0.31 -2.09 16 9 C 0.06 -0.09 5.33 36.01 0.19 0.10 16 10 O -0.28 -0.49 9.01 -39.42 -0.36 -0.84 16 11 C 0.16 0.17 6.68 -39.20 -0.26 -0.09 16 12 C -0.20 0.28 9.04 -39.44 -0.36 -0.08 16 13 C -0.03 0.04 9.60 -39.60 -0.38 -0.34 16 14 C -0.15 0.11 5.39 -104.60 -0.56 -0.45 16 15 C -0.07 0.12 2.82 36.01 0.10 0.22 16 16 O -0.54 0.56 12.77 -35.23 -0.45 0.11 16 17 Si 0.93 -0.99 25.07 -169.99 -4.26 -5.25 16 18 H -0.25 0.18 7.11 56.52 0.40 0.58 16 19 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 20 H -0.25 0.09 7.11 56.52 0.40 0.49 16 21 C -0.06 -0.03 8.40 -39.58 -0.33 -0.36 16 22 C -0.12 -0.23 6.24 -39.37 -0.25 -0.47 16 23 Br -0.02 -0.08 33.16 -68.01 -2.26 -2.33 16 24 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 25 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 27 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 28 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 30 H 0.07 0.14 6.28 -51.93 -0.33 -0.18 16 31 H 0.06 0.03 7.96 -51.93 -0.41 -0.38 16 32 H 0.08 0.19 7.43 -51.93 -0.39 -0.20 16 33 H 0.11 -0.34 7.96 -51.93 -0.41 -0.76 16 34 H 0.08 -0.04 7.52 -51.93 -0.39 -0.43 16 35 H 0.11 -0.45 7.66 -51.93 -0.40 -0.85 16 36 H 0.11 -0.42 7.66 -51.93 -0.40 -0.82 16 37 H 0.14 -0.58 6.30 -52.49 -0.33 -0.92 16 38 H 0.14 -0.40 8.06 -52.49 -0.42 -0.82 16 39 H 0.12 -0.32 7.96 -51.93 -0.41 -0.73 16 40 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 41 H 0.14 -0.03 4.87 -52.49 -0.26 -0.28 16 LS Contribution 361.80 15.07 5.45 5.45 Total: 0.00 -6.88 361.80 -8.25 -15.13 By element: Atomic # 1 Polarization: -4.25 SS G_CDS: -5.03 Total: -9.28 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 1.41 Total: 3.42 kcal Atomic # 8 Polarization: -1.72 SS G_CDS: -1.50 Total: -3.22 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: -6.32 Total: -9.17 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.33 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -6.88 -8.25 -15.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6201216_4858416.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.679 kcal (2) G-P(sol) polarization free energy of solvation -6.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds