Wall clock time and date at job start Sat Mar 6 2021 08:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 109.46865 * 2 1 4 4 C 1.86296 * 109.47243 * 239.99604 * 2 1 3 5 5 C 1.86807 * 109.46908 * 119.99796 * 2 1 3 6 6 C 1.38233 * 119.99875 * 90.00184 * 5 2 1 7 7 C 1.38237 * 119.99651 * 180.02562 * 6 5 2 8 8 C 1.38229 * 120.00189 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00313 * 179.97438 * 8 7 6 10 10 O 1.45196 * 109.47396 * 89.99381 * 9 8 7 11 11 C 1.34234 * 116.99938 * 180.02562 * 10 9 8 12 12 O 1.20826 * 119.99712 * 359.72483 * 11 10 9 13 13 C 1.50700 * 120.00068 * 180.02562 * 11 10 9 14 14 O 1.42898 * 109.46900 * 179.97438 * 13 11 10 15 15 C 1.35914 * 116.99629 * 180.02562 * 14 13 11 16 16 C 1.38679 * 120.06216 * 359.72346 * 15 14 13 17 17 C 1.38187 * 119.95570 * 179.72155 * 16 15 14 18 18 C 1.38235 * 120.06970 * 0.53368 * 17 16 15 19 19 C 1.50709 * 119.93992 * 179.74145 * 18 17 16 20 20 O 1.42902 * 109.46813 * 120.02477 * 19 18 17 21 21 Si 1.86298 * 109.47054 * 0.02562 * 19 18 17 22 22 H 1.48497 * 109.47129 * 59.99870 * 21 19 18 23 23 H 1.48503 * 109.47193 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47066 * 299.99628 * 21 19 18 25 25 C 1.38291 * 120.12256 * 359.76866 * 18 17 16 26 26 C 1.38193 * 120.04075 * 359.95070 * 25 18 17 27 27 Br 1.89098 * 120.03461 * 180.02562 * 26 25 18 28 28 C 1.38240 * 120.00082 * 0.25104 * 8 7 6 29 29 C 1.38234 * 119.99784 * 359.49714 * 28 8 7 30 30 H 1.08996 * 109.47396 * 300.00041 * 1 2 3 31 31 H 1.08995 * 109.47314 * 60.00163 * 1 2 3 32 32 H 1.09002 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46910 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47277 * 299.99535 * 3 2 1 35 35 H 1.09004 * 109.47455 * 59.99806 * 3 2 1 36 36 H 1.08997 * 109.47551 * 300.00194 * 4 2 1 37 37 H 1.08996 * 109.47039 * 60.00379 * 4 2 1 38 38 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 39 39 H 1.07997 * 120.00018 * 0.02562 * 6 5 2 40 40 H 1.08003 * 119.99717 * 179.97438 * 7 6 5 41 41 H 1.09012 * 109.46606 * 329.99364 * 9 8 7 42 42 H 1.08996 * 109.47079 * 209.99942 * 9 8 7 43 43 H 1.08992 * 109.47012 * 300.00044 * 13 11 10 44 44 H 1.08999 * 109.46550 * 59.99877 * 13 11 10 45 45 H 1.08006 * 120.02181 * 0.02562 * 16 15 14 46 46 H 1.07998 * 119.96184 * 180.27293 * 17 16 15 47 47 H 1.09001 * 109.46918 * 240.02097 * 19 18 17 48 48 H 0.96700 * 113.99932 * 299.99308 * 20 19 18 49 49 H 1.07996 * 119.98115 * 179.97438 * 25 18 17 50 50 H 1.08001 * 120.00133 * 179.72520 * 28 8 7 51 51 H 1.07995 * 120.00144 * 180.22961 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1840 3.7832 9 6 3.9067 -2.8945 5.0141 10 8 5.3587 -2.8947 5.0154 11 6 5.9671 -3.4933 6.0515 12 8 5.3081 -3.9959 6.9307 13 6 7.4719 -3.5324 6.1215 14 8 7.8758 -4.2178 7.3086 15 6 9.2119 -4.3413 7.5254 16 6 10.1151 -3.8189 6.6119 17 6 11.4730 -3.9406 6.8374 18 6 11.9319 -4.5921 7.9669 19 6 13.4135 -4.7283 8.2070 20 8 13.7565 -4.0928 9.4401 21 14 14.3456 -3.9198 6.8113 22 1 13.9853 -2.4808 6.7435 23 1 15.8055 -4.0545 7.0475 24 1 13.9891 -4.5803 5.5299 25 6 11.0339 -5.1197 8.8768 26 6 9.6749 -4.9957 8.6590 27 35 8.4472 -5.7165 9.9035 28 6 3.1697 -0.8224 3.8191 29 6 2.7144 -0.1698 2.6887 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2702 -0.8900 35 1 2.1205 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3645 -2.4110 38 1 3.5740 -0.8779 -1.5212 39 1 2.5364 -2.7985 0.5824 40 1 3.3559 -3.9595 2.5934 41 1 3.5432 -3.9223 5.0137 42 1 3.5426 -2.3808 5.9037 43 1 7.8627 -4.0554 5.2488 44 1 7.8613 -2.5145 6.1397 45 1 9.7574 -3.3129 5.7272 46 1 12.1765 -3.5300 6.1283 47 1 13.6779 -5.7846 8.2568 48 1 13.5487 -3.1487 9.4672 49 1 11.3949 -5.6286 9.7582 50 1 3.3446 -0.2678 4.7292 51 1 2.5337 0.8946 2.7156 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_6201216_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:41:15 Heat of formation + Delta-G solvation = -136.255965 kcal Electronic energy + Delta-G solvation = -31776.683914 eV Core-core repulsion = 27197.478981 eV Total energy + Delta-G solvation = -4579.204933 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 452.066 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.96853 -41.28819 -40.07895 -39.36949 -37.61568 -37.22194 -33.68985 -33.20238 -32.06045 -31.97307 -30.73539 -30.06194 -29.61215 -28.50478 -28.46730 -27.32841 -26.40787 -24.26232 -23.57031 -22.70684 -22.25602 -21.97933 -19.86830 -18.69624 -18.52646 -18.14402 -18.11174 -17.44144 -16.96224 -16.92445 -16.42667 -16.20169 -15.98039 -15.87990 -15.84678 -15.25775 -14.74478 -14.62585 -14.49427 -14.37397 -14.33367 -14.23656 -14.10957 -13.92525 -13.85515 -13.77547 -13.71138 -13.45972 -13.32478 -13.31963 -13.15858 -12.77262 -12.46766 -12.40264 -12.38280 -12.17801 -12.15060 -11.85389 -11.79562 -11.73654 -11.57307 -11.10098 -11.09696 -10.96706 -10.91170 -10.53340 -10.01169 -9.86831 -9.77917 -9.39569 -0.14406 -0.00762 0.01834 0.45968 0.66426 0.98138 1.00925 1.06371 1.33127 1.39911 1.63169 1.78560 1.82150 1.87393 2.25873 2.29495 2.47850 2.86209 3.31570 3.33407 3.47886 3.54027 3.59139 3.66703 3.73984 3.74515 3.75194 3.97298 4.03290 4.15734 4.24500 4.29109 4.42316 4.46417 4.52779 4.59838 4.64646 4.65689 4.69717 4.70043 4.70544 4.71445 4.72054 4.86106 4.90752 5.06645 5.11702 5.18207 5.33491 5.35335 5.40067 5.43573 5.48772 5.52773 5.54438 5.87204 6.01969 6.45890 6.57735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.060 2.940 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.359 4.359 6 C -0.091 4.091 7 C -0.105 4.105 8 C -0.093 4.093 9 C 0.111 3.889 10 O -0.348 6.348 11 C 0.463 3.537 12 O -0.476 6.476 13 C 0.066 3.934 14 O -0.279 6.279 15 C 0.160 3.840 16 C -0.198 4.198 17 C -0.068 4.068 18 C -0.150 4.150 19 C -0.076 4.076 20 O -0.537 6.537 21 Si 0.947 3.053 22 H -0.250 1.250 23 H -0.251 1.251 24 H -0.249 1.249 25 C -0.021 4.021 26 C -0.121 4.121 27 Br -0.024 7.024 28 C -0.105 4.105 29 C -0.091 4.091 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.143 0.857 46 H 0.131 0.869 47 H 0.121 0.879 48 H 0.377 0.623 49 H 0.148 0.852 50 H 0.122 0.878 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 3.369 -5.671 6.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.558 4.558 4 C -0.558 4.558 5 C -0.401 4.401 6 C -0.109 4.109 7 C -0.123 4.123 8 C -0.093 4.093 9 C 0.039 3.961 10 O -0.265 6.265 11 C 0.304 3.696 12 O -0.360 6.360 13 C -0.011 4.011 14 O -0.192 6.192 15 C 0.112 3.888 16 C -0.217 4.217 17 C -0.086 4.086 18 C -0.152 4.152 19 C -0.187 4.187 20 O -0.342 6.342 21 Si 0.770 3.230 22 H -0.174 1.174 23 H -0.174 1.174 24 H -0.173 1.173 25 C -0.041 4.041 26 C -0.201 4.201 27 Br 0.062 6.938 28 C -0.123 4.123 29 C -0.109 4.109 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.160 0.840 46 H 0.149 0.851 47 H 0.139 0.861 48 H 0.225 0.775 49 H 0.165 0.835 50 H 0.140 0.860 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.974 2.630 -5.284 5.982 hybrid contribution -0.247 0.418 -0.036 0.487 sum 0.727 3.047 -5.320 6.174 Atomic orbital electron populations 1.26125 1.20387 1.04627 1.04556 0.78193 0.66906 0.66141 0.63639 1.26136 1.06478 1.18517 1.04624 1.26134 1.06479 1.08068 1.15074 1.27515 1.02742 0.99537 1.10277 1.21092 0.97434 0.94667 0.97746 1.21167 0.98674 0.99923 0.92513 1.19455 1.01302 0.94241 0.94300 1.21936 0.75589 1.01625 0.96988 1.86502 1.23755 1.71080 1.45197 1.22765 0.90653 0.76099 0.80128 1.90775 1.66340 1.41246 1.37675 1.21953 0.89788 1.00281 0.89032 1.86205 1.19787 1.72372 1.40836 1.18555 0.82280 0.94578 0.93339 1.21180 0.93380 1.06238 1.00951 1.20973 0.95287 0.96091 0.96288 1.20279 0.96699 1.02102 0.96088 1.24948 0.93323 1.03938 0.96499 1.86536 1.85509 1.27179 1.34977 0.85720 0.80312 0.80219 0.76780 1.17368 1.17442 1.17314 1.20888 0.89119 0.95380 0.98727 1.21169 0.94427 1.07948 0.96566 1.96818 1.58440 1.83382 1.55195 1.21169 0.98689 0.93488 0.98935 1.21092 0.97460 0.99825 0.92563 0.91146 0.90969 0.91143 0.91033 0.90892 0.91151 0.91146 0.90896 0.91033 0.85777 0.86021 0.89832 0.89827 0.87096 0.87094 0.83981 0.85116 0.86106 0.77545 0.83470 0.86020 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.89 8.65 101.05 0.87 1.76 16 2 Si 1.06 -3.27 12.32 -169.99 -2.09 -5.36 16 3 C -0.45 1.06 8.53 101.05 0.86 1.92 16 4 C -0.45 1.06 8.53 101.05 0.86 1.92 16 5 C -0.36 0.30 4.59 -39.58 -0.18 0.12 16 6 C -0.09 0.03 9.29 -39.58 -0.37 -0.33 16 7 C -0.10 -0.04 9.70 -39.58 -0.38 -0.42 16 8 C -0.09 -0.07 5.52 -104.62 -0.58 -0.65 16 9 C 0.11 0.08 5.59 36.01 0.20 0.28 16 10 O -0.35 -0.38 10.20 -39.27 -0.40 -0.78 16 11 C 0.46 0.81 8.03 36.01 0.29 1.10 16 12 O -0.48 -2.60 16.25 -25.48 -0.41 -3.01 16 13 C 0.07 -0.07 5.33 36.01 0.19 0.12 16 14 O -0.28 -0.59 9.01 -39.42 -0.36 -0.95 16 15 C 0.16 0.20 6.68 -39.20 -0.26 -0.06 16 16 C -0.20 0.23 9.04 -39.44 -0.36 -0.13 16 17 C -0.07 0.09 8.66 -39.60 -0.34 -0.26 16 18 C -0.15 0.10 5.39 -104.60 -0.56 -0.46 16 19 C -0.08 0.12 2.82 36.01 0.10 0.22 16 20 O -0.54 0.37 12.77 -35.23 -0.45 -0.08 16 21 Si 0.95 -1.78 25.07 -169.99 -4.26 -6.04 16 22 H -0.25 0.47 7.11 56.52 0.40 0.87 16 23 H -0.25 0.04 7.11 56.52 0.40 0.44 16 24 H -0.25 0.38 7.11 56.52 0.40 0.78 16 25 C -0.02 -0.01 9.35 -39.58 -0.37 -0.38 16 26 C -0.12 -0.24 6.24 -39.38 -0.25 -0.49 16 27 Br -0.02 -0.08 33.16 -68.01 -2.26 -2.33 16 28 C -0.10 -0.04 9.70 -39.58 -0.38 -0.42 16 29 C -0.09 0.03 9.29 -39.58 -0.37 -0.33 16 30 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 31 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 32 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 35 H 0.07 -0.18 7.69 -51.93 -0.40 -0.58 16 36 H 0.07 -0.18 7.69 -51.93 -0.40 -0.57 16 37 H 0.07 -0.18 7.96 -51.93 -0.41 -0.59 16 38 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 39 H 0.12 -0.28 7.43 -52.49 -0.39 -0.67 16 40 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 41 H 0.08 0.03 8.08 -51.92 -0.42 -0.39 16 42 H 0.08 0.03 8.07 -51.93 -0.42 -0.38 16 43 H 0.11 -0.41 7.65 -51.93 -0.40 -0.81 16 44 H 0.11 -0.41 7.67 -51.93 -0.40 -0.81 16 45 H 0.14 -0.57 6.30 -52.48 -0.33 -0.90 16 46 H 0.13 -0.39 4.87 -52.49 -0.26 -0.64 16 47 H 0.12 -0.28 7.96 -51.93 -0.41 -0.70 16 48 H 0.38 -1.44 8.70 45.56 0.40 -1.05 16 49 H 0.15 -0.01 8.06 -52.49 -0.42 -0.43 16 50 H 0.12 -0.12 8.06 -52.49 -0.42 -0.54 16 51 H 0.12 -0.28 7.43 -52.49 -0.39 -0.67 16 LS Contribution 450.49 15.07 6.79 6.79 Total: 0.00 -8.55 450.49 -11.24 -19.79 By element: Atomic # 1 Polarization: -4.76 SS G_CDS: -6.77 Total: -11.53 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.02 Total: 3.52 kcal Atomic # 8 Polarization: -3.20 SS G_CDS: -1.62 Total: -4.82 kcal Atomic # 14 Polarization: -5.05 SS G_CDS: -6.36 Total: -11.40 kcal Atomic # 35 Polarization: -0.08 SS G_CDS: -2.26 Total: -2.33 kcal Total LS contribution 6.79 Total: 6.79 kcal Total: -8.55 -11.24 -19.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6201216_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.466 kcal (2) G-P(sol) polarization free energy of solvation -8.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds