Wall clock time and date at job start Sat Mar 6 2021 08:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86296 * 109.46865 * 2 1 4 4 C 1.86296 * 109.47243 * 239.99604 * 2 1 3 5 5 C 1.86807 * 109.46908 * 119.99796 * 2 1 3 6 6 C 1.38233 * 119.99875 * 90.00184 * 5 2 1 7 7 C 1.38237 * 119.99651 * 180.02562 * 6 5 2 8 8 C 1.38229 * 120.00189 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00313 * 179.97438 * 8 7 6 10 10 O 1.45196 * 109.47396 * 89.99381 * 9 8 7 11 11 C 1.34234 * 116.99938 * 180.02562 * 10 9 8 12 12 O 1.20826 * 119.99712 * 359.72483 * 11 10 9 13 13 C 1.50700 * 120.00068 * 180.02562 * 11 10 9 14 14 O 1.42898 * 109.46900 * 179.97438 * 13 11 10 15 15 C 1.35914 * 116.99629 * 180.02562 * 14 13 11 16 16 C 1.38679 * 120.06216 * 359.72346 * 15 14 13 17 17 C 1.38187 * 119.95570 * 179.72155 * 16 15 14 18 18 C 1.38235 * 120.06970 * 0.53368 * 17 16 15 19 19 C 1.50709 * 119.93992 * 179.74145 * 18 17 16 20 20 O 1.42902 * 109.46813 * 120.02477 * 19 18 17 21 21 Si 1.86298 * 109.47054 * 0.02562 * 19 18 17 22 22 H 1.48497 * 109.47129 * 59.99870 * 21 19 18 23 23 H 1.48503 * 109.47193 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47066 * 299.99628 * 21 19 18 25 25 C 1.38291 * 120.12256 * 359.76866 * 18 17 16 26 26 C 1.38193 * 120.04075 * 359.95070 * 25 18 17 27 27 Br 1.89098 * 120.03461 * 180.02562 * 26 25 18 28 28 C 1.38240 * 120.00082 * 0.25104 * 8 7 6 29 29 C 1.38234 * 119.99784 * 359.49714 * 28 8 7 30 30 H 1.08996 * 109.47396 * 300.00041 * 1 2 3 31 31 H 1.08995 * 109.47314 * 60.00163 * 1 2 3 32 32 H 1.09002 * 109.47405 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46910 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47277 * 299.99535 * 3 2 1 35 35 H 1.09004 * 109.47455 * 59.99806 * 3 2 1 36 36 H 1.08997 * 109.47551 * 300.00194 * 4 2 1 37 37 H 1.08996 * 109.47039 * 60.00379 * 4 2 1 38 38 H 1.09002 * 109.46935 * 179.97438 * 4 2 1 39 39 H 1.07997 * 120.00018 * 0.02562 * 6 5 2 40 40 H 1.08003 * 119.99717 * 179.97438 * 7 6 5 41 41 H 1.09012 * 109.46606 * 329.99364 * 9 8 7 42 42 H 1.08996 * 109.47079 * 209.99942 * 9 8 7 43 43 H 1.08992 * 109.47012 * 300.00044 * 13 11 10 44 44 H 1.08999 * 109.46550 * 59.99877 * 13 11 10 45 45 H 1.08006 * 120.02181 * 0.02562 * 16 15 14 46 46 H 1.07998 * 119.96184 * 180.27293 * 17 16 15 47 47 H 1.09001 * 109.46918 * 240.02097 * 19 18 17 48 48 H 0.96700 * 113.99932 * 299.99308 * 20 19 18 49 49 H 1.07996 * 119.98115 * 179.97438 * 25 18 17 50 50 H 1.08001 * 120.00133 * 179.72520 * 28 8 7 51 51 H 1.07995 * 120.00144 * 180.22961 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5210 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1762 -2.8948 2.6200 8 6 3.4055 -2.1840 3.7832 9 6 3.9067 -2.8945 5.0141 10 8 5.3587 -2.8947 5.0154 11 6 5.9671 -3.4933 6.0515 12 8 5.3081 -3.9959 6.9307 13 6 7.4719 -3.5324 6.1215 14 8 7.8758 -4.2178 7.3086 15 6 9.2119 -4.3413 7.5254 16 6 10.1151 -3.8189 6.6119 17 6 11.4730 -3.9406 6.8374 18 6 11.9319 -4.5921 7.9669 19 6 13.4135 -4.7283 8.2070 20 8 13.7565 -4.0928 9.4401 21 14 14.3456 -3.9198 6.8113 22 1 13.9853 -2.4808 6.7435 23 1 15.8055 -4.0545 7.0475 24 1 13.9891 -4.5803 5.5299 25 6 11.0339 -5.1197 8.8768 26 6 9.6749 -4.9957 8.6590 27 35 8.4472 -5.7165 9.9035 28 6 3.1697 -0.8224 3.8191 29 6 2.7144 -0.1698 2.6887 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.5740 1.7565 0.0005 34 1 2.1206 2.2702 -0.8900 35 1 2.1205 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5211 37 1 2.1207 -0.3645 -2.4110 38 1 3.5740 -0.8779 -1.5212 39 1 2.5364 -2.7985 0.5824 40 1 3.3559 -3.9595 2.5934 41 1 3.5432 -3.9223 5.0137 42 1 3.5426 -2.3808 5.9037 43 1 7.8627 -4.0554 5.2488 44 1 7.8613 -2.5145 6.1397 45 1 9.7574 -3.3129 5.7272 46 1 12.1765 -3.5300 6.1283 47 1 13.6779 -5.7846 8.2568 48 1 13.5487 -3.1487 9.4672 49 1 11.3949 -5.6286 9.7582 50 1 3.3446 -0.2678 4.7292 51 1 2.5337 0.8946 2.7156 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6201216_9435856.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:41:14 Heat of formation + Delta-G solvation = -127.587460 kcal Electronic energy + Delta-G solvation = -31776.308020 eV Core-core repulsion = 27197.478981 eV Total energy + Delta-G solvation = -4578.829038 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 452.066 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.02245 -41.31146 -40.04041 -39.33098 -37.70718 -37.19943 -33.69650 -33.18882 -31.99602 -31.90708 -30.74725 -30.05612 -29.41312 -28.28381 -28.26636 -27.31261 -26.32238 -24.22888 -23.51004 -22.69652 -22.20636 -22.00429 -19.83504 -18.71161 -18.55415 -18.17819 -18.07593 -17.39762 -16.92415 -16.90584 -16.34962 -16.10459 -15.90611 -15.87773 -15.78899 -15.13269 -14.73460 -14.61459 -14.45896 -14.30835 -14.23873 -14.04790 -13.96516 -13.84757 -13.74127 -13.72176 -13.69715 -13.38678 -13.15443 -13.10272 -12.95716 -12.71213 -12.42101 -12.32748 -12.23879 -12.13863 -12.05422 -11.91349 -11.79085 -11.78027 -11.61876 -11.25006 -10.92164 -10.79352 -10.74966 -10.41631 -10.00389 -9.82823 -9.72290 -9.38567 -0.11353 0.02706 0.07282 0.50067 0.59312 0.90847 1.00748 1.21168 1.50483 1.54501 1.83412 1.96832 2.03313 2.06939 2.30703 2.34964 2.66831 2.91248 3.34013 3.47459 3.58642 3.67735 3.69919 3.72762 3.75259 3.90970 3.93124 4.06016 4.09757 4.18979 4.25215 4.31106 4.52009 4.59307 4.63584 4.68768 4.80587 4.85003 4.85362 4.89529 4.90574 4.90921 4.91352 4.94054 4.96164 5.11290 5.14071 5.18441 5.38175 5.42701 5.54218 5.57134 5.60191 5.68638 5.71874 5.93785 6.09235 6.48201 6.72709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.128 2.872 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.371 4.371 6 C -0.102 4.102 7 C -0.119 4.119 8 C -0.106 4.106 9 C 0.111 3.889 10 O -0.344 6.344 11 C 0.465 3.535 12 O -0.522 6.522 13 C 0.063 3.937 14 O -0.307 6.307 15 C 0.148 3.852 16 C -0.189 4.189 17 C -0.068 4.068 18 C -0.148 4.148 19 C -0.079 4.079 20 O -0.554 6.554 21 Si 0.982 3.018 22 H -0.244 1.244 23 H -0.279 1.279 24 H -0.249 1.249 25 C -0.030 4.030 26 C -0.140 4.140 27 Br -0.050 7.050 28 C -0.119 4.119 29 C -0.102 4.102 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.176 0.824 46 H 0.153 0.847 47 H 0.124 0.876 48 H 0.390 0.610 49 H 0.145 0.855 50 H 0.129 0.871 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 4.628 -7.767 9.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.315 2.685 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.410 4.410 6 C -0.120 4.120 7 C -0.137 4.137 8 C -0.106 4.106 9 C 0.038 3.962 10 O -0.261 6.261 11 C 0.308 3.692 12 O -0.410 6.410 13 C -0.012 4.012 14 O -0.220 6.220 15 C 0.101 3.899 16 C -0.208 4.208 17 C -0.086 4.086 18 C -0.150 4.150 19 C -0.189 4.189 20 O -0.361 6.361 21 Si 0.805 3.195 22 H -0.167 1.167 23 H -0.205 1.205 24 H -0.172 1.172 25 C -0.049 4.049 26 C -0.220 4.220 27 Br 0.035 6.965 28 C -0.137 4.137 29 C -0.120 4.120 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.159 0.841 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.160 0.840 44 H 0.161 0.839 45 H 0.193 0.807 46 H 0.170 0.830 47 H 0.142 0.858 48 H 0.239 0.761 49 H 0.163 0.837 50 H 0.147 0.853 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.787 3.901 -7.383 8.540 hybrid contribution -0.477 0.051 0.583 0.755 sum 1.310 3.952 -6.800 7.973 Atomic orbital electron populations 1.26311 1.21780 1.04439 1.04558 0.77164 0.65044 0.64696 0.61629 1.26276 1.06495 1.19292 1.04882 1.26274 1.06496 1.08479 1.15698 1.28080 1.02041 0.99634 1.11212 1.21401 0.97200 0.95177 0.98181 1.21379 0.99019 1.00491 0.92773 1.19532 1.02051 0.94623 0.94398 1.21949 0.75553 1.01561 0.97167 1.86511 1.23946 1.70748 1.44924 1.23426 0.91861 0.74709 0.79234 1.90757 1.67542 1.43378 1.39313 1.22289 0.87508 1.02275 0.89160 1.86159 1.20420 1.73089 1.42337 1.18695 0.82382 0.95157 0.93682 1.21525 0.92953 1.05175 1.01168 1.21262 0.95749 0.95371 0.96173 1.20415 0.96871 1.01668 0.96019 1.25086 0.92804 1.04439 0.96585 1.86506 1.85615 1.28421 1.35581 0.85235 0.78005 0.80216 0.76017 1.16691 1.20466 1.17238 1.20916 0.88866 0.95923 0.99229 1.21293 0.94473 1.09278 0.96919 1.96772 1.59542 1.83873 1.56329 1.21382 0.99029 0.93551 0.99704 1.21401 0.97223 1.00849 0.92482 0.91447 0.90688 0.91447 0.91166 0.90679 0.90910 0.90908 0.90684 0.91166 0.84078 0.85337 0.90058 0.90055 0.83966 0.83942 0.80698 0.83001 0.85783 0.76119 0.83736 0.85330 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.08 8.65 113.37 0.98 3.06 16 2 Si 1.13 -7.93 12.32 68.60 0.85 -7.09 16 3 C -0.46 2.63 8.53 113.37 0.97 3.59 16 4 C -0.46 2.62 8.53 113.37 0.97 3.59 16 5 C -0.37 0.79 4.59 22.27 0.10 0.89 16 6 C -0.10 0.10 9.29 22.27 0.21 0.30 16 7 C -0.12 -0.13 9.70 22.27 0.22 0.08 16 8 C -0.11 -0.24 5.52 -19.87 -0.11 -0.35 16 9 C 0.11 0.30 5.59 71.24 0.40 0.70 16 10 O -0.34 -0.88 10.20 -51.46 -0.53 -1.41 16 11 C 0.46 1.87 8.03 71.24 0.57 2.44 16 12 O -0.52 -6.65 16.25 28.39 0.46 -6.19 16 13 C 0.06 -0.21 5.33 71.24 0.38 0.17 16 14 O -0.31 -1.34 9.01 -73.50 -0.66 -2.00 16 15 C 0.15 0.32 6.68 22.52 0.15 0.47 16 16 C -0.19 0.83 9.04 22.36 0.20 1.03 16 17 C -0.07 0.31 8.66 22.26 0.19 0.50 16 18 C -0.15 0.30 5.39 -19.85 -0.11 0.19 16 19 C -0.08 0.30 2.82 71.24 0.20 0.50 16 20 O -0.55 0.85 12.77 -148.98 -1.90 -1.06 16 21 Si 0.98 -4.91 25.07 68.60 1.72 -3.19 16 22 H -0.24 1.46 7.11 99.48 0.71 2.17 16 23 H -0.28 0.06 7.11 99.48 0.71 0.77 16 24 H -0.25 1.25 7.11 99.48 0.71 1.96 16 25 C -0.03 -0.05 9.35 22.27 0.21 0.16 16 26 C -0.14 -0.67 6.24 22.40 0.14 -0.53 16 27 Br -0.05 -0.42 33.16 -20.37 -0.68 -1.10 16 28 C -0.12 -0.13 9.70 22.27 0.22 0.08 16 29 C -0.10 0.10 9.29 22.27 0.21 0.31 16 30 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 31 H 0.07 -0.37 7.96 -2.39 -0.02 -0.39 16 32 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 33 H 0.07 -0.36 7.96 -2.38 -0.02 -0.38 16 34 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 35 H 0.07 -0.44 7.69 -2.38 -0.02 -0.45 16 36 H 0.07 -0.44 7.69 -2.39 -0.02 -0.45 16 37 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 38 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 39 H 0.14 -0.74 7.43 -2.91 -0.02 -0.76 16 40 H 0.13 -0.17 8.06 -2.91 -0.02 -0.20 16 41 H 0.08 0.22 8.08 -2.38 -0.02 0.20 16 42 H 0.08 0.22 8.07 -2.39 -0.02 0.20 16 43 H 0.14 -1.39 7.65 -2.39 -0.02 -1.41 16 44 H 0.14 -1.40 7.67 -2.39 -0.02 -1.42 16 45 H 0.18 -2.05 6.30 -2.91 -0.02 -2.06 16 46 H 0.15 -1.36 4.87 -2.91 -0.01 -1.37 16 47 H 0.12 -0.60 7.96 -2.39 -0.02 -0.61 16 48 H 0.39 -3.12 8.70 -74.06 -0.64 -3.76 16 49 H 0.14 0.19 8.06 -2.91 -0.02 0.17 16 50 H 0.13 -0.18 8.06 -2.91 -0.02 -0.20 16 51 H 0.14 -0.74 7.43 -2.91 -0.02 -0.76 16 Total: 0.00 -21.87 450.49 6.42 -15.45 By element: Atomic # 1 Polarization: -11.66 SS G_CDS: 1.07 Total: -10.59 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 6.09 Total: 17.18 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: -2.63 Total: -10.66 kcal Atomic # 14 Polarization: -12.84 SS G_CDS: 2.56 Total: -10.28 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -0.68 Total: -1.10 kcal Total: -21.87 6.42 -15.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6201216_9435856.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.141 kcal (2) G-P(sol) polarization free energy of solvation -21.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds