Wall clock time and date at job start Sat Mar 6 2021 08:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35971 * 117.00088 * 2 1 4 4 C 1.39447 * 120.12187 * 179.97438 * 3 2 1 5 5 O 1.34767 * 133.23506 * 359.97438 * 4 3 2 6 6 C 1.34949 * 110.84484 * 179.72340 * 5 4 3 7 7 C 1.46817 * 125.15230 * 180.28391 * 6 5 4 8 8 O 1.21582 * 120.00171 * 180.19354 * 7 6 5 9 9 O 1.34863 * 120.00006 * 0.20137 * 7 6 5 10 10 C 1.45203 * 116.99969 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47079 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.84992 * 43.79789 * 11 10 9 13 13 C 1.53777 * 113.61139 * 174.99717 * 11 10 9 14 14 C 1.53791 * 87.08019 * 139.97986 * 13 11 10 15 15 H 1.08997 * 113.61705 * 89.10843 * 14 13 11 16 16 O 1.42900 * 113.61306 * 219.93485 * 14 13 11 17 17 C 1.53782 * 113.61026 * 272.49477 * 11 10 9 18 18 C 1.35897 * 109.69736 * 0.45721 * 6 5 4 19 19 C 1.40631 * 119.13222 * 179.97438 * 4 3 2 20 20 C 1.39788 * 120.11722 * 0.02562 * 19 4 3 21 21 C 1.50694 * 120.09713 * 179.97438 * 20 19 4 22 22 O 1.42906 * 109.46900 * 74.99997 * 21 20 19 23 23 Si 1.86301 * 109.47447 * 195.00047 * 21 20 19 24 24 C 1.36634 * 119.81152 * 0.02562 * 20 19 4 25 25 C 1.38260 * 120.11500 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.46953 * 300.00177 * 1 2 3 27 27 H 1.09000 * 109.47218 * 60.00284 * 1 2 3 28 28 H 1.08997 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46791 * 299.99494 * 10 9 7 30 30 H 1.08996 * 109.47271 * 59.99600 * 10 9 7 31 31 H 1.08994 * 113.61625 * 254.51968 * 13 11 10 32 32 H 1.09001 * 113.61710 * 25.35192 * 13 11 10 33 33 H 0.96703 * 113.99637 * 179.97438 * 16 14 13 34 34 H 1.09003 * 113.61470 * 334.56737 * 17 11 10 35 35 H 1.08997 * 113.61443 * 105.46830 * 17 11 10 36 36 H 1.08002 * 126.96016 * 179.83260 * 18 6 5 37 37 H 1.09004 * 109.47220 * 315.00609 * 21 20 19 38 38 H 0.96702 * 113.99865 * 60.00257 * 22 21 20 39 39 H 1.48502 * 109.99791 * 58.68584 * 23 21 20 40 40 H 1.48501 * 109.99966 * 180.02562 * 23 21 20 41 41 H 1.08004 * 119.74833 * 179.97438 * 24 20 19 42 42 H 1.07998 * 119.66509 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 0.0005 5 8 4.4139 0.3573 0.0016 6 6 5.6318 0.9385 -0.0044 7 6 6.9117 0.2192 -0.0111 8 8 7.9575 0.8392 -0.0126 9 8 6.9273 -1.1294 -0.0157 10 6 8.2286 -1.7736 -0.0216 11 6 8.0457 -3.2926 -0.0256 12 1 7.2731 -3.6241 -0.7195 13 6 9.3652 -4.0715 -0.1549 14 6 8.7919 -5.0591 0.8752 15 1 8.2228 -5.8745 0.4286 16 8 9.7530 -5.5115 1.8310 17 6 7.9154 -3.9010 1.3807 18 6 5.4942 2.2905 0.0006 19 6 4.0554 2.5513 0.0000 20 6 3.2764 3.7119 -0.0006 21 6 3.9377 5.0660 -0.0006 22 8 4.4606 5.3407 -1.3019 23 14 2.6856 6.3687 0.4533 24 6 1.9134 3.6152 0.0000 25 6 1.2956 2.3726 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 8.7795 -1.4713 -0.9122 30 1 8.7848 -1.4773 0.8677 31 1 9.5189 -4.5096 -1.1410 32 1 10.2346 -3.5204 0.2037 33 1 9.3981 -6.1326 2.4818 34 1 8.3883 -3.3037 2.1604 35 1 6.8987 -4.2012 1.6342 36 1 6.2870 3.0239 0.0003 37 1 4.7499 5.0737 0.7264 38 1 3.7921 5.3496 -2.0005 39 1 2.1112 6.0768 1.7912 40 1 3.3254 7.7089 0.4562 41 1 1.3125 4.5126 0.0000 42 1 0.2174 2.3119 -0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_6672430_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:59:01 Heat of formation + Delta-G solvation = -131.383680 kcal Electronic energy + Delta-G solvation = -28344.233903 eV Core-core repulsion = 24031.664348 eV Total energy + Delta-G solvation = -4312.569555 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.72941 -41.49910 -40.68131 -40.21754 -39.12636 -37.65166 -37.04366 -36.00688 -33.68056 -32.02192 -31.28469 -29.75357 -28.67196 -26.82528 -26.43467 -25.54008 -24.00108 -23.41918 -22.20179 -21.75592 -20.70714 -19.80753 -19.09630 -18.71515 -18.55264 -17.97082 -17.89196 -17.71657 -17.23850 -16.88981 -16.54268 -16.38976 -16.21852 -15.84013 -15.70528 -15.09019 -14.93103 -14.65632 -14.48690 -14.22949 -14.09582 -13.73765 -13.62206 -13.53122 -13.51565 -13.38041 -12.86886 -12.57409 -12.47653 -12.41173 -12.21081 -12.12275 -11.97332 -11.93892 -11.69532 -11.27952 -11.02666 -10.80942 -10.50127 -9.88124 -9.04426 -5.10884 -0.75284 0.06887 0.51681 0.99838 1.20928 1.59108 1.66462 1.74588 1.92974 2.01776 2.34865 3.05397 3.23918 3.34156 3.40737 3.48350 3.48498 3.57255 3.70106 3.75874 3.80380 3.84287 3.94232 4.05467 4.07752 4.08552 4.10233 4.17358 4.36090 4.36567 4.40684 4.45330 4.56345 4.69988 4.71326 4.76208 4.79965 4.90032 4.97786 5.03124 5.13941 5.16634 5.26674 5.31702 5.59284 6.15063 6.52404 6.52588 6.65932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.309 6.309 3 C 0.151 3.849 4 C 0.051 3.949 5 O -0.159 6.159 6 C -0.005 4.005 7 C 0.551 3.449 8 O -0.476 6.476 9 O -0.340 6.340 10 C 0.079 3.921 11 C -0.112 4.112 12 H 0.109 0.891 13 C -0.119 4.119 14 C 0.077 3.923 15 H 0.086 0.914 16 O -0.560 6.560 17 C -0.165 4.165 18 C -0.092 4.092 19 C -0.086 4.086 20 C -0.096 4.096 21 C -0.067 4.067 22 O -0.536 6.536 23 Si 0.687 3.313 24 C -0.087 4.087 25 C -0.174 4.174 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.381 0.619 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.178 0.822 37 H 0.114 0.886 38 H 0.379 0.621 39 H -0.255 1.255 40 H -0.252 1.252 41 H 0.142 0.858 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 -0.868 -1.219 7.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.222 6.222 3 C 0.105 3.895 4 C 0.003 3.997 5 O -0.060 6.060 6 C -0.053 4.053 7 C 0.394 3.606 8 O -0.364 6.364 9 O -0.256 6.256 10 C 0.005 3.995 11 C -0.130 4.130 12 H 0.127 0.873 13 C -0.157 4.157 14 C 0.018 3.982 15 H 0.103 0.897 16 O -0.365 6.365 17 C -0.203 4.203 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.097 4.097 21 C -0.178 4.178 22 O -0.341 6.341 23 Si 0.588 3.412 24 C -0.105 4.105 25 C -0.193 4.193 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.228 0.772 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.196 0.804 37 H 0.132 0.868 38 H 0.227 0.773 39 H -0.179 1.179 40 H -0.177 1.177 41 H 0.159 0.841 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.984 -0.169 -0.656 6.022 hybrid contribution -0.086 -0.655 0.505 0.832 sum -6.070 -0.824 -0.151 6.128 Atomic orbital electron populations 1.23208 0.77228 1.04860 1.01809 1.86203 1.22223 1.25534 1.88247 1.17741 0.86435 0.86004 0.99345 1.18858 0.87653 0.86894 1.06335 1.84179 1.12238 1.34130 1.75450 1.20631 0.82903 0.91132 1.10670 1.19208 0.86227 0.81420 0.73703 1.90991 1.31111 1.68829 1.45503 1.86659 1.35952 1.19550 1.83438 1.23242 0.81275 0.91520 1.03438 1.22385 0.99694 0.91604 0.99326 0.87322 1.23071 0.96910 0.96327 0.99357 1.23279 0.90226 0.94288 0.90438 0.89651 1.86527 1.38580 1.66466 1.44960 1.23805 1.01227 0.98518 0.96725 1.22790 0.95256 0.93647 0.99423 1.19349 0.92264 0.92210 1.04938 1.19490 0.92932 0.94380 1.02899 1.25080 1.05552 0.97746 0.89372 1.86542 1.38184 1.93356 1.16012 0.94964 0.82996 0.77779 0.85469 1.20405 0.93051 0.97312 0.99724 1.21008 1.00515 0.90452 1.07356 0.92070 0.91974 0.87586 0.90180 0.90280 0.89940 0.88632 0.77177 0.88992 0.90604 0.80436 0.86834 0.77348 1.17902 1.17661 0.84060 0.83211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 101.05 0.99 0.92 16 2 O -0.31 -0.52 10.50 -19.65 -0.21 -0.73 16 3 C 0.15 0.26 6.70 -39.12 -0.26 -0.01 16 4 C 0.05 0.18 7.35 -38.23 -0.28 -0.10 16 5 O -0.16 -0.76 10.60 1.81 0.02 -0.74 16 6 C 0.00 -0.02 7.11 -36.95 -0.26 -0.28 16 7 C 0.55 2.33 7.94 34.20 0.27 2.60 16 8 O -0.48 -2.72 16.62 -19.33 -0.32 -3.04 16 9 O -0.34 -1.14 10.23 -42.77 -0.44 -1.57 16 10 C 0.08 0.09 5.31 37.16 0.20 0.29 16 11 C -0.11 0.03 4.02 -89.81 -0.36 -0.33 16 12 H 0.11 -0.08 8.14 -51.93 -0.42 -0.50 16 13 C -0.12 0.06 7.47 -25.92 -0.19 -0.14 16 14 C 0.08 -0.03 5.21 -25.91 -0.14 -0.17 16 15 H 0.09 -0.16 8.14 -51.93 -0.42 -0.58 16 16 O -0.56 -0.49 13.67 -35.23 -0.48 -0.97 16 17 C -0.17 0.04 7.47 -25.92 -0.19 -0.15 16 18 C -0.09 -0.27 10.68 -37.22 -0.40 -0.66 16 19 C -0.09 -0.22 6.16 -105.21 -0.65 -0.87 16 20 C -0.10 -0.03 5.26 -104.63 -0.55 -0.58 16 21 C -0.07 0.03 2.70 36.00 0.10 0.12 16 22 O -0.54 -0.03 12.88 -35.23 -0.45 -0.48 16 23 Si 0.69 -1.22 29.92 -169.99 -5.09 -6.30 16 24 C -0.09 0.14 8.62 -39.96 -0.34 -0.21 16 25 C -0.17 0.20 9.03 -39.38 -0.36 -0.15 16 26 H 0.06 -0.25 7.66 -51.93 -0.40 -0.65 16 27 H 0.06 -0.26 7.66 -51.93 -0.40 -0.66 16 28 H 0.11 -0.42 8.14 -51.93 -0.42 -0.85 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.08 0.08 7.84 -51.93 -0.41 -0.32 16 31 H 0.08 -0.11 8.14 -51.93 -0.42 -0.54 16 32 H 0.10 0.01 8.10 -51.93 -0.42 -0.41 16 33 H 0.38 -1.19 9.12 45.56 0.42 -0.78 16 34 H 0.09 0.04 7.89 -51.93 -0.41 -0.37 16 35 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 36 H 0.18 0.31 8.06 -52.49 -0.42 -0.12 16 37 H 0.11 0.03 7.96 -51.93 -0.41 -0.39 16 38 H 0.38 -1.51 8.70 45.56 0.40 -1.11 16 39 H -0.25 -0.16 7.11 56.52 0.40 0.24 16 40 H -0.25 -0.42 7.11 56.52 0.40 -0.02 16 41 H 0.14 -0.65 5.07 -52.48 -0.27 -0.92 16 42 H 0.15 -0.62 6.26 -52.49 -0.33 -0.95 16 LS Contribution 362.66 15.07 5.47 5.47 Total: 0.00 -9.50 362.66 -8.32 -17.81 By element: Atomic # 1 Polarization: -5.35 SS G_CDS: -4.39 Total: -9.74 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -2.43 Total: 0.29 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -1.88 Total: -7.53 kcal Atomic # 14 Polarization: -1.22 SS G_CDS: -5.09 Total: -6.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -9.50 -8.32 -17.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6672430_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.570 kcal (2) G-P(sol) polarization free energy of solvation -9.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds