Wall clock time and date at job start Sat Mar 6 2021 08:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35971 * 117.00088 * 2 1 4 4 C 1.39447 * 120.12187 * 179.97438 * 3 2 1 5 5 O 1.34767 * 133.23506 * 359.97438 * 4 3 2 6 6 C 1.34949 * 110.84484 * 179.72340 * 5 4 3 7 7 C 1.46817 * 125.15230 * 180.28391 * 6 5 4 8 8 O 1.21582 * 120.00171 * 180.19354 * 7 6 5 9 9 O 1.34863 * 120.00006 * 0.20137 * 7 6 5 10 10 C 1.45203 * 116.99969 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47079 * 179.97438 * 10 9 7 12 12 H 1.09001 * 112.84992 * 43.79789 * 11 10 9 13 13 C 1.53777 * 113.61139 * 174.99717 * 11 10 9 14 14 C 1.53791 * 87.08019 * 139.97986 * 13 11 10 15 15 H 1.08997 * 113.61705 * 89.10843 * 14 13 11 16 16 O 1.42900 * 113.61306 * 219.93485 * 14 13 11 17 17 C 1.53782 * 113.61026 * 272.49477 * 11 10 9 18 18 C 1.35897 * 109.69736 * 0.45721 * 6 5 4 19 19 C 1.40631 * 119.13222 * 179.97438 * 4 3 2 20 20 C 1.39788 * 120.11722 * 0.02562 * 19 4 3 21 21 C 1.50694 * 120.09713 * 179.97438 * 20 19 4 22 22 O 1.42906 * 109.46900 * 74.99997 * 21 20 19 23 23 Si 1.86301 * 109.47447 * 195.00047 * 21 20 19 24 24 C 1.36634 * 119.81152 * 0.02562 * 20 19 4 25 25 C 1.38260 * 120.11500 * 359.97438 * 3 2 1 26 26 H 1.09004 * 109.46953 * 300.00177 * 1 2 3 27 27 H 1.09000 * 109.47218 * 60.00284 * 1 2 3 28 28 H 1.08997 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46791 * 299.99494 * 10 9 7 30 30 H 1.08996 * 109.47271 * 59.99600 * 10 9 7 31 31 H 1.08994 * 113.61625 * 254.51968 * 13 11 10 32 32 H 1.09001 * 113.61710 * 25.35192 * 13 11 10 33 33 H 0.96703 * 113.99637 * 179.97438 * 16 14 13 34 34 H 1.09003 * 113.61470 * 334.56737 * 17 11 10 35 35 H 1.08997 * 113.61443 * 105.46830 * 17 11 10 36 36 H 1.08002 * 126.96016 * 179.83260 * 18 6 5 37 37 H 1.09004 * 109.47220 * 315.00609 * 21 20 19 38 38 H 0.96702 * 113.99865 * 60.00257 * 22 21 20 39 39 H 1.48502 * 109.99791 * 58.68584 * 23 21 20 40 40 H 1.48501 * 109.99966 * 180.02562 * 23 21 20 41 41 H 1.08004 * 119.74833 * 179.97438 * 24 20 19 42 42 H 1.07998 * 119.66509 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 0.0005 5 8 4.4139 0.3573 0.0016 6 6 5.6318 0.9385 -0.0044 7 6 6.9117 0.2192 -0.0111 8 8 7.9575 0.8392 -0.0126 9 8 6.9273 -1.1294 -0.0157 10 6 8.2286 -1.7736 -0.0216 11 6 8.0457 -3.2926 -0.0256 12 1 7.2731 -3.6241 -0.7195 13 6 9.3652 -4.0715 -0.1549 14 6 8.7919 -5.0591 0.8752 15 1 8.2228 -5.8745 0.4286 16 8 9.7530 -5.5115 1.8310 17 6 7.9154 -3.9010 1.3807 18 6 5.4942 2.2905 0.0006 19 6 4.0554 2.5513 0.0000 20 6 3.2764 3.7119 -0.0006 21 6 3.9377 5.0660 -0.0006 22 8 4.4606 5.3407 -1.3019 23 14 2.6856 6.3687 0.4533 24 6 1.9134 3.6152 0.0000 25 6 1.2956 2.3726 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 8.7795 -1.4713 -0.9122 30 1 8.7848 -1.4773 0.8677 31 1 9.5189 -4.5096 -1.1410 32 1 10.2346 -3.5204 0.2037 33 1 9.3981 -6.1326 2.4818 34 1 8.3883 -3.3037 2.1604 35 1 6.8987 -4.2012 1.6342 36 1 6.2870 3.0239 0.0003 37 1 4.7499 5.0737 0.7264 38 1 3.7921 5.3496 -2.0005 39 1 2.1112 6.0768 1.7912 40 1 3.3254 7.7089 0.4562 41 1 1.3125 4.5126 0.0000 42 1 0.2174 2.3119 -0.0005 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6672430_11354868.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:59:00 Heat of formation + Delta-G solvation = -133.148262 kcal Electronic energy + Delta-G solvation = -28344.310421 eV Core-core repulsion = 24031.664348 eV Total energy + Delta-G solvation = -4312.646073 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.123 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.88206 -41.73921 -40.67793 -40.26480 -39.10959 -37.92027 -37.02174 -36.04469 -33.82654 -32.05344 -31.36156 -29.81701 -28.53564 -26.80877 -26.39916 -25.65573 -24.07723 -23.45759 -22.32606 -21.89817 -20.72275 -19.92897 -19.18458 -18.75932 -18.56038 -18.19690 -18.05993 -17.73762 -17.36736 -16.90266 -16.50988 -16.37169 -16.20702 -15.79185 -15.77276 -15.17505 -14.95599 -14.65136 -14.54448 -14.36912 -14.19846 -13.86537 -13.60966 -13.52622 -13.47202 -13.31226 -12.95547 -12.52229 -12.42722 -12.32094 -12.30412 -12.24195 -12.10989 -11.92577 -11.77160 -11.29434 -11.13123 -10.79325 -10.45655 -9.97508 -9.07400 -4.99035 -0.91515 0.04155 0.37543 0.81479 1.29467 1.47336 1.52023 1.69681 2.01428 2.10376 2.34034 2.98843 3.24910 3.32648 3.38454 3.49376 3.58518 3.62199 3.66517 3.74119 3.80844 3.86532 3.89105 4.06029 4.07780 4.12575 4.26092 4.30909 4.37002 4.41418 4.42756 4.56421 4.69753 4.70365 4.74668 4.76003 4.80708 4.88291 4.96098 4.98702 5.06082 5.15219 5.28873 5.32826 5.51239 6.18207 6.27522 6.78836 6.84639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.337 6.337 3 C 0.133 3.867 4 C 0.024 3.976 5 O -0.179 6.179 6 C -0.026 4.026 7 C 0.554 3.446 8 O -0.499 6.499 9 O -0.345 6.345 10 C 0.073 3.927 11 C -0.106 4.106 12 H 0.116 0.884 13 C -0.120 4.120 14 C 0.078 3.922 15 H 0.104 0.896 16 O -0.581 6.581 17 C -0.166 4.166 18 C -0.088 4.088 19 C -0.102 4.102 20 C -0.102 4.102 21 C -0.081 4.081 22 O -0.554 6.554 23 Si 0.797 3.203 24 C -0.078 4.078 25 C -0.157 4.157 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.396 0.604 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.183 0.817 37 H 0.100 0.900 38 H 0.396 0.604 39 H -0.280 1.280 40 H -0.301 1.301 41 H 0.179 0.821 42 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.479 -0.378 -1.597 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.251 6.251 3 C 0.087 3.913 4 C -0.024 4.024 5 O -0.081 6.081 6 C -0.074 4.074 7 C 0.399 3.601 8 O -0.389 6.389 9 O -0.261 6.261 10 C 0.001 3.999 11 C -0.125 4.125 12 H 0.134 0.866 13 C -0.157 4.157 14 C 0.019 3.981 15 H 0.121 0.879 16 O -0.390 6.390 17 C -0.204 4.204 18 C -0.107 4.107 19 C -0.103 4.103 20 C -0.103 4.103 21 C -0.189 4.189 22 O -0.362 6.362 23 Si 0.701 3.299 24 C -0.095 4.095 25 C -0.175 4.175 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.132 0.868 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.200 0.800 37 H 0.118 0.882 38 H 0.247 0.753 39 H -0.206 1.206 40 H -0.230 1.230 41 H 0.196 0.804 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.384 0.275 -1.050 8.454 hybrid contribution 0.600 -0.768 0.640 1.166 sum -7.783 -0.493 -0.411 7.810 Atomic orbital electron populations 1.23515 0.75092 1.06050 1.03400 1.86168 1.24551 1.25930 1.88428 1.18050 0.85950 0.87101 1.00218 1.19381 0.88480 0.87044 1.07523 1.84122 1.12655 1.35076 1.76281 1.20636 0.82838 0.91505 1.12447 1.19291 0.86187 0.81590 0.73061 1.90960 1.31833 1.69216 1.46921 1.86660 1.37119 1.19183 1.83136 1.23433 0.80568 0.92425 1.03518 1.22381 1.00185 0.90355 0.99553 0.86596 1.23086 0.96301 0.96274 1.00088 1.23371 0.89958 0.94621 0.90157 0.87862 1.86483 1.39583 1.67148 1.45739 1.23788 1.01451 0.98693 0.96422 1.22967 0.96079 0.93384 0.98280 1.19549 0.91929 0.92932 1.05913 1.19709 0.93775 0.93812 1.02956 1.25380 1.06021 0.98355 0.89184 1.86507 1.39686 1.93324 1.16709 0.93812 0.80330 0.73085 0.82693 1.20839 0.92411 0.98658 0.97573 1.21487 1.02103 0.89357 1.04573 0.90504 0.90172 0.86846 0.89779 0.90592 0.88752 0.89537 0.75401 0.90059 0.90232 0.80017 0.88208 0.75340 1.20616 1.22961 0.80383 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.09 9.81 113.37 1.11 1.02 16 2 O -0.34 -1.19 10.50 -93.22 -0.98 -2.17 16 3 C 0.13 0.45 6.70 22.57 0.15 0.60 16 4 C 0.02 0.21 7.35 23.15 0.17 0.38 16 5 O -0.18 -2.22 10.60 -12.76 -0.14 -2.36 16 6 C -0.03 -0.28 7.11 23.97 0.17 -0.11 16 7 C 0.55 6.27 7.94 70.07 0.56 6.83 16 8 O -0.50 -7.09 16.62 19.57 0.33 -6.77 16 9 O -0.34 -3.14 10.23 -56.02 -0.57 -3.72 16 10 C 0.07 0.31 5.31 71.98 0.38 0.69 16 11 C -0.11 -0.04 4.02 -10.27 -0.04 -0.08 16 12 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 13 C -0.12 0.05 7.47 31.12 0.23 0.28 16 14 C 0.08 -0.05 5.21 31.13 0.16 0.11 16 15 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 16 O -0.58 -1.21 13.67 -148.98 -2.04 -3.24 16 17 C -0.17 -0.07 7.47 31.12 0.23 0.16 16 18 C -0.09 -0.72 10.68 23.80 0.25 -0.47 16 19 C -0.10 -0.65 6.16 -20.24 -0.12 -0.77 16 20 C -0.10 -0.02 5.26 -19.87 -0.10 -0.13 16 21 C -0.08 0.08 2.70 71.23 0.19 0.27 16 22 O -0.55 -0.01 12.88 -148.98 -1.92 -1.93 16 23 Si 0.80 -3.93 29.92 68.60 2.05 -1.88 16 24 C -0.08 0.42 8.62 22.02 0.19 0.61 16 25 C -0.16 0.71 9.03 22.40 0.20 0.91 16 26 H 0.08 -0.79 7.66 -2.39 -0.02 -0.81 16 27 H 0.08 -0.86 7.66 -2.39 -0.02 -0.88 16 28 H 0.11 -1.00 8.14 -2.39 -0.02 -1.02 16 29 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.08 0.35 7.84 -2.39 -0.02 0.33 16 31 H 0.09 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.09 0.13 8.10 -2.39 -0.02 0.11 16 33 H 0.40 -2.40 9.12 -74.06 -0.68 -3.08 16 34 H 0.08 0.21 7.89 -2.39 -0.02 0.19 16 35 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.18 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.10 0.14 7.96 -2.38 -0.02 0.12 16 38 H 0.40 -3.51 8.70 -74.06 -0.64 -4.15 16 39 H -0.28 0.17 7.11 99.48 0.71 0.87 16 40 H -0.30 -1.03 7.11 99.48 0.71 -0.32 16 41 H 0.18 -2.36 5.07 -2.91 -0.01 -2.38 16 42 H 0.19 -2.28 6.26 -2.91 -0.02 -2.30 16 Total: 0.00 -24.97 362.66 0.28 -24.69 By element: Atomic # 1 Polarization: -12.73 SS G_CDS: -0.19 Total: -12.92 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 3.74 Total: 10.29 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -5.32 Total: -20.18 kcal Atomic # 14 Polarization: -3.93 SS G_CDS: 2.05 Total: -1.88 kcal Total: -24.97 0.28 -24.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6672430_11354868.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.458 kcal (2) G-P(sol) polarization free energy of solvation -24.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds