Wall clock time and date at job start Sat Mar 6 2021 09:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35971 * 117.00224 * 2 1 4 4 C 1.39441 * 120.12141 * 180.02562 * 3 2 1 5 5 O 1.34776 * 133.23321 * 359.97438 * 4 3 2 6 6 C 1.34944 * 110.84138 * 180.02562 * 5 4 3 7 7 C 1.46827 * 125.14988 * 179.97438 * 6 5 4 8 8 O 1.21573 * 119.99770 * 180.02562 * 7 6 5 9 9 O 1.34852 * 119.99945 * 0.02562 * 7 6 5 10 10 C 1.45195 * 117.00137 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47366 * 179.97438 * 10 9 7 12 12 O 1.20759 * 119.99844 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00115 * 179.97438 * 11 10 9 14 14 H 1.09006 * 109.47249 * 45.93821 * 13 11 10 15 15 C 1.53000 * 109.47108 * 165.93591 * 13 11 10 16 16 C 1.52996 * 109.47029 * 60.00163 * 15 13 11 17 17 C 1.53001 * 109.46997 * 60.00238 * 16 15 13 18 18 H 1.09002 * 109.47520 * 59.99916 * 17 16 15 19 19 C 1.53002 * 109.47262 * 179.97438 * 17 16 15 20 20 F 1.39900 * 109.46822 * 59.99657 * 19 17 16 21 21 F 1.39891 * 109.47405 * 179.97438 * 19 17 16 22 22 F 1.39905 * 109.47206 * 300.00168 * 19 17 16 23 23 C 1.53000 * 109.47036 * 299.99757 * 17 16 15 24 24 C 1.52996 * 109.47029 * 60.00262 * 23 17 16 25 25 C 1.35895 * 109.70205 * 359.97438 * 6 5 4 26 26 C 1.40628 * 119.13488 * 179.70573 * 4 3 2 27 27 C 1.39794 * 120.11299 * 0.52520 * 26 4 3 28 28 C 1.50698 * 120.09485 * 179.74489 * 27 26 4 29 29 O 1.42905 * 109.46933 * 74.72684 * 28 27 26 30 30 Si 1.86304 * 109.47164 * 194.72441 * 28 27 26 31 31 C 1.36625 * 119.81174 * 359.47272 * 27 26 4 32 32 C 1.38259 * 120.11785 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.47094 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47266 * 300.00482 * 1 2 3 35 35 H 1.09005 * 109.46539 * 60.00484 * 1 2 3 36 36 H 1.09006 * 109.46899 * 299.99809 * 10 9 7 37 37 H 1.09002 * 109.47343 * 59.99554 * 10 9 7 38 38 H 1.09000 * 109.47117 * 180.02562 * 15 13 11 39 39 H 1.09005 * 109.47338 * 299.99949 * 15 13 11 40 40 H 1.09003 * 109.47226 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47482 * 300.00157 * 16 15 13 42 42 H 1.09006 * 109.47210 * 179.97438 * 23 17 16 43 43 H 1.09000 * 109.47117 * 299.99882 * 23 17 16 44 44 H 1.09003 * 109.47226 * 179.97438 * 24 23 17 45 45 H 1.09000 * 109.47482 * 59.99843 * 24 23 17 46 46 H 1.08008 * 126.95932 * 180.02562 * 25 6 5 47 47 H 1.09003 * 109.47306 * 314.72752 * 28 27 26 48 48 H 0.96701 * 113.99813 * 180.02562 * 29 28 27 49 49 H 1.48501 * 109.99973 * 178.68166 * 30 28 27 50 50 H 1.48497 * 110.00120 * 300.00161 * 30 28 27 51 51 H 1.08004 * 119.75311 * 180.29867 * 31 27 26 52 52 H 1.08008 * 119.66006 * 0.02784 * 32 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 3.4387 1.2874 -0.0005 5 8 4.4139 0.3571 -0.0007 6 6 5.6318 0.9383 -0.0007 7 6 6.9117 0.2189 -0.0003 8 8 7.9575 0.8389 0.0001 9 8 6.9273 -1.1296 -0.0004 10 6 8.2285 -1.7738 0.0006 11 6 8.0483 -3.2700 0.0010 12 8 6.9378 -3.7444 0.0000 13 6 9.2539 -4.1742 0.0014 14 1 9.9733 -3.8202 0.7399 15 6 8.8223 -5.5995 0.3523 16 6 7.8126 -6.0963 -0.6843 17 6 8.4585 -6.0859 -2.0712 18 1 9.3306 -6.7399 -2.0709 19 6 7.4490 -6.5834 -3.1078 20 9 6.3295 -5.7444 -3.1083 21 9 8.0394 -6.5733 -4.3760 22 9 7.0548 -7.8868 -2.7867 23 6 8.8901 -4.6606 -2.4221 24 6 9.8998 -4.1637 -1.3855 25 6 5.4943 2.2903 -0.0012 26 6 4.0555 2.5511 -0.0068 27 6 3.2764 3.7118 -0.0014 28 6 3.9379 5.0659 -0.0023 29 8 4.4598 5.3401 -1.3041 30 14 2.6862 6.3688 0.4520 31 6 1.9136 3.6152 -0.0008 32 6 1.2958 2.3726 -0.0005 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 -0.3632 0.5138 -0.8901 36 1 8.7828 -1.4745 -0.8890 37 1 8.7814 -1.4746 0.8910 38 1 9.6944 -6.2534 0.3530 39 1 8.3622 -5.6070 1.3404 40 1 7.5048 -7.1116 -0.4341 41 1 6.9406 -5.4424 -0.6847 42 1 9.3507 -4.6532 -3.4100 43 1 8.0181 -4.0066 -2.4225 44 1 10.2076 -3.1484 -1.6357 45 1 10.7718 -4.8177 -1.3851 46 1 6.2871 3.0237 -0.0017 47 1 4.7506 5.0738 0.7240 48 1 4.9010 6.1974 -1.3783 49 1 3.3333 7.7050 0.4857 50 1 1.5729 6.3683 -0.5307 51 1 1.3126 4.5126 -0.0015 52 1 0.2174 2.3119 -0.0005 There are 81 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 81 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6672430_12428076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:49:25 Heat of formation + Delta-G solvation = -292.903793 kcal Electronic energy + Delta-G solvation = -44756.623836 eV Core-core repulsion = 38433.849319 eV Total energy + Delta-G solvation = -6322.774517 eV No. of doubly occupied orbitals = 81 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 443.141 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -51.18749 -48.67785 -48.66999 -43.88471 -42.04184 -41.28244 -40.64524 -39.05702 -38.51527 -37.71790 -37.23554 -33.84334 -33.55637 -32.17002 -32.00366 -31.43325 -30.18224 -28.63417 -27.04379 -26.34655 -25.54721 -24.11165 -23.91047 -23.67708 -22.34920 -22.02122 -21.81409 -20.41271 -19.90215 -19.33785 -19.27859 -19.08835 -18.67066 -18.59859 -18.47409 -18.35926 -18.24515 -17.51719 -17.17695 -16.81988 -16.65826 -16.44565 -16.37220 -15.93824 -15.72827 -15.63169 -15.59449 -15.29522 -15.12136 -14.98087 -14.85651 -14.83648 -14.80181 -14.68136 -14.52106 -14.27391 -14.15243 -14.04958 -14.01899 -13.97600 -13.54229 -13.43426 -13.29523 -13.26871 -13.24532 -12.88776 -12.58226 -12.44344 -12.41439 -12.19753 -12.11516 -12.10608 -12.04636 -11.74861 -11.41361 -11.29237 -11.14226 -10.48942 -10.34027 -9.99327 -9.09627 -4.88771 -0.91721 0.01274 0.36594 0.77323 0.77756 1.28044 1.44899 1.47511 1.63001 1.74251 1.95213 2.07237 2.28732 2.65237 2.78594 2.92741 3.00301 3.13804 3.31443 3.47321 3.54197 3.62333 3.64147 3.66450 3.78164 3.84536 3.89809 3.90926 3.98152 4.00159 4.04857 4.08884 4.14847 4.25134 4.26079 4.32664 4.35872 4.37646 4.39182 4.47432 4.66898 4.70283 4.71675 4.77090 4.79401 4.82802 4.90181 4.95340 4.97943 5.09461 5.14227 5.14762 5.18641 5.27471 5.36687 5.49813 6.13598 6.23759 6.44419 6.59839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.337 6.337 3 C 0.131 3.869 4 C 0.024 3.976 5 O -0.184 6.184 6 C -0.032 4.032 7 C 0.558 3.442 8 O -0.486 6.486 9 O -0.344 6.344 10 C 0.000 4.000 11 C 0.359 3.641 12 O -0.456 6.456 13 C -0.125 4.125 14 H 0.149 0.851 15 C -0.098 4.098 16 C -0.147 4.147 17 C -0.121 4.121 18 H 0.141 0.859 19 C 0.442 3.558 20 F -0.197 7.197 21 F -0.190 7.190 22 F -0.192 7.192 23 C -0.132 4.132 24 C -0.100 4.100 25 C -0.077 4.077 26 C -0.101 4.101 27 C -0.057 4.057 28 C -0.091 4.091 29 O -0.557 6.557 30 Si 0.776 3.224 31 C -0.090 4.090 32 C -0.158 4.158 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.104 0.896 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.195 0.805 47 H 0.093 0.907 48 H 0.396 0.604 49 H -0.285 1.285 50 H -0.283 1.283 51 H 0.165 0.835 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 4.234 5.359 7.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.251 6.251 3 C 0.085 3.915 4 C -0.025 4.025 5 O -0.086 6.086 6 C -0.080 4.080 7 C 0.402 3.598 8 O -0.375 6.375 9 O -0.260 6.260 10 C -0.073 4.073 11 C 0.234 3.766 12 O -0.329 6.329 13 C -0.143 4.143 14 H 0.166 0.834 15 C -0.135 4.135 16 C -0.184 4.184 17 C -0.140 4.140 18 H 0.158 0.842 19 C 0.388 3.612 20 F -0.178 7.178 21 F -0.171 7.171 22 F -0.173 7.173 23 C -0.169 4.169 24 C -0.137 4.137 25 C -0.096 4.096 26 C -0.102 4.102 27 C -0.057 4.057 28 C -0.198 4.198 29 O -0.367 6.367 30 Si 0.679 3.321 31 C -0.107 4.107 32 C -0.176 4.176 33 H 0.131 0.869 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.132 0.868 46 H 0.212 0.788 47 H 0.111 0.889 48 H 0.247 0.753 49 H -0.212 1.212 50 H -0.210 1.210 51 H 0.182 0.818 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.713 3.737 4.969 6.449 hybrid contribution 0.299 0.079 -1.378 1.412 sum 2.012 3.816 3.591 5.613 Atomic orbital electron populations 1.23504 0.75195 1.05998 1.03339 1.86178 1.24509 1.25988 1.88454 1.18051 0.86224 0.86905 1.00297 1.19353 0.88408 0.87213 1.07489 1.84156 1.12945 1.35198 1.76284 1.20741 0.82846 0.91698 1.12670 1.19198 0.86263 0.81131 0.73173 1.90951 1.31133 1.68843 1.46600 1.86754 1.35999 1.19792 1.83486 1.24117 0.82669 0.92545 1.08002 1.25100 0.91613 0.89749 0.70114 1.90392 1.29743 1.77587 1.35169 1.21841 0.95565 0.94963 1.01963 0.83387 1.21403 0.99516 0.94525 0.98048 1.22045 1.00974 1.03243 0.92163 1.22579 0.97322 1.01073 0.93061 0.84165 1.21233 0.82265 0.75002 0.82654 1.93166 1.56232 1.71789 1.96662 1.93161 1.83630 1.96279 1.44036 1.93161 1.92112 1.39478 1.92585 1.21774 1.00382 0.92916 1.01878 1.21568 0.97832 1.04727 0.89616 1.22987 0.95646 0.93246 0.97759 1.19565 0.92430 0.92482 1.05711 1.18678 0.92989 0.92253 1.01785 1.25121 1.06366 1.00189 0.88142 1.86575 1.77316 1.42650 1.30157 0.93947 0.76613 0.73921 0.87606 1.20877 0.93132 0.98708 0.97988 1.21392 1.01918 0.89361 1.04964 0.86853 0.90042 0.90756 0.85194 0.84596 0.87753 0.91138 0.91104 0.89906 0.89142 0.93104 0.88300 0.86823 0.78817 0.88899 0.75330 1.21193 1.20978 0.81833 0.80024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.34 -2.57 10.50 -93.22 -0.98 -3.55 16 3 C 0.13 0.94 6.70 22.56 0.15 1.09 16 4 C 0.02 0.27 7.35 23.14 0.17 0.44 16 5 O -0.18 -2.70 10.60 -12.80 -0.14 -2.84 16 6 C -0.03 -0.33 7.11 23.97 0.17 -0.16 16 7 C 0.56 5.04 7.94 70.07 0.56 5.59 16 8 O -0.49 -4.34 16.62 19.60 0.33 -4.01 16 9 O -0.34 -3.03 9.77 -50.47 -0.49 -3.52 16 10 C 0.00 0.00 5.87 71.24 0.42 0.42 16 11 C 0.36 0.01 5.12 29.10 0.15 0.16 16 12 O -0.46 -4.36 13.37 17.40 0.23 -4.13 16 13 C -0.12 1.02 2.94 -11.54 -0.03 0.99 16 14 H 0.15 -2.20 8.14 -2.38 -0.02 -2.22 16 15 C -0.10 0.54 5.21 30.59 0.16 0.70 16 16 C -0.15 -0.11 4.67 30.59 0.14 0.03 16 17 C -0.12 0.13 2.16 -10.79 -0.02 0.11 16 18 H 0.14 -0.91 8.14 -2.39 -0.02 -0.93 16 19 C 0.44 2.60 2.69 71.98 0.19 2.79 16 20 F -0.20 -2.19 16.28 44.97 0.73 -1.46 16 21 F -0.19 -1.24 16.80 44.97 0.76 -0.49 16 22 F -0.19 -1.51 16.80 44.97 0.76 -0.75 16 23 C -0.13 0.42 4.74 30.59 0.15 0.56 16 24 C -0.10 1.02 5.42 30.59 0.17 1.18 16 25 C -0.08 -0.53 10.68 23.80 0.25 -0.28 16 26 C -0.10 -0.78 6.16 -20.24 -0.12 -0.91 16 27 C -0.06 -0.18 5.30 -19.87 -0.11 -0.28 16 28 C -0.09 0.11 2.70 71.24 0.19 0.30 16 29 O -0.56 -0.91 12.86 -148.98 -1.92 -2.82 16 30 Si 0.78 -3.54 30.20 68.60 2.07 -1.47 16 31 C -0.09 0.01 8.62 22.02 0.19 0.20 16 32 C -0.16 -0.01 9.03 22.40 0.20 0.19 16 33 H 0.11 -0.57 8.14 -2.39 -0.02 -0.59 16 34 H 0.08 -0.59 7.66 -2.39 -0.02 -0.61 16 35 H 0.07 -0.45 7.66 -2.38 -0.02 -0.47 16 36 H 0.13 -0.69 7.84 -2.38 -0.02 -0.71 16 37 H 0.14 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.10 -1.08 8.14 -2.39 -0.02 -1.09 16 39 H 0.07 -0.26 8.14 -2.38 -0.02 -0.28 16 40 H 0.07 0.09 7.80 -2.39 -0.02 0.07 16 41 H 0.08 0.64 4.72 -2.39 -0.01 0.62 16 42 H 0.09 -0.39 7.80 -2.38 -0.02 -0.41 16 43 H 0.05 0.11 6.85 -2.39 -0.02 0.09 16 44 H 0.10 -1.28 7.85 -2.39 -0.02 -1.30 16 45 H 0.11 -1.62 8.14 -2.39 -0.02 -1.64 16 46 H 0.19 0.41 8.06 -2.91 -0.02 0.38 16 47 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 48 H 0.40 -2.64 8.74 -74.06 -0.65 -3.29 16 49 H -0.29 0.05 7.11 99.48 0.71 0.75 16 50 H -0.28 -0.15 6.75 99.48 0.67 0.53 16 51 H 0.16 -0.84 4.85 -2.91 -0.01 -0.86 16 52 H 0.18 -1.33 6.26 -2.91 -0.02 -1.35 16 Total: 0.00 -31.27 438.91 5.82 -25.45 By element: Atomic # 1 Polarization: -14.99 SS G_CDS: 0.38 Total: -14.61 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 4.08 Total: 14.20 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -2.96 Total: -20.87 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 2.24 Total: -2.70 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: 2.07 Total: -1.47 kcal Total: -31.27 5.82 -25.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6672430_12428076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.451 kcal (2) G-P(sol) polarization free energy of solvation -31.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -298.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds