Wall clock time and date at job start Sat Mar 6 2021 09:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35960 * 117.00218 * 2 1 4 4 C 1.39454 * 120.12346 * 180.02562 * 3 2 1 5 5 O 1.34772 * 133.23247 * 0.02562 * 4 3 2 6 6 C 1.34945 * 110.84058 * 179.97438 * 5 4 3 7 7 C 1.46821 * 125.14911 * 179.97438 * 6 5 4 8 8 O 1.21581 * 120.00034 * 180.02562 * 7 6 5 9 9 O 1.34852 * 119.99986 * 0.02562 * 7 6 5 10 10 C 1.45206 * 116.99921 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38235 * 120.00021 * 269.73135 * 11 10 9 13 13 C 1.38241 * 119.99893 * 179.76589 * 12 11 10 14 14 C 1.38225 * 119.99850 * 0.50558 * 13 12 11 15 15 Si 1.86810 * 120.00038 * 179.72534 * 14 13 12 16 16 C 1.86301 * 109.47053 * 270.02149 * 15 14 13 17 17 C 1.86294 * 109.46708 * 30.01914 * 15 14 13 18 18 C 1.86301 * 109.47181 * 150.02016 * 15 14 13 19 19 C 1.38234 * 120.00285 * 359.74520 * 14 13 12 20 20 C 1.38228 * 120.00099 * 89.99924 * 11 10 9 21 21 C 1.35898 * 109.70275 * 0.02562 * 6 5 4 22 22 C 1.40627 * 119.13246 * 179.97438 * 4 3 2 23 23 C 1.39793 * 120.11834 * 0.05520 * 22 4 3 24 24 C 1.50703 * 120.09379 * 180.02562 * 23 22 4 25 25 O 1.42902 * 109.46999 * 74.97437 * 24 23 22 26 26 Si 1.86298 * 109.46974 * 194.97326 * 24 23 22 27 27 H 1.48492 * 109.47141 * 60.00171 * 26 24 23 28 28 H 1.48500 * 109.47025 * 179.97438 * 26 24 23 29 29 H 1.48507 * 109.47140 * 299.99801 * 26 24 23 30 30 C 1.36627 * 119.81279 * 359.97438 * 23 22 4 31 31 C 1.38268 * 120.11972 * 0.35499 * 3 2 1 32 32 H 1.09001 * 109.47787 * 60.00056 * 1 2 3 33 33 H 1.09002 * 109.47392 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47020 * 299.99445 * 1 2 3 35 35 H 1.09000 * 109.47104 * 299.99937 * 10 9 7 36 36 H 1.09002 * 109.46769 * 60.00033 * 10 9 7 37 37 H 1.08004 * 119.99925 * 359.97438 * 12 11 10 38 38 H 1.08003 * 119.99733 * 180.22878 * 13 12 11 39 39 H 1.09005 * 109.47095 * 59.99456 * 16 15 14 40 40 H 1.08992 * 109.47173 * 179.97438 * 16 15 14 41 41 H 1.09003 * 109.46864 * 299.99901 * 16 15 14 42 42 H 1.09000 * 109.47402 * 60.00511 * 17 15 14 43 43 H 1.09007 * 109.46838 * 180.02562 * 17 15 14 44 44 H 1.09000 * 109.47475 * 299.99716 * 17 15 14 45 45 H 1.08995 * 109.46887 * 59.99815 * 18 15 14 46 46 H 1.08992 * 109.46961 * 179.97438 * 18 15 14 47 47 H 1.08995 * 109.47061 * 300.00132 * 18 15 14 48 48 H 1.08002 * 120.00392 * 179.97438 * 19 14 13 49 49 H 1.08001 * 120.00328 * 0.02562 * 20 11 10 50 50 H 1.08005 * 126.96166 * 180.02562 * 21 6 5 51 51 H 1.08999 * 109.46992 * 314.97732 * 24 23 22 52 52 H 0.96696 * 114.00141 * 60.00462 * 25 24 23 53 53 H 1.08002 * 119.75001 * 179.97438 * 30 23 22 54 54 H 1.08001 * 119.65317 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 3.4387 1.2873 -0.0005 5 8 4.4139 0.3571 -0.0016 6 6 5.6318 0.9384 -0.0023 7 6 6.9117 0.2190 -0.0029 8 8 7.9575 0.8390 -0.0030 9 8 6.9273 -1.1294 -0.0033 10 6 8.2286 -1.7736 -0.0045 11 6 8.0484 -3.2698 -0.0042 12 6 7.9725 -3.9566 1.1931 13 6 7.8024 -5.3285 1.1934 14 6 7.7187 -6.0148 -0.0036 15 14 7.4965 -7.8696 -0.0032 16 6 9.1666 -8.6951 -0.0047 17 6 6.5521 -8.3815 1.5188 18 6 6.5493 -8.3818 -1.5235 19 6 7.7998 -5.3286 -1.2009 20 6 7.9646 -3.9561 -1.2011 21 6 5.4942 2.2904 -0.0011 22 6 4.0554 2.5511 -0.0011 23 6 3.2763 3.7118 0.0001 24 6 3.9378 5.0659 -0.0011 25 8 4.4586 5.3405 -1.3032 26 14 2.6864 6.3687 0.4547 27 1 2.1453 6.0834 1.8077 28 1 3.3384 7.7029 0.4541 29 1 1.5784 6.3582 -0.5341 30 6 1.9135 3.6152 0.0012 31 6 1.2956 2.3726 0.0074 32 1 -0.3635 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 8.7815 -1.4741 -0.8948 36 1 8.7828 -1.4746 0.8852 37 1 8.0428 -3.4209 2.1283 38 1 7.7394 -5.8646 2.1288 39 1 9.7209 -8.3953 0.8848 40 1 9.0370 -9.7773 -0.0040 41 1 9.7192 -8.3955 -0.8952 42 1 5.5749 -7.8986 1.5197 43 1 6.4228 -9.4639 1.5192 44 1 7.1063 -8.0818 2.4083 45 1 7.1018 -8.0822 -2.4139 46 1 6.4200 -9.4641 -1.5235 47 1 5.5722 -7.8989 -1.5226 48 1 7.7348 -5.8649 -2.1361 49 1 8.0287 -3.4202 -2.1366 50 1 6.2870 3.0238 -0.0017 51 1 4.7511 5.0736 0.7246 52 1 3.7890 5.3495 -2.0007 53 1 1.3125 4.5126 0.0026 54 1 0.2173 2.3118 0.0128 RHF calculation, no. of doubly occupied orbitals= 74 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6672430_9435856.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:54:58 Heat of formation + Delta-G solvation = -124.151197 kcal Electronic energy + Delta-G solvation = -35970.306357 eV Core-core repulsion = 31156.309856 eV Total energy + Delta-G solvation = -4813.996501 eV No. of doubly occupied orbitals = 74 Molecular weight (most abundant/longest-lived isotopes) = 414.155 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -43.88348 -41.72030 -40.69044 -40.02226 -39.13447 -37.89215 -37.03098 -33.82833 -33.20236 -32.02822 -31.93644 -31.22055 -29.46511 -28.76151 -28.30413 -28.27395 -27.65623 -26.33433 -25.34972 -24.12231 -23.54221 -22.42916 -22.12341 -21.89224 -20.10536 -19.20028 -18.63622 -18.47381 -18.19944 -17.85790 -17.44619 -17.39331 -16.96441 -16.50682 -16.24553 -16.05909 -15.95666 -15.84390 -15.27820 -14.98885 -14.71520 -14.59179 -14.42675 -14.34737 -14.22425 -14.21280 -14.06680 -13.88084 -13.72704 -13.62054 -13.53624 -13.43713 -13.34641 -13.16057 -13.12007 -12.97255 -12.79061 -12.50361 -12.34219 -12.28869 -12.20671 -12.09943 -12.09004 -11.83635 -11.62030 -11.13527 -10.94181 -10.81813 -10.76729 -10.42700 -9.99449 -9.85622 -9.75479 -9.09339 -0.90974 0.00503 0.00761 0.37386 0.47253 0.93466 1.16681 1.47427 1.48803 1.57403 1.59044 1.81363 1.95860 2.01420 2.07161 2.11639 2.31261 2.65130 2.85154 3.13938 3.34261 3.54475 3.58174 3.64008 3.68103 3.70831 3.79524 3.83242 4.01507 4.07732 4.15801 4.19927 4.25622 4.35746 4.37316 4.48408 4.50162 4.65680 4.71199 4.72255 4.78475 4.84399 4.84465 4.86704 4.88174 4.88833 4.89249 4.90459 4.93747 4.95316 5.10996 5.11851 5.27404 5.34418 5.50220 5.51064 5.53904 5.58818 5.67774 5.69688 6.06678 6.16023 6.26979 6.71737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.336 6.336 3 C 0.132 3.868 4 C 0.025 3.975 5 O -0.182 6.182 6 C -0.029 4.029 7 C 0.555 3.445 8 O -0.495 6.495 9 O -0.346 6.346 10 C 0.106 3.894 11 C -0.110 4.110 12 C -0.119 4.119 13 C -0.102 4.102 14 C -0.371 4.371 15 Si 1.127 2.873 16 C -0.461 4.461 17 C -0.462 4.462 18 C -0.463 4.463 19 C -0.103 4.103 20 C -0.120 4.120 21 C -0.079 4.079 22 C -0.098 4.098 23 C -0.096 4.096 24 C -0.087 4.087 25 O -0.550 6.550 26 Si 0.989 3.011 27 H -0.253 1.253 28 H -0.275 1.275 29 H -0.232 1.232 30 C -0.098 4.098 31 C -0.158 4.158 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.143 0.857 49 H 0.128 0.872 50 H 0.191 0.809 51 H 0.119 0.881 52 H 0.390 0.610 53 H 0.164 0.836 54 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.210 -0.800 0.087 6.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.250 6.250 3 C 0.086 3.914 4 C -0.023 4.023 5 O -0.084 6.084 6 C -0.077 4.077 7 C 0.400 3.600 8 O -0.385 6.385 9 O -0.263 6.263 10 C 0.034 3.966 11 C -0.110 4.110 12 C -0.138 4.138 13 C -0.120 4.120 14 C -0.410 4.410 15 Si 1.314 2.686 16 C -0.567 4.567 17 C -0.570 4.570 18 C -0.570 4.570 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.098 4.098 22 C -0.099 4.099 23 C -0.097 4.097 24 C -0.196 4.196 25 O -0.358 6.358 26 Si 0.810 3.190 27 H -0.177 1.177 28 H -0.201 1.201 29 H -0.156 1.156 30 C -0.115 4.115 31 C -0.177 4.177 32 H 0.095 0.905 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.147 0.853 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.160 0.840 49 H 0.146 0.854 50 H 0.208 0.792 51 H 0.137 0.863 52 H 0.239 0.761 53 H 0.181 0.819 54 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.872 -0.422 0.631 5.921 hybrid contribution 0.174 -0.122 -0.379 0.434 sum -5.698 -0.544 0.252 5.729 Atomic orbital electron populations 1.23500 0.75208 1.06053 1.03252 1.86168 1.24460 1.25947 1.88445 1.18028 0.86125 0.86924 1.00299 1.19371 0.88373 0.87232 1.07318 1.84137 1.12796 1.35156 1.76298 1.20674 0.82697 0.91625 1.12669 1.19290 0.86305 0.81346 0.73106 1.90958 1.31621 1.69068 1.46807 1.86746 1.36806 1.19478 1.83230 1.22144 0.80942 0.88932 1.04576 1.19560 1.04031 0.92594 0.94813 1.21407 0.99208 0.95753 0.97387 1.21412 0.97559 0.93593 0.99455 1.28168 1.00046 1.19044 0.93757 0.77195 0.66075 0.59133 0.66210 1.26258 1.18010 1.07991 1.04486 1.26277 1.08799 1.06137 1.15751 1.26275 1.08825 1.06138 1.15731 1.21412 0.97575 0.93581 0.99455 1.21403 0.99214 0.95754 0.97405 1.23012 0.95904 0.93240 0.97682 1.19519 0.92102 0.92562 1.05684 1.19683 0.93317 0.94333 1.02338 1.25215 1.07588 0.97312 0.89464 1.86521 1.39255 1.93324 1.16669 0.85157 0.76648 0.76027 0.81130 1.17677 1.20071 1.15555 1.20913 0.93184 0.98800 0.98618 1.21400 1.01869 0.89510 1.04892 0.90496 0.86730 0.90496 0.89085 0.89043 0.85329 0.83938 0.91332 0.90525 0.91335 0.91429 0.90492 0.90854 0.90864 0.90492 0.91433 0.83954 0.85371 0.79199 0.86326 0.76078 0.81875 0.80159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.34 -1.78 10.50 -93.09 -0.98 -2.76 16 3 C 0.13 0.67 6.70 22.57 0.15 0.82 16 4 C 0.03 0.24 7.35 23.15 0.17 0.41 16 5 O -0.18 -2.43 10.60 -12.77 -0.14 -2.57 16 6 C -0.03 -0.31 7.11 23.97 0.17 -0.14 16 7 C 0.55 6.37 7.94 70.07 0.56 6.93 16 8 O -0.49 -6.65 16.62 19.57 0.33 -6.33 16 9 O -0.35 -3.81 10.22 -55.90 -0.57 -4.38 16 10 C 0.11 0.68 5.60 71.24 0.40 1.08 16 11 C -0.11 -0.70 5.52 -19.87 -0.11 -0.81 16 12 C -0.12 -0.59 9.70 22.27 0.22 -0.37 16 13 C -0.10 -0.23 9.29 22.27 0.21 -0.03 16 14 C -0.37 -0.31 4.59 22.27 0.10 -0.21 16 15 Si 1.13 -5.55 12.32 68.60 0.85 -4.71 16 16 C -0.46 1.51 8.65 113.37 0.98 2.49 16 17 C -0.46 1.64 8.53 113.37 0.97 2.61 16 18 C -0.46 1.63 8.53 113.37 0.97 2.60 16 19 C -0.10 -0.24 9.29 22.27 0.21 -0.03 16 20 C -0.12 -0.60 9.70 22.27 0.22 -0.38 16 21 C -0.08 -0.59 10.68 23.80 0.25 -0.33 16 22 C -0.10 -0.63 6.16 -20.24 -0.12 -0.75 16 23 C -0.10 -0.09 5.26 -19.86 -0.10 -0.20 16 24 C -0.09 0.14 2.70 71.24 0.19 0.33 16 25 O -0.55 0.03 12.88 -148.98 -1.92 -1.88 16 26 Si 0.99 -4.15 25.50 68.60 1.75 -2.40 16 27 H -0.25 0.80 7.11 99.48 0.71 1.51 16 28 H -0.28 -0.03 7.11 99.48 0.71 0.67 16 29 H -0.23 1.62 6.74 99.48 0.67 2.29 16 30 C -0.10 0.26 8.62 22.02 0.19 0.45 16 31 C -0.16 0.32 9.03 22.40 0.20 0.52 16 32 H 0.08 -0.66 7.67 -2.39 -0.02 -0.67 16 33 H 0.11 -0.83 8.14 -2.39 -0.02 -0.85 16 34 H 0.08 -0.65 7.64 -2.39 -0.02 -0.67 16 35 H 0.09 0.42 8.08 -2.39 -0.02 0.40 16 36 H 0.09 0.41 8.08 -2.39 -0.02 0.39 16 37 H 0.13 0.30 8.06 -2.91 -0.02 0.27 16 38 H 0.14 -0.34 7.43 -2.91 -0.02 -0.37 16 39 H 0.07 -0.18 7.96 -2.38 -0.02 -0.20 16 40 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 41 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 42 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 43 H 0.08 -0.32 7.96 -2.38 -0.02 -0.34 16 44 H 0.07 -0.29 7.69 -2.39 -0.02 -0.31 16 45 H 0.07 -0.29 7.69 -2.39 -0.02 -0.31 16 46 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 47 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 48 H 0.14 -0.33 7.43 -2.91 -0.02 -0.35 16 49 H 0.13 0.32 8.06 -2.91 -0.02 0.29 16 50 H 0.19 0.79 8.06 -2.91 -0.02 0.76 16 51 H 0.12 -0.25 7.96 -2.39 -0.02 -0.27 16 52 H 0.39 -2.77 8.70 -74.06 -0.64 -3.42 16 53 H 0.16 -1.35 4.84 -2.91 -0.01 -1.37 16 54 H 0.18 -1.66 6.26 -2.91 -0.02 -1.68 16 Total: 0.00 -21.69 457.89 7.25 -14.44 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: 1.01 Total: -5.46 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.92 Total: 16.05 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -3.28 Total: -17.92 kcal Atomic # 14 Polarization: -9.70 SS G_CDS: 2.59 Total: -7.11 kcal Total: -21.69 7.25 -14.44 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6672430_9435856.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.710 kcal (2) G-P(sol) polarization free energy of solvation -21.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds