Wall clock time and date at job start Sat Mar 6 2021 08:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 C 1.52999 * 109.46735 * 240.00535 * 2 1 3 5 5 O 1.45197 * 109.47503 * 120.00312 * 2 1 3 6 6 C 1.34642 * 116.99749 * 59.99667 * 5 2 1 7 7 O 1.21504 * 120.00187 * 0.02562 * 6 5 2 8 8 N 1.34779 * 119.99445 * 180.02562 * 6 5 2 9 9 C 1.46496 * 119.99390 * 180.02562 * 8 6 5 10 10 H 1.09000 * 112.91246 * 23.74616 * 9 8 6 11 11 C 1.53786 * 113.61518 * 154.99856 * 9 8 6 12 12 C 1.53781 * 87.17350 * 89.15486 * 11 9 8 13 13 H 1.08996 * 113.61580 * 270.76247 * 12 11 9 14 14 C 1.53003 * 113.61480 * 139.93948 * 12 11 9 15 15 O 1.45192 * 109.46942 * 175.00009 * 14 12 11 16 16 C 1.34799 * 116.99993 * 180.02562 * 15 14 12 17 17 O 1.21568 * 119.99859 * 359.97438 * 16 15 14 18 18 C 1.47030 * 120.00521 * 180.02562 * 16 15 14 19 19 C 1.36109 * 123.47298 * 0.02562 * 18 16 15 20 20 S 1.70447 * 110.80743 * 179.97438 * 19 18 16 21 21 C 1.75504 * 92.45542 * 0.02562 * 20 19 18 22 22 C 1.50691 * 124.69834 * 180.02562 * 21 20 19 23 23 O 1.42911 * 109.47156 * 119.98131 * 22 21 20 24 24 Si 1.86299 * 109.47306 * 359.97438 * 22 21 20 25 25 C 1.32742 * 110.59810 * 359.75593 * 21 20 19 26 26 C 1.53782 * 87.08260 * 25.39213 * 12 11 9 27 27 H 1.09005 * 109.46599 * 299.99813 * 1 2 3 28 28 H 1.08993 * 109.47218 * 59.99239 * 1 2 3 29 29 H 1.08990 * 109.47258 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47314 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47128 * 300.00671 * 3 2 1 32 32 H 1.09007 * 109.46749 * 60.00158 * 3 2 1 33 33 H 1.08997 * 109.47164 * 299.99536 * 4 2 1 34 34 H 1.08998 * 109.47768 * 60.00047 * 4 2 1 35 35 H 1.09006 * 109.47244 * 180.02562 * 4 2 1 36 36 H 0.97001 * 120.00492 * 359.97438 * 8 6 5 37 37 H 1.09002 * 113.61357 * 334.56403 * 11 9 8 38 38 H 1.09002 * 113.61608 * 203.74565 * 11 9 8 39 39 H 1.08994 * 109.47052 * 295.00030 * 14 12 11 40 40 H 1.09002 * 109.46569 * 54.99962 * 14 12 11 41 41 H 1.08001 * 124.59750 * 359.95572 * 19 18 16 42 42 H 1.08995 * 109.47413 * 239.97497 * 22 21 20 43 43 H 0.96702 * 113.99495 * 300.00345 * 23 22 21 44 44 H 1.48499 * 109.99712 * 179.97438 * 24 22 21 45 45 H 1.48499 * 110.00031 * 301.31700 * 24 22 21 46 46 H 1.07999 * 123.45683 * 180.21308 * 25 21 20 47 47 H 1.08997 * 113.61668 * 89.11298 * 26 12 11 48 48 H 1.08998 * 113.61674 * 219.93807 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5035 8 7 2.0673 -2.6655 2.4170 9 6 1.6741 -4.0669 2.5829 10 1 1.4213 -4.5512 1.6397 11 6 2.6472 -4.8811 3.4519 12 6 1.8065 -4.4482 4.6646 13 1 2.1362 -3.5107 5.1122 14 6 1.6014 -5.5594 5.6963 15 8 0.9021 -5.0247 6.8509 16 6 0.6415 -5.8807 7.8590 17 8 0.9890 -7.0426 7.7750 18 6 -0.0640 -5.4095 9.0599 19 6 -0.4858 -4.1263 9.2277 20 16 -1.2642 -3.9367 10.7322 21 6 -1.0207 -5.6224 11.1557 22 6 -1.4758 -6.2575 12.4443 23 8 -2.3868 -7.3202 12.1559 24 14 -2.3264 -4.9797 13.5000 25 6 -0.3853 -6.2617 10.1813 26 6 0.6276 -4.2868 3.6905 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1300 -0.7216 -1.2492 36 1 2.6270 -2.2367 3.0832 37 1 3.6623 -4.4839 3.4601 38 1 2.6138 -5.9531 3.2577 39 1 1.0113 -6.3617 5.2535 40 1 2.5704 -5.9499 6.0071 41 1 -0.3461 -3.3355 8.5056 42 1 -0.6126 -6.6541 12.9787 43 1 -3.1805 -7.0395 11.6801 44 1 -2.7805 -5.5937 14.7735 45 1 -1.3994 -3.8539 13.7805 46 1 -0.1318 -7.3107 10.2237 47 1 0.0409 -5.1962 3.5606 48 1 0.0113 -3.4107 3.8921 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6894092_15734084.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:24:32 Heat of formation + Delta-G solvation = -136.623096 kcal Electronic energy + Delta-G solvation = -30431.342432 eV Core-core repulsion = 25967.029872 eV Total energy + Delta-G solvation = -4464.312561 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.99592 -41.57832 -40.38054 -39.07822 -38.03588 -37.46900 -37.11181 -35.37544 -34.11639 -32.06448 -29.74163 -28.37877 -28.31079 -27.03870 -26.77856 -26.23932 -24.48796 -23.14743 -22.38986 -21.18179 -20.80387 -20.22832 -19.35982 -18.88003 -18.69319 -17.71634 -17.59919 -17.52319 -17.33514 -17.20144 -16.58919 -16.27197 -15.94498 -15.56298 -15.41591 -15.33038 -15.21206 -14.85390 -14.57948 -14.42135 -14.14958 -13.87726 -13.79436 -13.61322 -13.52120 -13.37030 -13.28434 -13.06394 -12.92961 -12.87949 -12.73156 -12.53123 -12.34714 -12.32897 -12.17826 -12.00124 -11.92305 -11.75470 -11.43215 -11.40351 -11.22079 -11.13842 -10.63609 -10.21385 -10.06136 -9.59383 -5.12018 -0.47704 0.29516 0.58282 0.63547 1.10654 1.19369 1.55140 1.60999 1.70737 1.90836 1.93663 3.08766 3.33878 3.36749 3.43929 3.62786 3.64624 3.72738 3.73482 3.79281 3.92489 3.93350 3.98950 4.17852 4.21107 4.35167 4.39594 4.41645 4.46896 4.59914 4.60342 4.67677 4.71071 4.72733 4.75567 4.81463 4.86820 4.87475 4.89294 4.95446 5.00173 5.03742 5.08724 5.15340 5.26115 5.27804 5.31908 5.45955 5.59575 6.35900 6.61278 6.68273 7.31179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.646 3.354 7 O -0.593 6.593 8 N -0.683 5.683 9 C 0.132 3.868 10 H 0.097 0.903 11 C -0.122 4.122 12 C -0.101 4.101 13 H 0.113 0.887 14 C 0.073 3.927 15 O -0.349 6.349 16 C 0.528 3.472 17 O -0.542 6.542 18 C -0.182 4.182 19 C -0.164 4.164 20 S 0.268 5.732 21 C -0.249 4.249 22 C -0.036 4.036 23 O -0.552 6.552 24 Si 0.736 3.264 25 C -0.069 4.069 26 C -0.145 4.145 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.417 0.583 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.201 0.799 42 H 0.118 0.882 43 H 0.397 0.603 44 H -0.272 1.272 45 H -0.253 1.253 46 H 0.140 0.860 47 H 0.098 0.902 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 6.728 0.917 6.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.283 6.283 6 C 0.400 3.600 7 O -0.483 6.483 8 N -0.342 5.342 9 C 0.028 3.972 10 H 0.115 0.885 11 C -0.160 4.160 12 C -0.119 4.119 13 H 0.131 0.869 14 C 0.000 4.000 15 O -0.265 6.265 16 C 0.373 3.627 17 O -0.434 6.434 18 C -0.198 4.198 19 C -0.302 4.302 20 S 0.534 5.466 21 C -0.366 4.366 22 C -0.148 4.148 23 O -0.360 6.360 24 Si 0.638 3.362 25 C -0.098 4.098 26 C -0.183 4.183 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.255 0.745 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.218 0.782 42 H 0.135 0.865 43 H 0.248 0.752 44 H -0.197 1.197 45 H -0.178 1.178 46 H 0.158 0.842 47 H 0.117 0.883 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.620 7.526 2.180 8.001 hybrid contribution 1.546 -1.930 -0.897 2.631 sum -0.074 5.595 1.284 5.741 Atomic orbital electron populations 1.22469 0.94013 1.03684 1.03540 1.22361 0.94483 0.92587 0.81475 1.21893 1.02465 0.90833 1.04271 1.22478 1.01655 1.02251 0.97376 1.86312 1.71528 1.23176 1.47293 1.18310 0.78569 0.80810 0.82327 1.90909 1.42149 1.70902 1.44388 1.44345 1.54906 1.11891 1.23077 1.21832 0.96839 0.79245 0.99305 0.88537 1.23335 0.98891 1.01757 0.91986 1.22661 0.97908 0.98840 0.92532 0.86917 1.23307 0.96566 0.97128 0.82993 1.86529 1.70477 1.42083 1.27443 1.20710 0.75866 0.83283 0.82805 1.90861 1.51533 1.20017 1.80985 1.19376 1.10293 0.94830 0.95265 1.26355 0.99950 1.00031 1.03911 1.82992 1.51435 1.04996 1.07176 1.24911 1.09769 0.99297 1.02620 1.24691 0.96948 0.97260 0.95867 1.86508 1.35092 1.34402 1.79994 0.94162 0.84676 0.76562 0.80810 1.20914 0.97328 1.00518 0.91009 1.23594 0.96678 1.03213 0.94850 0.91881 0.89483 0.91815 0.91170 0.88332 0.91124 0.91797 0.89475 0.91917 0.74542 0.88634 0.86844 0.90865 0.90733 0.78183 0.86524 0.75235 1.19737 1.17802 0.84188 0.88338 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.49 8.37 71.98 0.60 0.11 16 2 C 0.13 0.30 1.13 -10.79 -0.01 0.29 16 3 C -0.14 0.37 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.74 9.94 -55.52 -0.55 -2.29 16 6 C 0.65 3.83 8.06 129.79 1.05 4.88 16 7 O -0.59 -6.82 11.48 19.83 0.23 -6.59 16 8 N -0.68 0.44 5.27 -567.31 -2.99 -2.55 16 9 C 0.13 -0.28 4.33 45.58 0.20 -0.08 16 10 H 0.10 0.15 7.47 -2.39 -0.02 0.13 16 11 C -0.12 0.81 7.38 31.12 0.23 1.04 16 12 C -0.10 0.51 3.90 -10.27 -0.04 0.47 16 13 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 14 C 0.07 -0.04 5.31 71.98 0.38 0.35 16 15 O -0.35 -1.06 9.87 -57.11 -0.56 -1.62 16 16 C 0.53 3.90 7.92 70.13 0.56 4.45 16 17 O -0.54 -7.50 16.59 19.62 0.33 -7.17 16 18 C -0.18 -0.64 5.98 -19.88 -0.12 -0.76 16 19 C -0.16 0.43 10.56 67.32 0.71 1.15 16 20 S 0.27 -1.44 20.18 -56.49 -1.14 -2.58 16 21 C -0.25 0.23 5.68 24.51 0.14 0.37 16 22 C -0.04 0.06 2.95 71.23 0.21 0.27 16 23 O -0.55 0.14 12.85 -148.98 -1.91 -1.77 16 24 Si 0.74 -3.35 30.91 68.60 2.12 -1.23 16 25 C -0.07 -0.26 9.91 22.68 0.22 -0.04 16 26 C -0.14 0.41 7.44 31.18 0.23 0.64 16 27 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 28 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 29 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 30 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 33 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 34 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.42 -2.18 8.81 -92.71 -0.82 -3.00 16 37 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.11 -0.90 8.10 -2.39 -0.02 -0.92 16 39 H 0.07 0.02 7.84 -2.39 -0.02 0.00 16 40 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.20 -1.40 8.02 -2.91 -0.02 -1.42 16 42 H 0.12 -0.08 7.96 -2.39 -0.02 -0.10 16 43 H 0.40 -3.40 8.70 -74.06 -0.64 -4.05 16 44 H -0.27 -0.62 7.11 99.48 0.71 0.09 16 45 H -0.25 0.41 7.11 99.48 0.71 1.12 16 46 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 47 H 0.10 -0.30 7.90 -2.39 -0.02 -0.32 16 48 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: 0.00 -21.45 411.60 0.68 -20.76 By element: Atomic # 1 Polarization: -8.77 SS G_CDS: -0.43 Total: -9.20 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: 5.60 Total: 14.24 kcal Atomic # 7 Polarization: 0.44 SS G_CDS: -2.99 Total: -2.55 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -2.48 Total: -19.45 kcal Atomic # 14 Polarization: -3.35 SS G_CDS: 2.12 Total: -1.23 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -1.14 Total: -2.58 kcal Total: -21.45 0.68 -20.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_15734084.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.859 kcal (2) G-P(sol) polarization free energy of solvation -21.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds