Wall clock time and date at job start Sat Mar 6 2021 08:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46715 * 2 1 4 4 C 1.52995 * 109.47035 * 240.00179 * 2 1 3 5 5 O 1.45198 * 109.46919 * 119.99864 * 2 1 3 6 6 C 1.34639 * 117.00014 * 60.00914 * 5 2 1 7 7 O 1.21510 * 119.99686 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99744 * 179.97438 * 6 5 2 9 9 C 1.46503 * 119.99675 * 179.97438 * 8 6 5 10 10 H 1.09004 * 112.90755 * 23.74576 * 9 8 6 11 11 C 1.53775 * 113.61366 * 154.99609 * 9 8 6 12 12 C 1.53778 * 87.08012 * 139.98222 * 11 9 8 13 13 H 1.08995 * 113.61373 * 89.20405 * 12 11 9 14 14 C 1.53009 * 113.61228 * 220.02136 * 12 11 9 15 15 O 1.45200 * 109.46787 * 185.00023 * 14 12 11 16 16 C 1.34798 * 116.99781 * 180.02562 * 15 14 12 17 17 O 1.21559 * 120.00257 * 359.97438 * 16 15 14 18 18 C 1.47035 * 119.99745 * 180.02562 * 16 15 14 19 19 C 1.36105 * 123.47693 * 359.97438 * 18 16 15 20 20 S 1.70451 * 110.80200 * 179.76352 * 19 18 16 21 21 C 1.75499 * 92.45863 * 0.30925 * 20 19 18 22 22 C 1.50699 * 124.69885 * 179.97438 * 21 20 19 23 23 O 1.42907 * 109.46603 * 244.70027 * 22 21 20 24 24 Si 1.86298 * 109.47032 * 4.69331 * 22 21 20 25 25 C 1.32741 * 110.59708 * 359.68745 * 21 20 19 26 26 C 1.53779 * 113.61320 * 252.49677 * 9 8 6 27 27 H 1.08998 * 109.47541 * 299.99880 * 1 2 3 28 28 H 1.09005 * 109.47493 * 60.00393 * 1 2 3 29 29 H 1.09010 * 109.47121 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46583 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47083 * 299.99657 * 3 2 1 32 32 H 1.08997 * 109.47196 * 60.00321 * 3 2 1 33 33 H 1.09000 * 109.47733 * 299.99721 * 4 2 1 34 34 H 1.08999 * 109.47610 * 59.99824 * 4 2 1 35 35 H 1.09003 * 109.47114 * 179.97438 * 4 2 1 36 36 H 0.96994 * 120.00136 * 359.97438 * 8 6 5 37 37 H 1.09003 * 113.61622 * 25.43317 * 11 9 8 38 38 H 1.09000 * 113.69364 * 254.53862 * 11 9 8 39 39 H 1.08991 * 109.47390 * 65.00186 * 14 12 11 40 40 H 1.09001 * 109.47402 * 304.99742 * 14 12 11 41 41 H 1.07996 * 124.59529 * 359.97051 * 19 18 16 42 42 H 1.08996 * 109.47117 * 124.69940 * 22 21 20 43 43 H 0.96697 * 114.00527 * 59.99993 * 23 22 21 44 44 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 45 45 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 46 46 H 1.08000 * 123.45364 * 180.26122 * 25 21 20 47 47 H 1.08995 * 113.61539 * 105.47642 * 26 9 8 48 48 H 1.08995 * 113.61682 * 334.56352 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9511 -2.5095 0.5039 8 7 2.0681 -2.6657 2.4166 9 6 1.6741 -4.0669 2.5831 10 1 1.4199 -4.5510 1.6401 11 6 2.6477 -4.8816 3.4510 12 6 1.4104 -5.5543 4.0685 13 1 1.0850 -6.4459 3.5326 14 6 1.5230 -5.7765 5.5782 15 8 0.3658 -6.5185 6.0458 16 6 0.3100 -6.7988 7.3631 17 8 1.2044 -6.4333 8.1008 18 6 -0.8322 -7.5476 7.9077 19 6 -1.8705 -7.9907 7.1474 20 16 -3.0093 -8.8233 8.1042 21 6 -2.0784 -8.5666 9.5696 22 6 -2.4803 -9.0541 10.9378 23 8 -2.7264 -7.9333 11.7894 24 14 -4.0282 -10.0817 10.8008 25 6 -0.9681 -7.8888 9.3049 26 6 0.6285 -4.2856 3.6893 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0278 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7208 -1.2495 36 1 2.6282 -2.2370 3.0825 37 1 3.2139 -4.2756 4.1583 38 1 3.2768 -5.5646 2.8802 39 1 1.5656 -4.8126 6.0851 40 1 2.4293 -6.3417 5.7957 41 1 -1.9591 -7.8386 6.0819 42 1 -1.6777 -9.6603 11.3578 43 1 -3.4303 -7.3486 11.4767 44 1 -3.7948 -11.2330 9.8924 45 1 -4.4354 -10.5680 12.1436 46 1 -0.2408 -7.6205 10.0568 47 1 -0.3731 -4.4872 3.3096 48 1 0.6428 -3.5167 4.4617 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6894092_15734238.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:24:36 Heat of formation + Delta-G solvation = -138.780855 kcal Electronic energy + Delta-G solvation = -30257.406035 eV Core-core repulsion = 25792.999906 eV Total energy + Delta-G solvation = -4464.406128 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.94719 -41.58452 -40.32207 -39.06352 -38.06264 -37.47125 -37.11712 -35.41707 -34.24785 -32.07380 -29.72128 -28.38163 -28.31766 -27.02037 -26.78414 -26.23219 -24.62611 -22.64329 -22.26801 -21.44071 -20.84303 -20.41791 -19.14266 -18.90801 -18.68708 -17.94973 -17.58046 -17.52728 -17.31682 -17.18410 -16.52809 -16.28764 -16.24281 -15.60734 -15.41748 -15.37050 -14.96178 -14.87173 -14.52106 -14.25874 -14.14807 -13.86205 -13.78009 -13.52441 -13.49980 -13.37777 -13.19944 -13.01873 -12.91310 -12.88273 -12.70720 -12.54397 -12.46656 -12.33189 -12.26207 -12.09513 -11.94156 -11.80606 -11.45935 -11.40876 -11.29928 -11.11980 -10.60806 -10.17632 -10.08221 -9.58363 -5.13366 -0.47296 0.30388 0.58210 0.64104 1.13808 1.19826 1.56135 1.61580 1.71678 1.91064 1.93326 3.12144 3.33492 3.37255 3.43796 3.63930 3.66349 3.71759 3.72866 3.78781 3.89713 3.92992 3.98675 4.15130 4.21544 4.23182 4.39745 4.42154 4.49415 4.59789 4.61142 4.67673 4.68344 4.74964 4.75058 4.77574 4.84490 4.86073 4.90833 4.93374 4.99900 5.04491 5.09348 5.17146 5.25601 5.27234 5.31688 5.48137 5.57853 6.37766 6.61064 6.68842 7.31861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.643 3.357 7 O -0.594 6.594 8 N -0.691 5.691 9 C 0.136 3.864 10 H 0.110 0.890 11 C -0.123 4.123 12 C -0.098 4.098 13 H 0.116 0.884 14 C 0.077 3.923 15 O -0.349 6.349 16 C 0.529 3.471 17 O -0.542 6.542 18 C -0.183 4.183 19 C -0.164 4.164 20 S 0.269 5.731 21 C -0.250 4.250 22 C -0.035 4.035 23 O -0.552 6.552 24 Si 0.739 3.261 25 C -0.070 4.070 26 C -0.146 4.146 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.202 0.798 42 H 0.117 0.883 43 H 0.397 0.603 44 H -0.256 1.256 45 H -0.272 1.272 46 H 0.140 0.860 47 H 0.073 0.927 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.345 0.484 -2.260 4.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.397 3.603 7 O -0.485 6.485 8 N -0.350 5.350 9 C 0.033 3.967 10 H 0.128 0.872 11 C -0.161 4.161 12 C -0.117 4.117 13 H 0.134 0.866 14 C 0.003 3.997 15 O -0.265 6.265 16 C 0.374 3.626 17 O -0.434 6.434 18 C -0.199 4.199 19 C -0.302 4.302 20 S 0.536 5.464 21 C -0.367 4.367 22 C -0.147 4.147 23 O -0.360 6.360 24 Si 0.640 3.360 25 C -0.098 4.098 26 C -0.184 4.184 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.219 0.781 42 H 0.135 0.865 43 H 0.248 0.752 44 H -0.181 1.181 45 H -0.197 1.197 46 H 0.158 0.842 47 H 0.092 0.908 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.668 -1.343 -2.391 5.414 hybrid contribution 2.601 1.099 0.682 2.905 sum -2.067 -0.244 -1.709 2.694 Atomic orbital electron populations 1.22472 0.94028 1.03713 1.03481 1.22351 0.94477 0.92574 0.81546 1.21894 1.02450 0.90932 1.04229 1.22471 1.01628 1.02271 0.97326 1.86315 1.71552 1.23387 1.47275 1.18427 0.78635 0.80773 0.82482 1.90899 1.42198 1.70927 1.44430 1.44784 1.54898 1.12294 1.23003 1.22547 0.96630 0.78576 0.98975 0.87201 1.23366 0.96011 0.98437 0.98265 1.22328 0.98302 0.98898 0.92176 0.86605 1.23251 0.85990 0.95761 0.94677 1.86531 1.46946 1.68651 1.24405 1.20701 0.85024 0.76319 0.80560 1.90856 1.40070 1.52134 1.60324 1.19374 0.96851 1.09568 0.94078 1.26370 0.97576 0.99503 1.06780 1.82940 1.20307 1.48862 0.94316 1.24910 1.00911 1.09416 1.01443 1.24685 1.09833 0.94752 0.85454 1.86509 1.61321 1.39219 1.48936 0.94197 0.79186 0.80756 0.81829 1.20928 0.97655 0.97502 0.93716 1.23614 0.99163 0.97292 0.98372 0.92018 0.89458 0.91733 0.91198 0.88298 0.91242 0.91724 0.89467 0.91954 0.74604 0.87630 0.88537 0.90862 0.90623 0.78142 0.86533 0.75227 1.18097 1.19722 0.84196 0.90817 0.89159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 2 C 0.13 0.37 1.13 -10.79 -0.01 0.36 16 3 C -0.14 0.27 8.85 71.98 0.64 0.91 16 4 C -0.18 -0.56 8.37 71.98 0.60 0.04 16 5 O -0.37 -2.03 9.94 -55.48 -0.55 -2.58 16 6 C 0.64 4.13 8.06 129.79 1.05 5.17 16 7 O -0.59 -6.87 11.48 19.81 0.23 -6.64 16 8 N -0.69 0.10 5.36 -567.60 -3.04 -2.95 16 9 C 0.14 -0.30 4.24 45.51 0.19 -0.11 16 10 H 0.11 0.10 7.47 -2.39 -0.02 0.08 16 11 C -0.12 0.81 7.39 31.12 0.23 1.04 16 12 C -0.10 0.45 4.02 -10.26 -0.04 0.41 16 13 H 0.12 -0.63 8.14 -2.39 -0.02 -0.65 16 14 C 0.08 -0.04 5.31 71.99 0.38 0.34 16 15 O -0.35 -1.09 9.87 -57.10 -0.56 -1.66 16 16 C 0.53 3.90 7.92 70.13 0.56 4.46 16 17 O -0.54 -7.42 16.59 19.64 0.33 -7.09 16 18 C -0.18 -0.66 5.98 -19.88 -0.12 -0.78 16 19 C -0.16 0.41 10.56 67.32 0.71 1.13 16 20 S 0.27 -1.45 20.19 -56.49 -1.14 -2.59 16 21 C -0.25 0.22 5.65 24.51 0.14 0.36 16 22 C -0.04 0.06 2.94 71.24 0.21 0.27 16 23 O -0.55 0.19 12.88 -148.98 -1.92 -1.73 16 24 Si 0.74 -3.27 30.92 68.60 2.12 -1.15 16 25 C -0.07 -0.27 9.95 22.68 0.23 -0.04 16 26 C -0.15 0.42 7.43 31.12 0.23 0.65 16 27 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 29 H 0.06 0.54 5.88 -2.38 -0.01 0.53 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 34 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.42 -1.88 8.84 -92.71 -0.82 -2.70 16 37 H 0.11 -0.91 8.08 -2.39 -0.02 -0.93 16 38 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H 0.07 -0.01 7.84 -2.39 -0.02 -0.03 16 40 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.20 -1.37 8.02 -2.91 -0.02 -1.40 16 42 H 0.12 -0.07 7.96 -2.39 -0.02 -0.09 16 43 H 0.40 -3.49 8.70 -74.06 -0.64 -4.13 16 44 H -0.26 0.30 7.11 99.48 0.71 1.01 16 45 H -0.27 -0.63 7.11 99.48 0.71 0.08 16 46 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 47 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.09 -0.26 7.90 -2.39 -0.02 -0.28 16 Total: 0.00 -21.46 411.79 0.62 -20.84 By element: Atomic # 1 Polarization: -8.26 SS G_CDS: -0.43 Total: -8.69 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 5.59 Total: 14.24 kcal Atomic # 7 Polarization: 0.10 SS G_CDS: -3.04 Total: -2.95 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -2.48 Total: -19.70 kcal Atomic # 14 Polarization: -3.27 SS G_CDS: 2.12 Total: -1.15 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -1.14 Total: -2.59 kcal Total: -21.46 0.62 -20.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_15734238.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.936 kcal (2) G-P(sol) polarization free energy of solvation -21.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds