Wall clock time and date at job start Sat Mar 6 2021 08:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42895 * 1 3 3 Si 1.86307 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47333 * 120.00273 * 2 1 3 5 5 C 1.32731 * 124.70192 * 65.27951 * 4 2 1 6 6 C 1.44463 * 113.09014 * 180.14980 * 5 4 2 7 7 C 1.47037 * 123.47808 * 179.83315 * 6 5 4 8 8 O 1.21553 * 119.99708 * 359.73478 * 7 6 5 9 9 O 1.34798 * 120.00036 * 179.72406 * 7 6 5 10 10 C 1.45200 * 116.99929 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47111 * 180.02562 * 10 9 7 12 12 H 1.08992 * 109.47514 * 305.00709 * 11 10 9 13 13 C 1.53002 * 109.46637 * 65.00579 * 11 10 9 14 14 C 1.52997 * 109.46817 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47452 * 300.00239 * 14 13 11 16 16 H 1.09002 * 109.46935 * 300.00125 * 15 14 13 17 17 O 1.42900 * 109.47304 * 180.02562 * 15 14 13 18 18 C 1.52999 * 109.47159 * 59.99536 * 15 14 13 19 19 C 1.52997 * 109.47317 * 300.00546 * 18 15 14 20 20 C 1.36110 * 113.04984 * 359.56725 * 6 5 4 21 21 S 1.70447 * 110.80231 * 0.23001 * 20 6 5 22 22 H 0.96703 * 114.00174 * 299.99675 * 1 2 3 23 23 H 1.08997 * 109.47432 * 240.00565 * 2 1 3 24 24 H 1.48497 * 110.00124 * 178.68029 * 3 2 1 25 25 H 1.48502 * 109.99788 * 300.00510 * 3 2 1 26 26 H 1.08002 * 123.45531 * 359.94715 * 5 4 2 27 27 H 1.09008 * 109.46784 * 60.00745 * 10 9 7 28 28 H 1.09000 * 109.47295 * 300.00997 * 10 9 7 29 29 H 1.08993 * 109.47662 * 299.99908 * 13 11 10 30 30 H 1.09002 * 109.47075 * 60.00414 * 13 11 10 31 31 H 1.09002 * 109.47153 * 60.00231 * 14 13 11 32 32 H 1.09001 * 109.47289 * 180.02562 * 14 13 11 33 33 H 0.96700 * 113.99696 * 179.97438 * 17 15 14 34 34 H 1.08996 * 109.46929 * 179.97438 * 18 15 14 35 35 H 1.09002 * 109.46716 * 60.00455 * 18 15 14 36 36 H 1.09002 * 109.47153 * 299.99641 * 19 18 15 37 37 H 1.09001 * 109.46832 * 179.97438 * 19 18 15 38 38 H 1.08000 * 124.59916 * 180.20994 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.7530 -2.0012 1.4835 6 6 2.3364 -2.4185 2.7374 7 6 2.2706 -3.7975 3.2435 8 8 1.6984 -4.6547 2.5990 9 8 2.8450 -4.1111 4.4219 10 6 2.7403 -5.4916 4.8596 11 6 3.4458 -5.6543 6.2074 12 1 4.4737 -5.3014 6.1244 13 6 2.7099 -4.8358 7.2702 14 6 3.4150 -4.9990 8.6182 15 6 3.4131 -6.4754 9.0195 16 1 2.3850 -6.8281 9.1022 17 8 4.0711 -6.6277 10.2788 18 6 4.1489 -7.2938 7.9567 19 6 3.4437 -7.1307 6.6087 20 6 2.9583 -1.4048 3.3995 21 16 2.8399 0.0526 2.5236 22 1 -0.3934 0.4417 0.7651 23 1 1.7923 -0.5137 -0.8900 24 1 3.5345 1.7704 0.0321 25 1 1.5613 2.4679 -1.2085 26 1 1.2231 -2.6700 0.8215 27 1 3.2098 -6.1431 4.1224 28 1 1.6893 -5.7606 4.9651 29 1 2.7109 -3.7841 6.9842 30 1 1.6820 -5.1888 7.3533 31 1 4.4431 -4.6463 8.5354 32 1 2.8905 -4.4163 9.3755 33 1 4.1068 -7.5404 10.5961 34 1 4.1478 -8.3456 8.2428 35 1 5.1770 -6.9412 7.8739 36 1 2.4157 -7.4834 6.6914 37 1 3.9683 -7.7134 5.8515 38 1 3.4586 -1.5097 4.3508 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6894092_16737258.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:50:22 Heat of formation + Delta-G solvation = -148.105022 kcal Electronic energy + Delta-G solvation = -21648.135604 eV Core-core repulsion = 18162.272250 eV Total energy + Delta-G solvation = -3485.863354 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.63917 -40.11178 -39.07150 -37.83205 -37.16558 -36.55838 -32.35553 -31.87474 -31.55737 -27.32140 -27.01161 -25.54294 -23.80832 -22.53858 -22.17404 -20.98563 -20.61257 -18.89197 -18.70001 -18.21893 -17.63108 -17.56452 -17.31939 -16.47078 -16.27620 -15.61818 -15.47587 -15.27124 -15.06019 -14.66348 -14.46027 -14.13727 -13.97150 -13.90526 -13.68043 -13.60817 -13.27383 -13.12911 -12.70789 -12.38180 -12.32738 -12.14513 -12.09912 -11.93671 -11.82183 -11.53719 -11.45100 -11.10904 -10.72063 -10.60515 -10.08735 -9.58430 -5.13388 -0.47839 0.30172 0.57681 0.63649 1.18786 1.54265 1.61293 1.91034 1.92711 3.20596 3.37522 3.55620 3.63050 3.65961 3.66411 3.91476 3.95952 3.97808 4.15800 4.19649 4.26757 4.34973 4.37000 4.40260 4.46339 4.49192 4.52568 4.67674 4.79844 4.90058 4.95187 5.01619 5.05575 5.09487 5.13800 5.17807 5.27022 5.30031 5.43538 6.59706 6.69185 6.86350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.036 4.036 3 Si 0.741 3.259 4 C -0.250 4.250 5 C -0.070 4.070 6 C -0.182 4.182 7 C 0.528 3.472 8 O -0.543 6.543 9 O -0.347 6.347 10 C 0.070 3.930 11 C -0.081 4.081 12 H 0.085 0.915 13 C -0.107 4.107 14 C -0.113 4.113 15 C 0.099 3.901 16 H 0.060 0.940 17 O -0.590 6.590 18 C -0.144 4.144 19 C -0.109 4.109 20 C -0.164 4.164 21 S 0.271 5.729 22 H 0.397 0.603 23 H 0.117 0.883 24 H -0.256 1.256 25 H -0.273 1.273 26 H 0.140 0.860 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.393 0.607 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 3.116 3.565 4.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.147 4.147 3 Si 0.642 3.358 4 C -0.366 4.366 5 C -0.099 4.099 6 C -0.198 4.198 7 C 0.373 3.627 8 O -0.435 6.435 9 O -0.264 6.264 10 C -0.003 4.003 11 C -0.099 4.099 12 H 0.103 0.897 13 C -0.144 4.144 14 C -0.150 4.150 15 C 0.041 3.959 16 H 0.078 0.922 17 O -0.399 6.399 18 C -0.182 4.182 19 C -0.147 4.147 20 C -0.302 4.302 21 S 0.538 5.462 22 H 0.248 0.752 23 H 0.134 0.866 24 H -0.181 1.181 25 H -0.198 1.198 26 H 0.157 0.843 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.243 0.757 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.121 5.237 2.632 6.233 hybrid contribution -0.635 -3.251 -0.538 3.356 sum 1.487 1.986 2.094 3.246 Atomic orbital electron populations 1.86509 1.16856 1.82204 1.50402 1.24690 0.85254 1.10184 0.94621 0.94190 0.79451 0.74191 0.87944 1.24909 1.09666 0.98075 1.03982 1.20919 0.98782 0.95288 0.94863 1.19351 1.10546 0.91277 0.98595 1.20735 0.74619 0.88529 0.78785 1.90854 1.42755 1.51144 1.58711 1.86514 1.70678 1.33005 1.36174 1.23300 1.01955 0.78432 0.96646 1.21221 1.00440 0.96976 0.91273 0.89689 1.21505 0.99138 1.00923 0.92843 1.21470 1.01558 0.94977 0.97014 1.21918 0.95114 0.96121 0.82750 0.92158 1.86485 1.81183 1.34629 1.37574 1.22183 1.00143 1.01004 0.94845 1.21456 1.02036 0.94112 0.97088 1.26368 1.00637 0.97887 1.05356 1.82925 1.47767 1.07149 1.08362 0.75213 0.86585 1.18116 1.19806 0.84268 0.91145 0.91054 0.90541 0.91329 0.91745 0.91573 0.75703 0.90153 0.91543 0.90711 0.90499 0.78157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.18 12.88 -148.98 -1.92 -1.74 16 2 C -0.04 0.06 2.94 71.24 0.21 0.27 16 3 Si 0.74 -3.30 30.92 68.60 2.12 -1.18 16 4 C -0.25 0.20 5.65 24.51 0.14 0.34 16 5 C -0.07 -0.29 9.95 22.68 0.23 -0.06 16 6 C -0.18 -0.71 5.98 -19.88 -0.12 -0.83 16 7 C 0.53 4.25 7.92 70.13 0.56 4.80 16 8 O -0.54 -7.92 16.59 19.66 0.33 -7.59 16 9 O -0.35 -1.38 9.42 -57.10 -0.54 -1.92 16 10 C 0.07 0.10 4.85 71.98 0.35 0.45 16 11 C -0.08 0.18 2.44 -10.79 -0.03 0.15 16 12 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 13 C -0.11 0.22 5.10 30.59 0.16 0.38 16 14 C -0.11 0.04 5.57 30.60 0.17 0.21 16 15 C 0.10 -0.11 3.47 30.60 0.11 0.00 16 16 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 17 O -0.59 -0.92 13.32 -148.98 -1.98 -2.91 16 18 C -0.14 0.50 5.55 30.59 0.17 0.67 16 19 C -0.11 0.43 5.20 30.59 0.16 0.59 16 20 C -0.16 0.40 10.56 67.32 0.71 1.11 16 21 S 0.27 -1.47 20.19 -56.49 -1.14 -2.61 16 22 H 0.40 -3.50 8.70 -74.06 -0.64 -4.15 16 23 H 0.12 -0.05 7.96 -2.39 -0.02 -0.07 16 24 H -0.26 0.31 7.11 99.48 0.71 1.01 16 25 H -0.27 -0.64 7.11 99.48 0.71 0.07 16 26 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 27 H 0.07 0.14 8.14 -2.38 -0.02 0.12 16 28 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.08 -0.13 7.82 -2.39 -0.02 -0.15 16 30 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.39 -2.50 9.08 -74.06 -0.67 -3.18 16 34 H 0.08 -0.45 8.14 -2.39 -0.02 -0.46 16 35 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 36 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.08 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.20 -1.36 8.02 -2.91 -0.02 -1.38 16 Total: 0.00 -17.77 331.90 -0.53 -18.30 By element: Atomic # 1 Polarization: -8.22 SS G_CDS: -0.20 Total: -8.43 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 2.81 Total: 8.08 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -4.11 Total: -14.16 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.12 Total: -1.18 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -1.14 Total: -2.61 kcal Total: -17.77 -0.53 -18.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_16737258.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.806 kcal (2) G-P(sol) polarization free energy of solvation -17.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds