Wall clock time and date at job start Sat Mar 6 2021 08:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46967 * 2 1 4 4 C 1.53004 * 109.47215 * 240.00405 * 2 1 3 5 5 Si 1.86295 * 109.47179 * 120.00097 * 2 1 3 6 6 C 1.86297 * 109.47300 * 300.00081 * 5 2 1 7 7 C 1.86302 * 109.47237 * 180.02562 * 5 2 1 8 8 O 1.63095 * 109.46953 * 60.00083 * 5 2 1 9 9 C 1.42907 * 114.00047 * 179.97438 * 8 5 2 10 10 C 1.53003 * 109.47325 * 179.97438 * 9 8 5 11 11 O 1.42901 * 109.46429 * 65.00746 * 10 9 8 12 12 C 1.42899 * 113.99649 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47405 * 179.97438 * 12 11 10 14 14 O 1.45198 * 109.46884 * 64.99626 * 13 12 11 15 15 C 1.34797 * 117.00118 * 179.97438 * 14 13 12 16 16 O 1.21563 * 119.99949 * 0.02562 * 15 14 13 17 17 C 1.47031 * 120.00367 * 180.02562 * 15 14 13 18 18 C 1.36112 * 123.47289 * 0.02740 * 17 15 14 19 19 S 1.70446 * 110.80405 * 179.97438 * 18 17 15 20 20 C 1.75497 * 92.45806 * 0.02562 * 19 18 17 21 21 C 1.50698 * 124.70279 * 179.97438 * 20 19 18 22 22 O 1.42905 * 109.47378 * 120.02086 * 21 20 19 23 23 Si 1.86300 * 109.46878 * 0.02562 * 21 20 19 24 24 H 1.48498 * 109.47297 * 60.00105 * 23 21 20 25 25 H 1.48507 * 109.47171 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47185 * 299.99890 * 23 21 20 27 27 C 1.32747 * 110.59820 * 359.71158 * 20 19 18 28 28 H 1.08999 * 109.47148 * 299.99729 * 1 2 3 29 29 H 1.09002 * 109.46857 * 60.00007 * 1 2 3 30 30 H 1.08997 * 109.46473 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47060 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47294 * 300.00259 * 3 2 1 33 33 H 1.09007 * 109.46816 * 59.99822 * 3 2 1 34 34 H 1.08998 * 109.46969 * 299.99762 * 4 2 1 35 35 H 1.09003 * 109.47109 * 59.99703 * 4 2 1 36 36 H 1.09005 * 109.46879 * 179.97438 * 4 2 1 37 37 H 1.09002 * 109.47546 * 179.97438 * 6 5 2 38 38 H 1.08997 * 109.47531 * 300.00429 * 6 5 2 39 39 H 1.09001 * 109.47051 * 59.99769 * 6 5 2 40 40 H 1.08999 * 109.46826 * 300.00012 * 7 5 2 41 41 H 1.08998 * 109.47222 * 59.99880 * 7 5 2 42 42 H 1.08994 * 109.47395 * 180.02562 * 7 5 2 43 43 H 1.09005 * 109.46610 * 60.00621 * 9 8 5 44 44 H 1.08995 * 109.47386 * 300.00783 * 9 8 5 45 45 H 1.08990 * 109.47090 * 305.00772 * 10 9 8 46 46 H 1.08992 * 109.46809 * 185.00065 * 10 9 8 47 47 H 1.09002 * 109.47445 * 59.99875 * 12 11 10 48 48 H 1.09002 * 109.47167 * 299.99793 * 12 11 10 49 49 H 1.09002 * 109.47398 * 184.99964 * 13 12 11 50 50 H 1.09001 * 109.47194 * 305.00145 * 13 12 11 51 51 H 1.07997 * 124.59612 * 0.03640 * 18 17 15 52 52 H 1.08998 * 109.47292 * 240.01983 * 21 20 19 53 53 H 0.96698 * 113.99637 * 300.00056 * 22 21 20 54 54 H 1.08001 * 123.45265 * 180.25129 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0422 7 6 4.0141 -0.8776 1.5215 8 8 1.6074 -2.4159 1.5210 9 6 2.0295 -3.1817 2.6513 10 6 1.4636 -4.5994 2.5470 11 8 2.0313 -5.2564 1.4120 12 6 1.5663 -6.5942 1.2221 13 6 2.2359 -7.1963 -0.0148 14 8 3.6642 -7.3154 0.2178 15 6 4.4061 -7.8325 -0.7818 16 8 3.8736 -8.1742 -1.8198 17 6 5.8593 -7.9834 -0.6167 18 6 6.5276 -7.6252 0.5136 19 16 8.1954 -7.9398 0.3562 20 6 8.0000 -8.5695 -1.2702 21 6 9.1238 -9.0866 -2.1308 22 8 8.8792 -10.4550 -2.4622 23 14 10.7317 -8.9512 -1.1997 24 1 10.6517 -9.7556 0.0460 25 1 11.8393 -9.4602 -2.0479 26 1 10.9860 -7.5293 -0.8552 27 6 6.7242 -8.5324 -1.6352 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1393 36 1 3.1301 -0.7207 -1.2495 37 1 1.8930 -0.5142 3.9322 38 1 1.8933 1.0276 3.0423 39 1 0.4400 -0.0001 3.0422 40 1 4.3777 -1.3911 0.6315 41 1 4.3770 0.1502 1.5217 42 1 4.3774 -1.3918 2.4112 43 1 1.6653 -2.7119 3.5649 44 1 3.1184 -3.2255 2.6744 45 1 0.3806 -4.5509 2.4347 46 1 1.7108 -5.1566 3.4505 47 1 0.4853 -6.5868 1.0822 48 1 1.8151 -7.1931 2.0982 49 1 1.8163 -8.1829 -0.2113 50 1 2.0606 -6.5491 -0.8742 51 1 6.0639 -7.2003 1.3916 52 1 9.1825 -8.4963 -3.0451 53 1 8.8148 -11.0400 -1.6950 54 1 6.3698 -8.8742 -2.5965 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_1458_6894092_16896872.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 08:59:44 Heat of formation + Delta-G solvation = -228.963630 kcal Electronic energy + Delta-G solvation = -31968.933968 eV Core-core repulsion = 27542.288691 eV Total energy + Delta-G solvation = -4426.645277 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 390.158 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.56679 -39.38861 -39.00406 -37.82744 -37.25885 -37.07638 -36.83118 -32.42250 -31.60453 -29.79372 -29.21361 -29.06378 -27.84482 -27.38951 -27.03401 -26.37188 -23.69844 -23.43956 -22.36649 -20.78064 -20.42139 -18.92265 -18.81296 -18.19190 -17.96518 -17.70240 -17.42811 -17.13592 -16.36156 -16.28454 -16.16899 -15.77181 -15.66007 -15.58779 -15.03015 -14.86567 -14.75098 -14.49186 -14.45480 -14.31953 -14.05094 -13.94846 -13.73946 -13.59798 -13.51819 -13.36287 -13.17581 -12.97030 -12.95660 -12.92670 -12.77040 -12.61242 -12.45233 -12.38171 -12.35143 -12.21156 -11.95511 -11.81218 -11.78024 -11.68179 -11.49931 -11.45377 -11.17774 -10.60639 -10.56254 -10.28677 -10.05272 -10.05123 -9.63003 -0.50106 0.24627 0.57617 0.59931 1.08734 1.42845 1.49832 1.56350 1.57559 1.80000 1.90704 1.92862 2.14960 2.49945 2.66039 3.38469 3.65567 3.70931 3.86136 3.97756 4.04773 4.10983 4.11540 4.15240 4.20057 4.24296 4.32760 4.44011 4.48462 4.49777 4.55387 4.59260 4.64477 4.67604 4.73021 4.75240 4.79133 4.79769 4.80814 4.82370 4.85331 4.91934 4.98429 5.07659 5.07751 5.08033 5.19539 5.25601 5.32961 5.39305 5.43683 5.54165 5.59963 5.64597 6.26260 6.59921 6.64157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.384 4.384 3 C -0.140 4.140 4 C -0.135 4.135 5 Si 1.312 2.688 6 C -0.513 4.513 7 C -0.518 4.518 8 O -0.638 6.638 9 C 0.074 3.926 10 C 0.053 3.947 11 O -0.400 6.400 12 C 0.064 3.936 13 C 0.065 3.935 14 O -0.346 6.346 15 C 0.528 3.472 16 O -0.540 6.540 17 C -0.179 4.179 18 C -0.160 4.160 19 S 0.233 5.767 20 C -0.245 4.245 21 C -0.041 4.041 22 O -0.548 6.548 23 Si 0.919 3.081 24 H -0.227 1.227 25 H -0.241 1.241 26 H -0.233 1.233 27 C -0.065 4.065 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.098 0.902 50 H 0.067 0.933 51 H 0.199 0.801 52 H 0.132 0.868 53 H 0.391 0.609 54 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 0.525 7.541 7.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.427 4.427 3 C -0.197 4.197 4 C -0.193 4.193 5 Si 1.442 2.558 6 C -0.615 4.615 7 C -0.619 4.619 8 O -0.597 6.597 9 C -0.001 4.001 10 C -0.023 4.023 11 O -0.320 6.320 12 C -0.012 4.012 13 C -0.009 4.009 14 O -0.262 6.262 15 C 0.373 3.627 16 O -0.432 6.432 17 C -0.195 4.195 18 C -0.298 4.298 19 S 0.499 5.501 20 C -0.362 4.362 21 C -0.154 4.154 22 O -0.355 6.355 23 Si 0.738 3.262 24 H -0.149 1.149 25 H -0.164 1.164 26 H -0.156 1.156 27 C -0.093 4.093 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.112 0.888 48 H 0.095 0.905 49 H 0.116 0.884 50 H 0.086 0.914 51 H 0.216 0.784 52 H 0.150 0.850 53 H 0.241 0.759 54 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.580 0.836 7.787 8.612 hybrid contribution -2.153 -0.031 -0.959 2.357 sum 1.428 0.805 6.828 7.022 Atomic orbital electron populations 1.21523 0.94137 1.01654 1.01902 1.25950 1.00516 1.03064 1.13127 1.21597 1.01174 0.94623 1.02291 1.21517 1.00777 0.99825 0.97139 0.76262 0.62294 0.52976 0.64270 1.27026 1.06956 1.09761 1.17761 1.27119 1.25801 1.04741 1.04237 1.85396 1.79274 1.46546 1.48502 1.22337 0.99479 0.90652 0.87664 1.22860 0.98403 0.92153 0.88887 1.87985 1.68440 1.26642 1.48935 1.22657 0.98287 0.83604 0.96690 1.23338 0.76052 1.02054 0.99443 1.86572 1.22582 1.74672 1.42413 1.20717 0.87836 0.73237 0.80908 1.90854 1.74211 1.48549 1.29618 1.19422 0.90310 1.12503 0.97225 1.26224 1.00295 1.01070 1.02186 1.83139 1.01980 1.56111 1.08867 1.24935 0.99343 1.11365 1.00513 1.24555 1.01908 0.85212 1.03697 1.86525 1.94997 1.16501 1.37518 0.85930 0.76650 0.83298 0.80325 1.14934 1.16381 1.15585 1.20934 0.91161 0.97791 0.99384 0.91746 0.93472 0.92737 0.91997 0.93216 0.91506 0.93052 0.93378 0.92494 0.90638 0.90368 0.90932 0.91946 0.90425 0.90975 0.88777 0.91614 0.91755 0.89786 0.88841 0.90493 0.88382 0.91419 0.78403 0.85014 0.75923 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.22 7.85 71.98 0.56 0.35 16 2 C -0.38 -0.45 0.53 -10.79 -0.01 -0.45 16 3 C -0.14 0.02 7.85 71.98 0.56 0.59 16 4 C -0.14 -0.48 7.85 71.98 0.56 0.08 16 5 Si 1.31 -1.73 8.45 68.60 0.58 -1.15 16 6 C -0.51 1.41 8.50 113.37 0.96 2.37 16 7 C -0.52 0.08 8.50 113.37 0.96 1.05 16 8 O -0.64 -1.26 8.52 -144.35 -1.23 -2.49 16 9 C 0.07 -0.16 5.50 71.98 0.40 0.24 16 10 C 0.05 -0.11 6.32 71.98 0.45 0.34 16 11 O -0.40 -1.41 10.28 -136.02 -1.40 -2.81 16 12 C 0.06 -0.07 6.33 71.98 0.46 0.38 16 13 C 0.06 0.21 5.86 71.98 0.42 0.63 16 14 O -0.35 -2.31 9.84 -54.43 -0.54 -2.85 16 15 C 0.53 5.20 7.92 70.13 0.56 5.75 16 16 O -0.54 -8.50 16.59 19.63 0.33 -8.17 16 17 C -0.18 -1.00 5.98 -19.88 -0.12 -1.11 16 18 C -0.16 0.01 10.56 67.32 0.71 0.72 16 19 S 0.23 -0.59 20.18 -56.49 -1.14 -1.73 16 20 C -0.24 -0.08 5.68 24.51 0.14 0.06 16 21 C -0.04 0.08 2.95 71.24 0.21 0.29 16 22 O -0.55 0.03 12.85 -148.98 -1.91 -1.88 16 23 Si 0.92 -3.17 26.19 68.60 1.80 -1.37 16 24 H -0.23 1.00 7.11 99.48 0.71 1.71 16 25 H -0.24 0.16 7.11 99.48 0.71 0.87 16 26 H -0.23 0.74 7.11 99.48 0.71 1.44 16 27 C -0.06 -0.31 9.90 22.68 0.22 -0.08 16 28 H 0.06 -0.04 7.79 -2.39 -0.02 -0.06 16 29 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.05 0.14 7.97 -2.39 -0.02 0.12 16 31 H 0.06 -0.09 7.79 -2.39 -0.02 -0.11 16 32 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.07 -0.16 7.79 -2.38 -0.02 -0.18 16 34 H 0.05 0.27 7.96 -2.39 -0.02 0.25 16 35 H 0.05 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.06 0.15 7.79 -2.38 -0.02 0.13 16 37 H 0.07 -0.33 7.48 -2.39 -0.02 -0.35 16 38 H 0.08 -0.25 7.79 -2.39 -0.02 -0.27 16 39 H 0.07 -0.17 7.79 -2.39 -0.02 -0.19 16 40 H 0.06 0.13 7.79 -2.39 -0.02 0.12 16 41 H 0.08 -0.10 7.79 -2.39 -0.02 -0.12 16 42 H 0.07 -0.11 7.48 -2.39 -0.02 -0.12 16 43 H 0.09 -0.71 7.21 -2.38 -0.02 -0.73 16 44 H 0.07 -0.19 7.21 -2.39 -0.02 -0.21 16 45 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 47 H 0.09 -0.47 8.14 -2.39 -0.02 -0.48 16 48 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 49 H 0.10 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.07 0.41 8.14 -2.39 -0.02 0.40 16 51 H 0.20 -0.77 8.02 -2.91 -0.02 -0.80 16 52 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 53 H 0.39 -2.69 8.70 -74.06 -0.64 -3.34 16 54 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 Total: 0.00 -17.98 455.94 4.53 -13.45 By element: Atomic # 1 Polarization: -3.17 SS G_CDS: 0.98 Total: -2.19 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 7.07 Total: 11.20 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -4.75 Total: -18.20 kcal Atomic # 14 Polarization: -4.90 SS G_CDS: 2.38 Total: -2.53 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.14 Total: -1.73 kcal Total: -17.98 4.53 -13.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_16896872.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.510 kcal (2) G-P(sol) polarization free energy of solvation -17.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds