Wall clock time and date at job start Sat Mar 6 2021 09:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99914 * 2 1 4 4 C 1.52995 * 112.85268 * 66.01982 * 3 2 1 5 5 F 1.39903 * 109.46853 * 283.56368 * 4 3 2 6 6 F 1.39903 * 109.47171 * 43.56198 * 4 3 2 7 7 F 1.39902 * 109.47330 * 163.56564 * 4 3 2 8 8 C 1.53782 * 113.61199 * 294.81793 * 3 2 1 9 9 C 1.53781 * 87.08217 * 270.80248 * 8 3 2 10 10 H 1.08997 * 113.61330 * 219.93881 * 9 8 3 11 11 C 1.53001 * 113.61397 * 89.11545 * 9 8 3 12 12 O 1.45200 * 109.47173 * 174.99619 * 11 9 8 13 13 C 1.34795 * 117.00157 * 179.97438 * 12 11 9 14 14 O 1.21566 * 119.99809 * 0.02562 * 13 12 11 15 15 C 1.47027 * 120.00289 * 180.02562 * 13 12 11 16 16 C 1.36102 * 123.47415 * 359.70780 * 15 13 12 17 17 S 1.70444 * 110.80820 * 179.85529 * 16 15 13 18 18 C 1.75508 * 92.45627 * 0.34849 * 17 16 15 19 19 C 1.50699 * 124.70221 * 179.79991 * 18 17 16 20 20 O 1.42899 * 109.46911 * 120.00196 * 19 18 17 21 21 Si 1.86295 * 109.47039 * 0.02562 * 19 18 17 22 22 C 1.32746 * 110.59626 * 359.79945 * 18 17 16 23 23 C 1.53778 * 87.08353 * 334.56934 * 9 8 3 24 24 H 1.09010 * 109.47112 * 302.48518 * 1 2 3 25 25 H 1.08997 * 109.47453 * 62.48194 * 1 2 3 26 26 H 1.09001 * 109.47184 * 182.49082 * 1 2 3 27 27 H 1.08997 * 113.61287 * 156.25411 * 8 3 2 28 28 H 1.08998 * 113.68775 * 25.36593 * 8 3 2 29 29 H 1.08997 * 109.46905 * 55.00309 * 11 9 8 30 30 H 1.08996 * 109.47248 * 295.00131 * 11 9 8 31 31 H 1.08004 * 124.59811 * 359.97438 * 16 15 13 32 32 H 1.08996 * 109.46991 * 239.99689 * 19 18 17 33 33 H 0.96696 * 114.00366 * 180.02562 * 20 19 18 34 34 H 1.48499 * 110.00202 * 60.00101 * 21 19 18 35 35 H 1.48499 * 109.99933 * 181.31669 * 21 19 18 36 36 H 1.07995 * 123.45586 * 179.97438 * 22 18 17 37 37 H 1.09006 * 113.61678 * 139.97897 * 23 9 8 38 38 H 1.08999 * 113.61541 * 270.88384 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.7284 2.0814 1.2882 5 9 0.4117 2.5538 1.2694 6 9 1.9052 1.2368 2.3894 7 9 2.6106 3.1630 1.3836 8 6 1.7204 2.1087 -1.2789 9 6 2.9972 1.4844 -1.8662 10 1 3.5924 2.1813 -2.4562 11 6 2.7553 0.1546 -2.5832 12 8 3.9903 -0.2936 -3.2014 13 6 3.9484 -1.4589 -3.8776 14 8 2.9077 -2.0832 -3.9489 15 6 5.1613 -1.9750 -4.5290 16 6 6.3607 -1.3324 -4.4991 17 16 7.5426 -2.2163 -5.3517 18 6 6.4012 -3.4813 -5.7728 19 6 6.7366 -4.7024 -6.5898 20 8 6.4846 -5.8771 -5.8162 21 14 8.5352 -4.6515 -7.0727 22 6 5.2015 -3.2134 -5.2718 23 6 3.4899 1.3230 -0.4185 24 1 -0.3634 0.5520 0.8669 25 1 -0.3634 0.4748 -0.9114 26 1 -0.3633 -1.0267 0.0447 27 1 1.7858 3.1880 -1.1409 28 1 0.8087 1.8020 -1.7915 29 1 1.9929 0.2889 -3.3504 30 1 2.4184 -0.5906 -1.8626 31 1 6.5399 -0.3910 -4.0009 32 1 6.1192 -4.7194 -7.4879 33 1 6.6792 -6.7029 -6.2801 34 1 9.3872 -4.6283 -5.8566 35 1 8.8711 -5.8342 -7.9055 36 1 4.3433 -3.8552 -5.4062 37 1 4.0066 0.3807 -0.2356 38 1 4.0390 2.1874 -0.0452 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_1458_6894092_17321610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 09:14:19 Heat of formation + Delta-G solvation = -238.251611 kcal Electronic energy + Delta-G solvation = -29290.891072 eV Core-core repulsion = 24392.756741 eV Total energy + Delta-G solvation = -4898.134330 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.067 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.17162 -48.72003 -48.59901 -41.80410 -40.99913 -39.00270 -37.78160 -37.25568 -36.79539 -32.22867 -30.69364 -28.35286 -27.62181 -27.01322 -26.91485 -25.69301 -23.37344 -22.17862 -20.80203 -20.49250 -19.75679 -19.46014 -19.24383 -18.76642 -18.52586 -18.33681 -17.48204 -17.24880 -17.15391 -16.55008 -16.26255 -15.87729 -15.68496 -15.59392 -15.51482 -15.26067 -15.06658 -14.86775 -14.76826 -14.70739 -14.30144 -14.22835 -14.08899 -13.95235 -13.71679 -13.58106 -13.39761 -13.21000 -12.83838 -12.75485 -12.44807 -12.39751 -12.15210 -12.06557 -11.76744 -11.61092 -11.32412 -10.85004 -10.70675 -9.99038 -9.58685 -5.17760 -0.42088 0.26538 0.63940 0.73460 1.11729 1.47576 1.54821 1.59013 1.81426 2.00106 2.11030 2.53449 2.61822 2.82441 3.14163 3.20429 3.31507 3.42520 3.58499 3.62105 3.91369 4.01186 4.10819 4.14052 4.19605 4.23954 4.25225 4.30522 4.35944 4.41554 4.50050 4.56898 4.66475 4.69481 4.72676 4.87632 4.99660 5.17182 5.44274 5.62592 6.29918 6.81648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.332 6.332 3 C 0.038 3.962 4 C 0.437 3.563 5 F -0.181 7.181 6 F -0.174 7.174 7 F -0.175 7.175 8 C -0.143 4.143 9 C -0.099 4.099 10 H 0.108 0.892 11 C 0.079 3.921 12 O -0.352 6.352 13 C 0.531 3.469 14 O -0.501 6.501 15 C -0.152 4.152 16 C -0.175 4.175 17 S 0.217 5.783 18 C -0.201 4.201 19 C -0.034 4.034 20 O -0.531 6.531 21 Si 0.647 3.353 22 C -0.052 4.052 23 C -0.113 4.113 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.183 0.817 32 H 0.088 0.912 33 H 0.384 0.616 34 H -0.234 1.234 35 H -0.237 1.237 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 2.349 -4.850 6.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.250 6.250 3 C -0.005 4.005 4 C 0.383 3.617 5 F -0.163 7.163 6 F -0.155 7.155 7 F -0.156 7.156 8 C -0.180 4.180 9 C -0.118 4.118 10 H 0.126 0.874 11 C 0.006 3.994 12 O -0.269 6.269 13 C 0.373 3.627 14 O -0.390 6.390 15 C -0.168 4.168 16 C -0.313 4.313 17 S 0.483 5.517 18 C -0.317 4.317 19 C -0.146 4.146 20 O -0.339 6.339 21 Si 0.545 3.455 22 C -0.080 4.080 23 C -0.150 4.150 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.201 0.799 32 H 0.106 0.894 33 H 0.232 0.768 34 H -0.157 1.157 35 H -0.160 1.160 36 H 0.175 0.825 37 H 0.117 0.883 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.621 2.286 -4.631 6.930 hybrid contribution -2.598 -0.941 0.960 2.925 sum 2.023 1.345 -3.671 4.402 Atomic orbital electron populations 1.23163 0.79362 1.04552 1.01525 1.88101 1.21266 1.21769 1.93817 1.24047 1.00077 0.86436 0.89928 1.21173 0.74290 0.78691 0.87580 1.93188 1.36923 1.89330 1.96835 1.93224 1.94931 1.70624 1.56720 1.93179 1.68856 1.57001 1.96579 1.23597 0.99632 1.01133 0.93667 1.22107 0.97642 0.96450 0.95585 0.87396 1.22998 0.83859 0.95535 0.97024 1.86476 1.38976 1.38038 1.63400 1.20326 0.87814 0.78630 0.75902 1.90886 1.32068 1.57918 1.58114 1.19343 0.92124 0.98089 1.07236 1.26071 0.97229 1.05184 1.02847 1.83130 1.10900 1.11633 1.46029 1.23503 0.97200 1.01551 1.09485 1.24031 1.11952 0.83591 0.94977 1.86613 1.88420 1.15303 1.43610 0.95370 0.74791 0.91430 0.83871 1.20948 0.98097 0.94074 0.94874 1.23284 0.90963 1.05795 0.94933 0.92685 0.92625 0.87899 0.86811 0.88608 0.90549 0.88914 0.79928 0.89414 0.76759 1.15733 1.16047 0.82525 0.88268 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.01 10.43 101.05 1.05 1.05 16 2 O -0.33 -0.34 8.36 -35.23 -0.29 -0.64 16 3 C 0.04 -0.01 0.85 -89.81 -0.08 -0.08 16 4 C 0.44 0.53 2.51 37.16 0.09 0.63 16 5 F -0.18 -0.27 15.24 2.25 0.03 -0.24 16 6 F -0.17 -0.53 17.09 2.25 0.04 -0.50 16 7 F -0.17 -0.19 15.82 2.25 0.04 -0.15 16 8 C -0.14 0.32 6.52 -25.92 -0.17 0.15 16 9 C -0.10 0.18 4.21 -89.81 -0.38 -0.19 16 10 H 0.11 -0.32 8.14 -51.93 -0.42 -0.75 16 11 C 0.08 0.03 5.06 37.16 0.19 0.22 16 12 O -0.35 -0.59 9.87 -40.75 -0.40 -0.99 16 13 C 0.53 1.87 7.92 34.29 0.27 2.14 16 14 O -0.50 -3.14 16.59 -19.32 -0.32 -3.46 16 15 C -0.15 -0.31 5.98 -104.65 -0.63 -0.94 16 16 C -0.18 0.06 10.55 29.96 0.32 0.38 16 17 S 0.22 -0.24 20.18 -107.50 -2.17 -2.41 16 18 C -0.20 -0.13 5.72 -36.19 -0.21 -0.34 16 19 C -0.03 0.03 2.94 36.00 0.11 0.13 16 20 O -0.53 -0.30 12.82 -35.23 -0.45 -0.75 16 21 Si 0.65 -1.16 30.91 -169.99 -5.25 -6.41 16 22 C -0.05 -0.11 9.91 -39.01 -0.39 -0.50 16 23 C -0.11 0.15 6.89 -25.92 -0.18 -0.03 16 24 H 0.05 -0.02 6.25 -51.92 -0.32 -0.34 16 25 H 0.06 -0.11 6.76 -51.93 -0.35 -0.46 16 26 H 0.10 -0.16 8.14 -51.93 -0.42 -0.59 16 27 H 0.11 -0.38 8.06 -51.93 -0.42 -0.80 16 28 H 0.10 -0.27 6.70 -51.93 -0.35 -0.62 16 29 H 0.08 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.16 6.12 -51.93 -0.32 -0.16 16 31 H 0.18 -0.46 8.02 -52.48 -0.42 -0.88 16 32 H 0.09 -0.23 7.96 -51.93 -0.41 -0.64 16 33 H 0.38 -1.40 8.74 45.56 0.40 -1.00 16 34 H -0.23 -0.23 7.11 56.52 0.40 0.17 16 35 H -0.24 0.05 7.11 56.52 0.40 0.46 16 36 H 0.16 0.40 8.06 -52.49 -0.42 -0.03 16 37 H 0.10 -0.06 8.10 -51.93 -0.42 -0.48 16 38 H 0.12 -0.29 7.01 -51.93 -0.36 -0.66 16 LS Contribution 346.77 15.07 5.23 5.23 Total: 0.00 -7.46 346.77 -7.42 -14.88 By element: Atomic # 1 Polarization: -3.31 SS G_CDS: -3.87 Total: -7.18 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 0.01 Total: 2.62 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -1.47 Total: -5.84 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.11 Total: -0.89 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.25 Total: -6.41 kcal Atomic # 16 Polarization: -0.24 SS G_CDS: -2.17 Total: -2.41 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -7.46 -7.42 -14.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_1458_6894092_17321610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.371 kcal (2) G-P(sol) polarization free energy of solvation -7.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds